##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088469_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1713056 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.39484231688865 31.0 31.0 34.0 30.0 34.0 2 31.5290264883343 31.0 31.0 34.0 30.0 34.0 3 31.678264458371473 31.0 31.0 34.0 30.0 34.0 4 35.38887461939365 37.0 35.0 37.0 33.0 37.0 5 35.25140450750005 37.0 35.0 37.0 33.0 37.0 6 35.322657869912014 37.0 35.0 37.0 33.0 37.0 7 35.16084237759886 37.0 35.0 37.0 32.0 37.0 8 35.19974303233519 37.0 35.0 37.0 32.0 37.0 9 36.75324682905871 39.0 35.0 39.0 32.0 39.0 10 36.586246450787364 39.0 35.0 39.0 32.0 39.0 11 36.62040003362412 39.0 35.0 39.0 32.0 39.0 12 36.469775652401324 38.0 35.0 39.0 32.0 39.0 13 36.48912061251938 38.0 35.0 39.0 32.0 39.0 14 37.44721246707638 39.0 36.0 41.0 32.0 41.0 15 37.46684288196066 39.0 36.0 41.0 32.0 41.0 16 37.330974585769525 39.0 36.0 41.0 32.0 41.0 17 37.38776724170138 39.0 36.0 41.0 32.0 41.0 18 37.252386962247584 39.0 36.0 40.0 31.0 41.0 19 37.33650446920591 39.0 36.0 41.0 31.0 41.0 20 37.227644630414886 39.0 36.0 40.0 31.0 41.0 21 37.064801734444174 39.0 36.0 40.0 31.0 41.0 22 36.96122018194385 39.0 36.0 40.0 31.0 41.0 23 36.76019639754917 39.0 35.0 40.0 30.0 41.0 24 36.97448594791997 39.0 36.0 40.0 31.0 41.0 25 36.93954429977771 39.0 36.0 40.0 30.0 41.0 26 36.74206097173706 39.0 35.0 40.0 30.0 41.0 27 36.687858423775985 39.0 35.0 40.0 30.0 41.0 28 36.49106100442717 39.0 35.0 40.0 30.0 41.0 29 36.317797550109276 38.0 35.0 40.0 30.0 41.0 30 36.13568266303028 38.0 35.0 40.0 29.0 41.0 31 35.88420401901631 38.0 35.0 40.0 28.0 41.0 32 35.748402854314165 38.0 34.0 40.0 27.0 41.0 33 35.55124350867689 38.0 34.0 40.0 27.0 41.0 34 35.435810621485814 38.0 34.0 40.0 27.0 41.0 35 35.185646003399775 38.0 34.0 40.0 26.0 41.0 36 35.030583355126744 38.0 33.0 40.0 25.0 41.0 37 34.873243489996824 38.0 33.0 40.0 25.0 41.0 38 34.786190877589526 38.0 33.0 40.0 24.0 41.0 39 34.69282848896942 38.0 33.0 40.0 24.0 41.0 40 34.574010423477105 38.0 33.0 40.0 23.0 41.0 41 34.368257079745206 38.0 33.0 40.0 23.0 41.0 42 34.15452734761736 38.0 33.0 40.0 22.0 41.0 43 33.81122683671754 37.0 33.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 3.0 14 4.0 15 8.0 16 25.0 17 72.0 18 168.0 19 381.0 20 897.0 21 1697.0 22 3210.0 23 5331.0 24 8497.0 25 12763.0 26 17806.0 27 24567.0 28 32723.0 29 42813.0 30 53074.0 31 65402.0 32 79792.0 33 97401.0 34 117053.0 35 141894.0 36 178361.0 37 234024.0 38 302772.0 39 292316.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.338461789923976 21.30058795509312 13.464825434778549 23.89612482020436 2 19.292539181439487 23.510498197373582 34.439738105467654 22.757224515719276 3 19.571280798759645 24.79171725851344 32.27413464591934 23.362867296807575 4 14.02370967440644 16.597822838249304 36.28217641454803 33.09629107279622 5 12.687734668335418 38.56587291950759 35.01333289746512 13.733059514691872 6 32.41943053817272 37.75696766480488 13.707316048045131 16.116285748977266 7 26.438423495787646 32.6597028935423 21.609392804438386 19.292480806231673 8 27.08755580669867 34.3226958137971 18.998795135710683 19.59095324379355 9 25.001167504156314 14.232634543178973 21.172454373937573 39.59374357872714 10 16.514754917527508 27.451058225767284 33.51268143014589 22.52150542655932 11 33.702809482001754 22.58653540806605 23.061826350101803 20.648828759830383 12 21.2630526964676 27.16846384473129 30.52801542973493 21.040468029066183 13 31.26027403657557 21.003166271271926 25.739789008648874 21.996770683503634 14 20.902118786542882 22.67357284291932 27.229874563353444 29.194433807184357 15 23.254172659854667 29.411706330674537 24.92837362001009 22.405747389460707 16 22.48350316627127 28.204682158668486 25.999675433844544 23.3121392412157 17 22.23949479760148 26.81184970018493 26.674551211402314 24.274104290811273 18 23.09685147479125 25.866930211271555 28.76555115536211 22.270667158575083 19 23.25212952758112 25.038469261950574 29.673869388975028 22.035531821493283 20 23.88929492088992 24.9306502531149 29.375922328283487 21.80413249771169 21 22.871231296583417 25.62858423775989 29.74146787962565 21.758716586031046 22 21.98188500551062 26.04304821325164 29.27685960062018 22.698207180617562 23 22.713676610688736 26.155011861842226 30.0576280051557 21.07368352231334 24 22.766097547307268 26.3028762632395 27.907669101302 23.023357088151233 25 22.704453327853848 26.14870733939813 29.10126697551043 22.045572357237592 26 22.368445631666447 26.88178319914819 29.020709188724712 21.72906198046065 27 21.650372200325034 26.917859077578317 28.603559953673436 22.828208768423217 28 21.946859880821176 26.62376478060262 28.848677451291728 22.58069788728448 29 22.467041357667235 26.563755066968035 28.345191283880972 22.62401229148376 30 22.24235518278445 26.747403470756353 29.64719191900323 21.363049427455962 31 22.653666897054155 26.545075000467 29.51018530625969 21.291072796219154 32 22.14901322548708 26.37426914239815 28.695909532437934 22.780808099676836 33 21.90914949657221 26.371700633254253 29.355666131171425 22.36348373900211 34 21.53846692694226 26.65768077634356 29.755477929501428 22.048374367212748 35 21.2137256458633 28.35925970896456 28.790243868268174 21.636770776903965 36 22.98640558160387 26.50794836829619 28.58347888218482 21.92216716791512 37 21.93325845740011 26.95586133786636 28.676704089066558 22.434176115666972 38 21.834370855360245 25.804585489324346 29.948174490501184 22.41286916481423 39 21.38114574187884 25.826184316216168 30.542434106065418 22.250235835839575 40 20.59821745465414 26.25033857620533 30.29935974072068 22.85208422841985 41 21.55300235368838 25.157496310686867 30.47868837913063 22.810812956494125 42 20.425893841182074 26.845240319055534 29.993181775727123 22.73568406403527 43 20.888108736667103 26.273396783292547 29.50884267647993 23.32965180356042 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 116.0 1 206.0 2 296.0 3 669.5 4 1043.0 5 1043.0 6 1700.0 7 2357.0 8 2602.0 9 2847.0 10 4350.0 11 5853.0 12 5853.0 13 11112.0 14 16371.0 15 26107.5 16 35844.0 17 32911.0 18 29978.0 19 29978.0 20 32275.0 21 34572.0 22 28356.5 23 22141.0 24 24591.5 25 27042.0 26 27042.0 27 30445.0 28 33848.0 29 37258.5 30 40669.0 31 45816.5 32 50964.0 33 50964.0 34 58206.5 35 65449.0 36 71787.5 37 78126.0 38 84094.5 39 90063.0 40 90063.0 41 93306.5 42 96550.0 43 102935.5 44 109321.0 45 112676.5 46 116032.0 47 116032.0 48 141148.5 49 166265.0 50 159036.0 51 151807.0 52 140537.0 53 129267.0 54 129267.0 55 117136.5 56 105006.0 57 91476.5 58 77947.0 59 70004.0 60 62061.0 61 62061.0 62 55086.0 63 48111.0 64 41876.0 65 35641.0 66 30800.5 67 25960.0 68 25960.0 69 22305.5 70 18651.0 71 15702.0 72 12753.0 73 10530.0 74 8307.0 75 8307.0 76 6730.0 77 5153.0 78 4131.0 79 3109.0 80 2391.0 81 1673.0 82 1673.0 83 1303.0 84 933.0 85 691.5 86 450.0 87 339.5 88 229.0 89 229.0 90 193.0 91 157.0 92 108.0 93 59.0 94 42.5 95 26.0 96 26.0 97 16.0 98 6.0 99 4.5 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1713056.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 53.939989932712585 #Duplication Level Percentage of deduplicated Percentage of total 1 82.89315037207194 44.712556965603916 2 9.912890940179723 10.694024750347442 3 2.889726093973779 4.6761538925172745 4 1.1783109804172482 2.5423232968524427 5 0.6778287094489214 1.828103688188919 6 0.4295211245202534 1.3901019079505914 7 0.30205345410984324 1.1404932191678205 8 0.21660960530623594 0.934713594363777 9 0.17250908968565465 0.8374624704851064 >10 1.1429475620495617 11.947963662085108 >50 0.10439777906401826 3.9444926867902232 >100 0.07059159425177212 7.359055859444122 >500 0.006308463280793977 2.2863191439730937 >1k 0.002719165207238783 2.7343133185529895 >5k 1.0876660828955133E-4 0.37143152426209025 >10k+ 3.2629982486865396E-4 2.600490019415124 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 17489 1.0209240094894738 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 14942 0.8722423551827844 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 11894 0.6943147217604094 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6331 0.3695734406814488 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 3826 0.22334354510302057 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 3567 0.20822436627874397 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 3544 0.20688173649898192 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 3190 0.18621691293221004 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3176 0.18539966002278968 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 2910 0.16987185474380287 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 1940 0.11324790316253526 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1915 0.11178852296714176 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 1851 0.10805250966693442 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1732 0.10110585993686137 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 5.8375207815739825E-5 0.0 0.0 3 0.0 0.0 5.8375207815739825E-5 0.0 0.0 4 0.0 0.0 5.8375207815739825E-5 0.0 0.0 5 0.0 0.0 5.8375207815739825E-5 0.0 0.0 6 0.0 0.0 5.8375207815739825E-5 0.0 0.0 7 0.0 0.0 5.8375207815739825E-5 0.0 0.0 8 5.8375207815739825E-5 0.0 5.8375207815739825E-5 0.0 0.0 9 5.8375207815739825E-5 0.0 5.8375207815739825E-5 1.7512562344721948E-4 0.0 10 5.8375207815739825E-5 0.0 5.8375207815739825E-5 1.7512562344721948E-4 0.0 11 5.8375207815739825E-5 0.0 5.8375207815739825E-5 4.086264547101788E-4 0.0 12 5.8375207815739825E-5 0.0 5.8375207815739825E-5 5.253768703416584E-4 0.0 13 5.8375207815739825E-5 0.0 5.8375207815739825E-5 5.253768703416584E-4 0.0 14 1.1675041563147965E-4 0.0 5.8375207815739825E-5 8.172529094203576E-4 0.0 15 1.1675041563147965E-4 0.0 5.8375207815739825E-5 0.0011675041563147964 0.0 16 1.1675041563147965E-4 0.0 5.8375207815739825E-5 0.0015177554032092355 0.0 17 1.1675041563147965E-4 0.0 5.8375207815739825E-5 0.0016928810266564549 0.0 18 1.1675041563147965E-4 0.0 5.8375207815739825E-5 0.0019263818579194141 0.0 19 1.1675041563147965E-4 0.0 5.8375207815739825E-5 0.0025101339360768123 0.0 20 1.1675041563147965E-4 0.0 5.8375207815739825E-5 0.004203014962733267 0.0 21 1.1675041563147965E-4 0.0 5.8375207815739825E-5 0.0077055274316776565 0.0 22 1.1675041563147965E-4 0.0 5.8375207815739825E-5 0.013484673005435899 0.0 23 1.1675041563147965E-4 0.0 5.8375207815739825E-5 0.01722068630564325 0.0 24 1.1675041563147965E-4 0.0 5.8375207815739825E-5 0.021890702930902433 0.0 25 1.1675041563147965E-4 0.0 5.8375207815739825E-5 0.02556834102329404 0.0 26 1.1675041563147965E-4 0.0 5.8375207815739825E-5 0.03233986512991986 0.0 27 1.1675041563147965E-4 0.0 5.8375207815739825E-5 0.07833952888872284 0.0 28 1.1675041563147965E-4 0.0 5.8375207815739825E-5 0.17191498701735378 0.0 29 1.7512562344721948E-4 0.0 5.8375207815739825E-5 0.29602067883361666 0.0 30 1.7512562344721948E-4 0.0 5.8375207815739825E-5 0.46805241626660193 0.0 31 2.335008312629593E-4 0.0 5.8375207815739825E-5 0.66950525843872 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 4910 0.0 23.624237 1 GTATTGG 645 0.0 21.51163 1 GTATTAG 400 0.0 19.425 1 ATTGGAC 685 0.0 19.175182 3 GTACTAT 185 0.0 19.0 1 TATACCG 130 6.9667294E-10 18.5 5 TTACCGG 50 0.0070362585 18.499998 31 TTGGACC 890 0.0 18.084269 4 CCGTATA 85 2.7243781E-5 17.411764 2 CGTATAC 75 2.0680117E-4 17.266666 3 TATTAGA 450 0.0 17.266666 2 CTCGCGG 65 0.001580362 17.076923 10 TAACGGC 325 0.0 16.507692 36 TTAACGG 325 0.0 16.507692 35 CGCCTAT 90 4.448004E-5 16.444445 36 GGACCCT 900 0.0 16.444445 6 TGGACCC 905 0.0 16.35359 5 TCTAATA 460 0.0 16.086956 2 ATACTGG 430 0.0 15.918604 6 CTCTAAT 430 0.0 15.918604 1 >>END_MODULE