##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088471_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1614461 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.39069447945785 31.0 31.0 34.0 30.0 34.0 2 31.589944260034773 31.0 31.0 34.0 30.0 34.0 3 31.70233161408049 31.0 31.0 34.0 30.0 34.0 4 35.40760352836024 37.0 35.0 37.0 33.0 37.0 5 35.275205780752835 37.0 35.0 37.0 33.0 37.0 6 35.328755541323076 37.0 35.0 37.0 33.0 37.0 7 35.17182019262156 37.0 35.0 37.0 32.0 37.0 8 35.20028665913887 37.0 35.0 37.0 32.0 37.0 9 36.757826296206595 39.0 35.0 39.0 32.0 39.0 10 36.591378794532666 39.0 35.0 39.0 32.0 39.0 11 36.631603984239945 39.0 35.0 39.0 32.0 39.0 12 36.47082772516648 38.0 35.0 39.0 32.0 39.0 13 36.492817726783116 38.0 35.0 39.0 32.0 39.0 14 37.476917683363055 39.0 36.0 41.0 32.0 41.0 15 37.49324635280753 39.0 36.0 41.0 32.0 41.0 16 37.358910497063725 39.0 36.0 41.0 32.0 41.0 17 37.40406984126591 39.0 36.0 41.0 32.0 41.0 18 37.270884834009614 39.0 36.0 40.0 32.0 41.0 19 37.33975921375617 39.0 36.0 41.0 31.0 41.0 20 37.235078456525116 39.0 36.0 40.0 31.0 41.0 21 37.0810381916937 39.0 36.0 40.0 31.0 41.0 22 36.97748040987054 39.0 36.0 40.0 31.0 41.0 23 36.78563557744659 39.0 35.0 40.0 30.0 41.0 24 37.007915335210946 39.0 36.0 40.0 31.0 41.0 25 36.96278014767777 39.0 36.0 40.0 31.0 41.0 26 36.800462817002085 39.0 36.0 40.0 30.0 41.0 27 36.73828355098079 39.0 35.0 40.0 30.0 41.0 28 36.56123127161325 39.0 35.0 40.0 30.0 41.0 29 36.40549136832664 39.0 35.0 40.0 30.0 41.0 30 36.25615360172838 38.0 35.0 40.0 30.0 41.0 31 36.000605774930456 38.0 35.0 40.0 29.0 41.0 32 35.862030114075225 38.0 35.0 40.0 28.0 41.0 33 35.67698693248087 38.0 34.0 40.0 27.0 41.0 34 35.568324660676225 38.0 34.0 40.0 27.0 41.0 35 35.34471876372362 38.0 34.0 40.0 26.0 41.0 36 35.2119976883926 38.0 34.0 40.0 25.0 41.0 37 35.06683592852352 38.0 34.0 40.0 25.0 41.0 38 35.011260724167386 38.0 33.0 40.0 25.0 41.0 39 34.93913696273865 38.0 33.0 40.0 24.0 41.0 40 34.828179187976666 38.0 33.0 40.0 24.0 41.0 41 34.64700417043211 38.0 33.0 40.0 23.0 41.0 42 34.45757376610522 38.0 33.0 40.0 23.0 41.0 43 34.13150952547011 38.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 0.0 11 1.0 12 3.0 13 4.0 14 3.0 15 5.0 16 30.0 17 56.0 18 132.0 19 328.0 20 772.0 21 1453.0 22 2734.0 23 4599.0 24 7388.0 25 11040.0 26 16097.0 27 22189.0 28 29891.0 29 38577.0 30 48797.0 31 60409.0 32 73762.0 33 90433.0 34 109500.0 35 133038.0 36 168116.0 37 219497.0 38 291939.0 39 283667.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.99931803865191 21.5466338301142 13.377529714251382 24.07651841698251 2 19.44141109633494 23.34624373087984 34.175616506066106 23.036728666719107 3 19.497528896641043 24.810447573524538 32.105451912433935 23.58657161740048 4 14.104335750445504 16.788203617182454 36.407259140976464 32.70020149139558 5 12.66936767131569 38.638096553586614 35.19007272396174 13.502463051135951 6 32.54479358745736 37.883603258301065 13.893057806908931 15.67854534733264 7 26.625480578347823 32.5718614447794 21.63198739393519 19.17067058293759 8 27.004802221918027 34.64735289362827 19.013961935283664 19.333882949170032 9 25.126652176794607 14.276281681626251 21.00502892296562 39.59203721861352 10 16.439666241550587 27.565608583917484 33.72264799211626 22.27207718241568 11 33.994007907282985 22.60066982107341 23.00959886922013 20.39572340242347 12 20.99598565713263 27.05268197869134 30.639389864481085 21.311942499694943 13 30.78259555356246 21.22640311534314 25.703067463382517 22.28793386771189 14 20.817288246665605 22.689553974979884 27.066122997086957 29.427034781267558 15 23.23797230159168 29.60158219987971 24.693628399818888 22.466817098709726 16 22.62934812299585 28.223846844240896 25.87427011244 23.272534920323253 17 22.26941375480733 27.216885387754797 26.546506852751477 23.967194004686394 18 22.891107310737144 26.266041731574813 28.485915732866886 22.356935224821164 19 23.20966564073087 25.523874531499985 29.28085596369315 21.985603864075998 20 23.70363855181389 25.207236346991348 29.204483725528213 21.884641375666554 21 22.847996947588083 25.97492289996476 29.406408702347097 21.770671450100064 22 22.131968502181223 26.28617228907976 28.947989452826672 22.633869755912343 23 22.719656900971906 26.36539377538386 29.635401536488033 21.279547787156208 24 22.817522380534434 26.5397553734652 27.63089353041046 23.011828715589907 25 22.692589043649864 26.31577969365627 28.836435194160774 22.15519606853309 26 22.431449257677947 27.028463369508458 28.658481065817014 21.881606306996577 27 21.87318244293297 27.0351529086178 28.215422980177284 22.87624166827195 28 21.992603104070028 26.746201983200585 28.6450400474214 22.616154865307987 29 22.58636164020066 26.689836422186726 28.173675300920863 22.55012663669175 30 22.401098570978178 26.79216159448881 29.293367879434683 21.513371955098325 31 22.61677426707737 26.64443427249094 29.268405988128542 21.470385472303143 32 22.173344540376014 26.569238897687836 28.56643796288669 22.690978599049465 33 22.111280483083828 26.537773287803173 29.01438932250454 22.33655690660846 34 21.68476042468663 26.63774473338161 29.490399582275444 22.18709525965632 35 21.41036544084992 28.053015836245038 28.68226609376132 21.85435262914372 36 23.02465033221614 26.441951834079607 28.41375542673375 22.1196424069705 37 21.946457672250986 26.72619530604951 28.671550443150995 22.655796578548507 38 21.94305096251938 25.78910236914983 29.747513256746373 22.520333411584424 39 21.459607881515876 25.832832134068273 30.3105494651156 22.39701051930025 40 20.825712110729217 26.17108744032838 30.13160429394083 22.871596155001576 41 21.52284880216989 25.16338270171903 30.331733005628504 22.982035490482584 42 20.672967634399345 26.616870893753397 29.82140788783377 22.88875358401349 43 21.00824981216641 26.06120556643982 29.49969060881619 23.430854012577573 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 115.0 1 191.0 2 267.0 3 572.0 4 877.0 5 877.0 6 1392.5 7 1908.0 8 2213.5 9 2519.0 10 3840.5 11 5162.0 12 5162.0 13 9691.5 14 14221.0 15 22037.5 16 29854.0 17 27505.0 18 25156.0 19 25156.0 20 27452.0 21 29748.0 22 24788.0 23 19828.0 24 22686.0 25 25544.0 26 25544.0 27 28739.5 28 31935.0 29 35658.5 30 39382.0 31 45046.5 32 50711.0 33 50711.0 34 57722.5 35 64734.0 36 71304.0 37 77874.0 38 83762.0 39 89650.0 40 89650.0 41 92711.5 42 95773.0 43 101666.5 44 107560.0 45 109535.0 46 111510.0 47 111510.0 48 131480.5 49 151451.0 50 144506.5 51 137562.0 52 128225.0 53 118888.0 54 118888.0 55 107976.5 56 97065.0 57 85418.0 58 73771.0 59 66570.5 60 59370.0 61 59370.0 62 52754.0 63 46138.0 64 40078.5 65 34019.0 66 29246.0 67 24473.0 68 24473.0 69 20864.5 70 17256.0 71 14582.5 72 11909.0 73 9734.0 74 7559.0 75 7559.0 76 6190.5 77 4822.0 78 3765.5 79 2709.0 80 2108.0 81 1507.0 82 1507.0 83 1161.5 84 816.0 85 611.5 86 407.0 87 308.5 88 210.0 89 210.0 90 166.0 91 122.0 92 84.0 93 46.0 94 33.0 95 20.0 96 20.0 97 13.5 98 7.0 99 6.5 100 6.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1614461.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 56.566042490932155 #Duplication Level Percentage of deduplicated Percentage of total 1 83.69979636605026 47.34566237724369 2 9.617226248795015 10.88016857268494 3 2.707578092421339 4.594709322702675 4 1.16788264670305 2.642499976713082 5 0.6288156698230056 1.778480694908605 6 0.3987162951637345 1.3532281736435312 7 0.2675082873552235 1.0592319604448441 8 0.1982236574487822 0.8970182263964637 9 0.15182235307109024 0.7729190707403335 >10 0.9908793874947339 10.815505963868143 >50 0.09720365424771553 3.82185606373198 >100 0.06554900547824559 7.14027946518873 >500 0.006488772761483308 2.4063168629196325 >1k 0.00186964638890197 1.9040884235620785 >5k 2.1995839869434945E-4 0.934220794479424 >10k+ 2.1995839869434945E-4 1.6538140507718588 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 14185 0.8786214098699195 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 12399 0.7679962538580988 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 9580 0.5933868950690044 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5437 0.3367687420135884 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 3079 0.19071380479305478 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 2971 0.18402426568371735 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 2658 0.1646369903020265 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 2638 0.1633981867632603 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 2513 0.15565566464597164 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 2314 0.14332956943524805 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 1.2388035387661889E-4 0.0 10 0.0 0.0 0.0 1.8582053081492831E-4 0.0 11 0.0 0.0 0.0 3.7164106162985663E-4 0.0 12 0.0 0.0 0.0 5.574615924447849E-4 0.0 13 0.0 0.0 0.0 6.194017693830945E-4 0.0 14 6.194017693830944E-5 0.0 0.0 6.813419463214039E-4 0.0 15 6.194017693830944E-5 0.0 0.0 7.432821232597133E-4 0.0 16 6.194017693830944E-5 0.0 0.0 0.001238803538766189 0.0 17 1.2388035387661889E-4 0.0 0.0 0.0017962651312109737 0.0 18 1.2388035387661889E-4 0.0 0.0 0.0020440258389642116 0.0 19 1.2388035387661889E-4 0.0 0.0 0.0027253677852856154 0.0 20 1.2388035387661889E-4 0.0 0.0 0.00439775256261997 0.0 21 1.2388035387661889E-4 0.0 0.0 0.0065037185785224915 0.0 22 1.2388035387661889E-4 0.0 0.0 0.011582813087463865 0.0 23 1.2388035387661889E-4 0.0 0.0 0.014184300518872862 0.0 24 1.2388035387661889E-4 0.0 0.0 0.018520112904554523 0.0 25 1.2388035387661889E-4 0.0 0.0 0.022422344051668017 0.0 26 1.2388035387661889E-4 0.0 0.0 0.030288746522833317 0.0 27 1.8582053081492831E-4 0.0 0.0 0.07377075073352654 0.0 28 1.8582053081492831E-4 0.0 0.0 0.16296460552469214 0.0 29 1.8582053081492831E-4 0.0 0.0 0.2771822917989348 0.0 30 1.8582053081492831E-4 0.0 0.0 0.4317230332600168 0.0 31 1.8582053081492831E-4 0.0 0.0 0.6218174362836885 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACCGTT 45 1.3235361E-4 24.666668 7 GGTATCA 4115 0.0 23.737545 1 TTATGCG 200 0.0 20.35 4 TATGCGG 205 0.0 19.853657 5 TCGGGTA 145 7.2759576E-12 19.13793 25 TAATACT 595 0.0 18.033615 4 GTATTAG 365 0.0 17.739725 1 ATACTGG 515 0.0 17.60194 6 CTCTAAT 490 0.0 17.367346 1 CGGGTAA 150 2.5102054E-10 17.266666 26 CTAATAC 580 0.0 16.905172 3 ACCGTTA 320 0.0 16.765625 8 GTCGGGT 190 1.8189894E-12 16.55263 24 TCTAATA 585 0.0 16.128206 2 AATACTG 635 0.0 15.732284 5 TAGCGAA 285 0.0 15.578948 10 CGAATTA 95 7.062507E-5 15.578946 15 TAGAGGT 515 0.0 15.446601 19 GTATCAA 6325 0.0 15.384981 2 GTATTGG 450 0.0 15.211111 1 >>END_MODULE