##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088461_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3968784 Sequences flagged as poor quality 0 Sequence length 43 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.4335799075989 31.0 31.0 34.0 30.0 34.0 2 31.564859412857942 31.0 31.0 34.0 30.0 34.0 3 31.718528395599257 31.0 31.0 34.0 30.0 34.0 4 35.42429822333491 37.0 35.0 37.0 33.0 37.0 5 35.28324443960669 37.0 35.0 37.0 33.0 37.0 6 35.35673773125471 37.0 35.0 37.0 33.0 37.0 7 35.20659753718015 37.0 35.0 37.0 32.0 37.0 8 35.23470715463477 37.0 35.0 37.0 32.0 37.0 9 36.802201631532476 39.0 37.0 39.0 32.0 39.0 10 36.63595322899911 39.0 35.0 39.0 32.0 39.0 11 36.67050688573629 39.0 35.0 39.0 32.0 39.0 12 36.52223602997795 38.0 35.0 39.0 32.0 39.0 13 36.545310603953254 38.0 35.0 39.0 32.0 39.0 14 37.53460001854472 39.0 36.0 41.0 32.0 41.0 15 37.554712980096674 39.0 36.0 41.0 32.0 41.0 16 37.42790083814085 39.0 36.0 41.0 32.0 41.0 17 37.467878574394575 39.0 36.0 41.0 32.0 41.0 18 37.33319777543953 39.0 36.0 41.0 32.0 41.0 19 37.40914320356059 39.0 36.0 41.0 32.0 41.0 20 37.30212881325867 39.0 36.0 41.0 31.0 41.0 21 37.144998820797504 39.0 36.0 40.0 31.0 41.0 22 37.03832181343202 39.0 36.0 40.0 31.0 41.0 23 36.85820871077892 39.0 36.0 40.0 30.0 41.0 24 37.077350644429124 39.0 36.0 40.0 31.0 41.0 25 37.03241269870066 39.0 36.0 41.0 31.0 41.0 26 36.85441636531492 39.0 36.0 40.0 30.0 41.0 27 36.794530012215326 39.0 35.0 40.0 30.0 41.0 28 36.61355064926688 39.0 35.0 40.0 30.0 41.0 29 36.4567633310354 39.0 35.0 40.0 30.0 41.0 30 36.287908084692944 38.0 35.0 40.0 30.0 41.0 31 36.06231883619769 38.0 35.0 40.0 29.0 41.0 32 35.929855341081804 38.0 35.0 40.0 29.0 41.0 33 35.75293817955323 38.0 34.0 40.0 27.0 41.0 34 35.65142522243589 38.0 34.0 40.0 27.0 41.0 35 35.41596997972175 38.0 34.0 40.0 26.0 41.0 36 35.273273375421795 38.0 34.0 40.0 26.0 41.0 37 35.1393416724115 38.0 34.0 40.0 25.0 41.0 38 35.068369304048794 38.0 34.0 40.0 25.0 41.0 39 34.99263074029728 38.0 33.0 40.0 25.0 41.0 40 34.887049534567765 38.0 33.0 40.0 24.0 41.0 41 34.704589113441294 38.0 33.0 40.0 24.0 41.0 42 34.50292860483211 38.0 33.0 40.0 23.0 41.0 43 34.17328279896311 38.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 3.0 12 3.0 13 7.0 14 16.0 15 37.0 16 80.0 17 179.0 18 367.0 19 870.0 20 1868.0 21 3620.0 22 6537.0 23 11149.0 24 17573.0 25 26392.0 26 37786.0 27 53421.0 28 71263.0 29 92647.0 30 117310.0 31 145705.0 32 178951.0 33 218823.0 34 267331.0 35 325559.0 36 411280.0 37 540768.0 38 717489.0 39 721748.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.482101318691065 21.04581655237473 13.180435115642474 24.29164701329173 2 19.338341416413694 23.085836870940824 34.459950453337854 23.115871259307635 3 19.517590274502215 24.56175493551677 32.01023285721773 23.910421932763285 4 13.987659696269688 16.463632185576238 36.24813040971743 33.30057770843664 5 12.728961818027889 38.369309088123714 35.19876617120005 13.702962922648348 6 32.83602735749792 37.51463924466537 13.730603630734251 15.91872976710247 7 26.968814629367582 32.26179605642434 21.491066281258945 19.278323032949135 8 27.0924293184008 34.36954492862297 18.854666819862203 19.68335893311402 9 25.084837068482436 14.08889977383501 20.891940705263877 39.93432245241868 10 16.485074521566304 27.35311369930941 33.696467230264986 22.4653445488593 11 34.175253679716505 22.268609226402848 22.912181665719274 20.64395542816137 12 21.34527855383412 26.8890672810614 30.38570504214893 21.379949122955544 13 30.946506537014862 20.892872980741707 25.577733633274068 22.58288684896936 14 21.091296477712067 22.388595600062892 26.916153663187515 29.60395425903753 15 23.3510566460659 29.242609323157925 24.731151909501754 22.675182121274425 16 22.79060790408347 27.987917709807338 25.73082838471431 23.490646001394886 17 22.435864486452274 26.71606718833779 26.443212832948326 24.40485549226161 18 23.031260960536024 25.829019669500784 28.560712802712366 22.579006567250826 19 23.370508447927627 24.98067418131095 29.303333212389486 22.345484158371935 20 23.915108506786968 24.83221561062532 29.242533733254316 22.010142149333397 21 23.032923938415394 25.547623655003648 29.39257969191571 22.026872714665245 22 22.193044519429627 25.986926978137387 28.92991908856718 22.890109413865808 23 22.876679607658165 26.063020814435855 29.778995279158554 21.281304298747425 24 23.037282956190108 26.23357683360949 27.452388439380933 23.276751770819477 25 22.927425629613506 25.961100427738064 28.780956585190832 22.330517357457598 26 22.624587279126303 26.744237025748944 28.656963946639575 21.974211748485178 27 22.013846054610177 26.68129583267822 28.160741426089196 23.1441166866224 28 22.242505513023637 26.318892638148107 28.59646682711883 22.84213502170942 29 22.783779616124235 26.415521731593355 27.99542630689904 22.805272345383372 30 22.505885933827592 26.434419207495292 29.314646501296117 21.745048357381 31 22.848408983708865 26.377248043733292 29.212826901136467 21.561516071421373 32 22.394416022640687 26.08534503263468 28.467132502045967 23.053106442678665 33 22.058116541489785 26.208783345226145 29.087624824127488 22.64547528915658 34 21.813306040338805 26.413405214292336 29.50485589540776 22.268432849961094 35 21.48398602695435 28.06345722014602 28.4307485617761 22.02180819112353 36 23.280884018883366 26.340334974138173 28.197100169724532 22.181680837253932 37 22.213000253982077 26.695783897536373 28.407240101754088 22.683975746727462 38 22.14731262774694 25.691597224741887 29.574171837016074 22.586918310495104 39 21.679713484029364 25.662923454640012 30.088183181548807 22.569179879781817 40 20.87495817358667 26.144758696870372 29.86655358417087 23.113729545372085 41 21.827063402795417 24.94680990449468 30.135426871303654 23.090699821406254 42 20.748445871581826 26.62016879729408 29.628798140689945 23.00258719043415 43 21.209922233107168 25.95374301045358 29.232127523190982 23.60420723324827 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 209.0 1 408.0 2 607.0 3 1377.0 4 2147.0 5 2147.0 6 3379.5 7 4612.0 8 5168.5 9 5725.0 10 8718.5 11 11712.0 12 11712.0 13 23317.5 14 34923.0 15 54493.0 16 74063.0 17 68135.5 18 62208.0 19 62208.0 20 67090.5 21 71973.0 22 59060.0 23 46147.0 24 52651.5 25 59156.0 26 59156.0 27 67053.0 28 74950.0 29 84169.0 30 93388.0 31 106006.0 32 118624.0 33 118624.0 34 135435.0 35 152246.0 36 169006.0 37 185766.0 38 200480.0 39 215194.0 40 215194.0 41 222191.0 42 229188.0 43 244432.0 44 259676.0 45 263590.0 46 267504.0 47 267504.0 48 320181.5 49 372859.0 50 359731.0 51 346603.0 52 321843.0 53 297083.0 54 297083.0 55 271742.5 56 246402.0 57 215995.5 58 185589.0 59 167519.0 60 149449.0 61 149449.0 62 133945.0 63 118441.0 64 103516.5 65 88592.0 66 76369.0 67 64146.0 68 64146.0 69 55598.0 70 47050.0 71 39539.0 72 32028.0 73 26598.0 74 21168.0 75 21168.0 76 17049.0 77 12930.0 78 10195.5 79 7461.0 80 5881.5 81 4302.0 82 4302.0 83 3270.5 84 2239.0 85 1718.0 86 1197.0 87 912.5 88 628.0 89 628.0 90 492.5 91 357.0 92 253.0 93 149.0 94 103.0 95 57.0 96 57.0 97 42.0 98 27.0 99 18.0 100 9.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3968784.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 48.410161787600096 #Duplication Level Percentage of deduplicated Percentage of total 1 78.34150292794384 37.92524831425508 2 12.208054210324498 11.819877588672028 3 4.0179727193013655 5.835321281986278 4 1.7913796531645338 3.4688391533084015 5 0.9286175718626108 2.247726344633868 6 0.5783113479438631 1.67976875505405 7 0.36388532761090064 1.2331023307244295 8 0.25092269158152014 0.9717766476513175 9 0.18558284392815627 0.8085685949608484 >10 1.1152513835488642 10.291615909601148 >50 0.1211503289394398 4.09221540758692 >100 0.08157444170051298 7.826509569438854 >500 0.009466271338322087 3.169691199660581 >1k 0.005805282397287362 4.857215708302958 >5k 3.137990485020196E-4 1.0976049174403808 >10k+ 2.0919936566801304E-4 2.674918276722958 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 36053 0.9084142649234628 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 31004 0.7811964571516111 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 24886 0.6270434470608629 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13708 0.34539546621836814 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 8489 0.21389423057541052 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 7779 0.1960046200549085 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 7629 0.19222512487452076 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 6804 0.17143790138238815 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 6627 0.1669780970695306 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 6024 0.15178452644437188 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 4263 0.10741325302661975 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 2.5196634535918306E-5 0.0 4 0.0 0.0 0.0 5.039326907183661E-5 0.0 5 2.5196634535918306E-5 0.0 0.0 5.039326907183661E-5 0.0 6 2.5196634535918306E-5 0.0 0.0 5.039326907183661E-5 0.0 7 7.558990360775492E-5 0.0 0.0 5.039326907183661E-5 0.0 8 1.0078653814367323E-4 0.0 0.0 5.039326907183661E-5 0.0 9 1.0078653814367323E-4 0.0 0.0 1.2598317267959152E-4 0.0 10 1.2598317267959152E-4 0.0 0.0 1.7637644175142814E-4 0.0 11 1.5117980721550983E-4 0.0 0.0 1.7637644175142814E-4 0.0 12 1.5117980721550983E-4 0.0 0.0 1.7637644175142814E-4 0.0 13 1.5117980721550983E-4 0.0 0.0 2.2676971082326476E-4 0.0 14 1.5117980721550983E-4 0.0 0.0 2.2676971082326476E-4 0.0 15 1.5117980721550983E-4 0.0 0.0 3.0235961443101966E-4 0.0 16 1.5117980721550983E-4 0.0 0.0 5.291293252542845E-4 0.0 17 1.7637644175142814E-4 0.0 0.0 8.062923051493858E-4 0.0 18 1.7637644175142814E-4 0.0 0.0 8.818822087571408E-4 0.0 19 2.5196634535918304E-4 0.0 0.0 0.0014614048030832617 0.0 20 2.5196634535918304E-4 0.0 0.0 0.002948006240702442 0.0 21 2.5196634535918304E-4 0.0 0.0 0.005316489887078763 0.0 22 2.5196634535918304E-4 0.0 0.0 0.008844018722107326 0.0 23 2.5196634535918304E-4 0.0 0.0 0.011086519195804055 0.0 24 2.5196634535918304E-4 0.0 0.0 0.0148660143761918 0.0 25 2.5196634535918304E-4 0.0 0.0 0.018091183596789344 0.0 26 2.771629798951014E-4 0.0 0.0 0.025171437901382387 0.0 27 2.771629798951014E-4 0.0 0.0 0.06868602574491331 0.0 28 2.771629798951014E-4 0.0 0.0 0.15654669037166044 0.0 29 2.771629798951014E-4 0.0 0.0 0.26705912944619814 0.0 30 3.0235961443101966E-4 0.0 0.0 0.4111838789916508 0.0 31 3.0235961443101966E-4 0.0 0.0 0.582621780374039 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9865 0.0 23.704004 1 TATACCG 260 0.0 16.365385 5 GTATTGG 1315 0.0 15.756654 1 GTACGTA 135 3.9789848E-7 15.074075 13 AGTTCCG 505 0.0 15.019801 32 TTAACGG 790 0.0 14.987342 35 TAATACT 1360 0.0 14.827205 4 GTATCAA 15945 0.0 14.630605 2 CTAATAC 1325 0.0 14.520755 3 CTCTAAT 1215 0.0 14.46502 1 ATTGGAC 1630 0.0 14.300613 3 ACCGTTA 680 0.0 14.1470585 8 TAACGGC 830 0.0 14.042169 36 TTGGACC 2085 0.0 13.841727 4 TCTAATA 1340 0.0 13.667911 2 GTATTAG 1310 0.0 13.557251 1 CCGTTTA 725 0.0 13.268966 27 TGGACCC 1925 0.0 13.070129 5 GGACCGT 870 0.0 12.971264 6 GGTAAAC 1160 0.0 12.918103 35 >>END_MODULE