##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088463_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1137060 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.16692171037588 31.0 31.0 33.0 30.0 34.0 2 31.30550454681371 31.0 31.0 34.0 30.0 34.0 3 31.41991451638436 31.0 31.0 34.0 28.0 34.0 4 35.15368142402336 35.0 35.0 37.0 33.0 37.0 5 35.01926459465639 35.0 35.0 37.0 32.0 37.0 6 35.12386593495506 36.0 35.0 37.0 32.0 37.0 7 34.934510052239986 36.0 35.0 37.0 32.0 37.0 8 35.01201431762616 36.0 35.0 37.0 32.0 37.0 9 36.48489877403127 38.0 35.0 39.0 32.0 39.0 10 36.31987318171424 38.0 35.0 39.0 32.0 39.0 11 36.36335197790794 38.0 35.0 39.0 32.0 39.0 12 36.19735546057376 38.0 35.0 39.0 32.0 39.0 13 36.23978242133221 38.0 35.0 39.0 32.0 39.0 14 37.05815260408422 39.0 36.0 40.0 31.0 41.0 15 37.11223682127592 39.0 36.0 40.0 31.0 41.0 16 36.94727279123353 38.0 36.0 40.0 31.0 41.0 17 37.072223101683285 39.0 36.0 40.0 31.0 41.0 18 36.953401755404286 39.0 36.0 40.0 31.0 41.0 19 37.04736601410656 39.0 36.0 40.0 31.0 41.0 20 36.97039206374334 39.0 36.0 40.0 31.0 41.0 21 36.80565757303924 39.0 36.0 40.0 30.0 41.0 22 36.70531546268447 39.0 35.0 40.0 30.0 41.0 23 36.48043287073681 38.0 35.0 40.0 30.0 41.0 24 36.67807151777391 39.0 35.0 40.0 30.0 41.0 25 36.628412748667614 39.0 35.0 40.0 30.0 41.0 26 36.39902467767752 38.0 35.0 40.0 30.0 41.0 27 36.323865055494 38.0 35.0 40.0 30.0 41.0 28 36.10163755650537 38.0 35.0 40.0 29.0 41.0 29 35.90324609079556 38.0 34.0 40.0 29.0 41.0 30 35.68587057850949 38.0 34.0 40.0 27.0 41.0 31 35.3419617258544 38.0 34.0 40.0 27.0 41.0 32 35.19408210648515 38.0 34.0 40.0 26.0 41.0 33 34.965705415721246 38.0 33.0 40.0 25.0 41.0 34 34.81385942694317 37.0 33.0 40.0 25.0 41.0 35 34.541158777900904 37.0 33.0 40.0 24.0 41.0 36 34.35857474539602 37.0 33.0 40.0 24.0 41.0 37 34.16909046136527 37.0 33.0 40.0 23.0 41.0 38 34.020064024765624 37.0 33.0 40.0 22.0 41.0 39 33.858762950064204 37.0 33.0 40.0 21.0 41.0 40 33.679118076442755 37.0 32.0 40.0 21.0 41.0 41 33.40467785341143 37.0 32.0 40.0 18.0 41.0 42 33.098047596432906 37.0 31.0 40.0 16.0 41.0 43 32.74091252880235 36.0 31.0 40.0 15.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 1.0 14 1.0 15 3.0 16 31.0 17 63.0 18 144.0 19 330.0 20 741.0 21 1505.0 22 2680.0 23 4573.0 24 7105.0 25 10454.0 26 14651.0 27 19917.0 28 26120.0 29 33226.0 30 40491.0 31 48823.0 32 58653.0 33 70687.0 34 83426.0 35 99198.0 36 124258.0 37 159848.0 38 188462.0 39 141667.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.59539514185707 22.328549065132886 14.932369444004715 22.14368634900533 2 19.71197650080031 24.736689356762177 33.8729706435896 21.678363498847904 3 20.49258614321144 24.70731535714914 33.475454241640726 21.3246442579987 4 14.431076636237314 16.98353648883964 35.27166552336728 33.31372135155576 5 12.094436529294848 39.68462526163967 34.34436177510422 13.876576433961269 6 32.19601428244771 37.34130125059363 12.691942377710937 17.770742089247708 7 25.28468154714791 33.86927690711132 20.746486553040295 20.099554992700472 8 27.99368546954426 34.16653474750673 18.18048300001759 19.65929678293142 9 24.253425500853076 14.330202451937451 21.99611278208714 39.42025926512233 10 17.03041176367122 28.1046734561061 32.37683147767048 22.488083302552194 11 33.00080910418096 22.497581482067787 23.299210243962502 21.202399169788755 12 21.22245088209945 28.017430918333247 30.473589784180255 20.28652841538705 13 32.84408914217368 20.71711255342726 26.150598912986123 20.28819939141294 14 20.25442808646861 23.73551087893339 27.895537614549802 28.114523420048194 15 22.470669973440277 30.174748913865585 25.71157194870983 21.64300916398431 16 21.289026084815223 28.44115526005664 26.988549416917312 23.281269238210825 17 21.72180887552108 26.827695987898615 27.04888044606265 24.40161469051765 18 23.222433292878126 25.0051008741843 29.926389108754154 21.84607672418342 19 22.685962042460382 24.49659648567358 31.51232124953828 21.30512022232776 20 23.78053928552583 24.014036198617486 31.22526515751148 20.980159358345208 21 22.55958348723902 24.895168240901974 32.10393470881044 20.441313563048563 22 20.863103090426186 25.43858723374316 31.470634794997626 22.227674880833025 23 22.134627900022867 25.75959052292755 32.5068158232635 19.59896575378608 24 21.896997519919793 25.73179955323378 29.727015285033332 22.644187641813097 25 21.699206726118234 26.07056795595659 30.936538089458782 21.293687228466396 26 21.59481469755334 26.905000615622747 30.874008407647796 20.62617627917612 27 20.29224491231773 26.949853130001934 30.569890770935572 22.188011186744763 28 21.003816861027563 26.60651152973458 30.496543718009605 21.893127891228257 29 21.23836912739873 26.41259036462456 29.662550788876572 22.686489719100138 30 21.176103283907622 26.65321091235291 31.939651381633333 20.231034422106134 31 21.988285578597434 26.41320598737094 31.600091463950893 19.998416970080733 32 21.581183051026333 26.27064534853042 30.271841415580532 21.876330184862717 33 21.039874764744166 26.409688143105903 30.88236328777725 21.668073804372682 34 20.095245633475805 27.22697131198002 31.513816333350924 21.163966721193255 35 19.622535310361812 29.584454646192814 30.33753715723005 20.45547288621533 36 22.38800063321197 26.671327810317834 30.197439009375053 20.74323254709514 37 21.189822876541257 27.809438376163087 29.86579424128894 21.13494450600672 38 21.095104919705204 25.981214711624716 31.582941973158846 21.34073839551123 39 20.50560216699207 25.70717464337854 32.36363956167661 21.42358362795279 40 19.137072801787063 26.610820888959246 31.79366084463441 22.45844546461928 41 20.910330149684274 25.480537526603698 31.759801593583454 21.849330730128578 42 19.542240515012402 27.613494450600673 31.181116211985294 21.66314882240163 43 19.777056619703444 27.539443828821696 30.22373489525619 22.45976465621867 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 63.0 1 123.0 2 183.0 3 432.0 4 681.0 5 681.0 6 1219.0 7 1757.0 8 2066.5 9 2376.0 10 3892.0 11 5408.0 12 5408.0 13 10907.5 14 16407.0 15 27061.0 16 37715.0 17 33183.0 18 28651.0 19 28651.0 20 30628.0 21 32605.0 22 24916.5 23 17228.0 24 18553.0 25 19878.0 26 19878.0 27 21270.0 28 22662.0 29 24154.5 30 25647.0 31 28162.5 32 30678.0 33 30678.0 34 33644.0 35 36610.0 36 40919.5 37 45229.0 38 47939.0 39 50649.0 40 50649.0 41 52889.5 42 55130.0 43 59055.0 44 62980.0 45 68653.5 46 74327.0 47 74327.0 48 102135.0 49 129943.0 50 121067.5 51 112192.0 52 102037.0 53 91882.0 54 91882.0 55 79576.5 56 67271.0 57 56918.5 58 46566.0 59 40957.5 60 35349.0 61 35349.0 62 31071.5 63 26794.0 64 23299.5 65 19805.0 66 16905.5 67 14006.0 68 14006.0 69 12081.5 70 10157.0 71 8384.5 72 6612.0 73 5370.5 74 4129.0 75 4129.0 76 3311.5 77 2494.0 78 1982.5 79 1471.0 80 1100.5 81 730.0 82 730.0 83 566.5 84 403.0 85 297.5 86 192.0 87 143.0 88 94.0 89 94.0 90 81.5 91 69.0 92 45.5 93 22.0 94 16.0 95 10.0 96 10.0 97 6.5 98 3.0 99 2.5 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1137060.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 53.406684948408966 #Duplication Level Percentage of deduplicated Percentage of total 1 84.64511965204049 45.20615237676907 2 8.91047212249433 9.517575547752713 3 2.464522634098916 3.9486595160263143 4 1.0405039877642168 2.2227947464834683 5 0.5958129906982302 1.5910198341194848 6 0.40529812611656246 1.2987377599012662 7 0.26908654875173404 1.0059714373126984 8 0.2020766589942653 0.863379556986704 9 0.17375563270821587 0.8351741100653235 >10 1.1033918012741437 11.411268774539337 >50 0.1133250285445139 4.213769384697059 >100 0.0652386917076084 6.287493303715336 >500 0.006771610392471306 2.5871153362513346 >1k 0.003963869498031984 4.285367350190883 >5k 1.65161229084666E-4 0.5968976979342919 >10k+ 4.95483687253998E-4 4.128623267254687 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 19106 1.680298313193675 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 15836 1.3927145445271139 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 11864 1.0433926090091992 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6767 0.5951313035371923 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 4082 0.3589960072467592 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 4013 0.35292772588957483 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 3805 0.3346349357113961 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 3577 0.31458322340070005 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3440 0.3025346067929573 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 2975 0.26163966721193255 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2074 0.18240022514203297 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 1959 0.1722864228800591 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 1925 0.16929625525477987 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 1891 0.16630608762950064 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 1747 0.15364184827537686 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1746 0.15355390216875098 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 1569 0.13798744129597385 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 1428 0.12558704026172762 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1403 0.12338838759608112 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 1356 0.11925492058466572 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 1317 0.11582502242625718 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 1275 0.11213128594797109 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 1264 0.11116387877508664 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 1235 0.10861344168293668 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 1221 0.10738219619017467 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 1161 0.10210542979262308 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 8.794610662585967E-5 0.0 4 0.0 0.0 0.0 8.794610662585967E-5 0.0 5 0.0 0.0 0.0 8.794610662585967E-5 0.0 6 0.0 0.0 0.0 8.794610662585967E-5 0.0 7 0.0 0.0 0.0 8.794610662585967E-5 0.0 8 0.0 0.0 0.0 8.794610662585967E-5 0.0 9 8.794610662585967E-5 0.0 0.0 2.6383831987757903E-4 0.0 10 8.794610662585967E-5 0.0 0.0 3.517844265034387E-4 0.0 11 1.7589221325171935E-4 0.0 0.0 5.276766397551581E-4 8.794610662585967E-5 12 1.7589221325171935E-4 0.0 0.0 5.276766397551581E-4 8.794610662585967E-5 13 1.7589221325171935E-4 0.0 0.0 7.035688530068774E-4 8.794610662585967E-5 14 1.7589221325171935E-4 0.0 0.0 9.674071728844564E-4 8.794610662585967E-5 15 1.7589221325171935E-4 8.794610662585967E-5 0.0 0.0012312454927620353 8.794610662585967E-5 16 1.7589221325171935E-4 8.794610662585967E-5 0.0 0.0021986526656464916 1.7589221325171935E-4 17 1.7589221325171935E-4 8.794610662585967E-5 0.0 0.0028142754120275095 1.7589221325171935E-4 18 1.7589221325171935E-4 8.794610662585967E-5 0.0 0.0033419520517826676 1.7589221325171935E-4 19 4.3973053312929835E-4 8.794610662585967E-5 0.0 0.0044852514379188435 1.7589221325171935E-4 20 4.3973053312929835E-4 8.794610662585967E-5 0.0 0.008266934022830809 1.7589221325171935E-4 21 4.3973053312929835E-4 8.794610662585967E-5 0.0 0.012400401034246214 3.517844265034387E-4 22 4.3973053312929835E-4 8.794610662585967E-5 0.0 0.022514203296220076 3.517844265034387E-4 23 4.3973053312929835E-4 8.794610662585967E-5 0.0 0.028230700226900954 3.517844265034387E-4 24 4.3973053312929835E-4 8.794610662585967E-5 0.0 0.03570611929009903 3.517844265034387E-4 25 4.3973053312929835E-4 1.7589221325171935E-4 0.0 0.03913601744850755 3.517844265034387E-4 26 4.3973053312929835E-4 1.7589221325171935E-4 0.0 0.04898598139060384 3.517844265034387E-4 27 4.3973053312929835E-4 1.7589221325171935E-4 0.0 0.10571122016428333 3.517844265034387E-4 28 4.3973053312929835E-4 1.7589221325171935E-4 0.0 0.2163474222996148 3.517844265034387E-4 29 4.3973053312929835E-4 1.7589221325171935E-4 0.0 0.36954954004186236 3.517844265034387E-4 30 4.3973053312929835E-4 1.7589221325171935E-4 0.0 0.583434471355953 3.517844265034387E-4 31 4.3973053312929835E-4 1.7589221325171935E-4 0.0 0.8047948217332419 3.517844265034387E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATACCG 40 5.9400765E-5 27.75 5 GGTATCA 5195 0.0 24.037537 1 ATTTCGG 80 2.7257556E-8 23.125 29 ACGTTTA 55 5.143048E-4 20.181818 26 TGTACTA 60 9.2367333E-4 18.5 5 CGTAAAC 105 4.797148E-7 17.619047 32 GACGAGT 105 4.797148E-7 17.619047 25 GTGTAAA 95 3.6063193E-6 17.526316 1 TATAGCC 85 2.7230748E-5 17.411764 3 GCCGTTT 285 0.0 16.877193 26 GTATTGG 560 0.0 16.848215 1 CGTTTAC 265 0.0 16.754715 28 CCGTTTA 265 0.0 16.754715 27 CGCCGTT 280 0.0 16.517859 25 TGCGACG 90 4.4458902E-5 16.444445 22 AGACCGT 90 4.4458902E-5 16.444445 6 CTCGAGT 90 4.4458902E-5 16.444445 30 GGTCGTA 125 1.6575541E-7 16.279999 29 ACTATTC 80 3.3825263E-4 16.1875 3 TCACGTT 80 3.3825263E-4 16.1875 24 >>END_MODULE