##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088460_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2892648 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.404613350812127 31.0 31.0 34.0 30.0 34.0 2 31.535373470951185 31.0 31.0 34.0 30.0 34.0 3 31.677072011527155 31.0 31.0 34.0 30.0 34.0 4 35.37899668400718 37.0 35.0 37.0 33.0 37.0 5 35.24948904947992 37.0 35.0 37.0 33.0 37.0 6 35.33048196669626 37.0 35.0 37.0 33.0 37.0 7 35.16870390037087 37.0 35.0 37.0 32.0 37.0 8 35.21537290399662 37.0 35.0 37.0 32.0 37.0 9 36.756863261620495 39.0 35.0 39.0 32.0 39.0 10 36.604813306008886 39.0 35.0 39.0 32.0 39.0 11 36.64005955788606 39.0 35.0 39.0 32.0 39.0 12 36.49365322016367 38.0 35.0 39.0 32.0 39.0 13 36.51866455925505 38.0 35.0 39.0 32.0 39.0 14 37.47414825447134 39.0 36.0 41.0 32.0 41.0 15 37.497268938356825 39.0 36.0 41.0 32.0 41.0 16 37.36274825004632 39.0 36.0 41.0 32.0 41.0 17 37.43154438424585 39.0 36.0 41.0 32.0 41.0 18 37.307818994914 39.0 36.0 41.0 32.0 41.0 19 37.393655916654915 39.0 36.0 41.0 32.0 41.0 20 37.301144141976486 39.0 36.0 41.0 31.0 41.0 21 37.141524651461225 39.0 36.0 40.0 31.0 41.0 22 37.04538713317348 39.0 36.0 40.0 31.0 41.0 23 36.857552664548194 39.0 36.0 40.0 30.0 41.0 24 37.06502519490792 39.0 36.0 40.0 31.0 41.0 25 37.01874752821636 39.0 36.0 41.0 31.0 41.0 26 36.8369372975903 39.0 36.0 40.0 30.0 41.0 27 36.771938721890805 39.0 35.0 40.0 30.0 41.0 28 36.58324414169992 39.0 35.0 40.0 30.0 41.0 29 36.41651766824031 39.0 35.0 40.0 30.0 41.0 30 36.23548561733055 38.0 35.0 40.0 30.0 41.0 31 35.98246416432279 38.0 35.0 40.0 29.0 41.0 32 35.8444968070778 38.0 35.0 40.0 29.0 41.0 33 35.66403378496105 38.0 34.0 40.0 27.0 41.0 34 35.551455966989415 38.0 34.0 40.0 27.0 41.0 35 35.31315562764637 38.0 34.0 40.0 26.0 41.0 36 35.160292576213905 38.0 34.0 40.0 25.0 41.0 37 35.009853601267764 38.0 33.0 40.0 25.0 41.0 38 34.918120697713654 38.0 33.0 40.0 25.0 41.0 39 34.82586094125521 38.0 33.0 40.0 24.0 41.0 40 34.688476440963434 38.0 33.0 40.0 24.0 41.0 41 34.485510162314945 38.0 33.0 40.0 23.0 41.0 42 34.2628162845946 38.0 33.0 40.0 22.0 41.0 43 33.92313444290491 38.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 4.0 12 5.0 13 5.0 14 8.0 15 15.0 16 47.0 17 106.0 18 273.0 19 565.0 20 1373.0 21 2620.0 22 4875.0 23 8366.0 24 13268.0 25 20336.0 26 28990.0 27 40103.0 28 54025.0 29 69657.0 30 87823.0 31 108241.0 32 132592.0 33 161924.0 34 197329.0 35 238638.0 36 302311.0 37 397633.0 38 510666.0 39 510850.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.294447163982625 21.55018515906533 13.749235994147924 23.40613168280413 2 19.202889532359276 23.690369516097363 34.63352609788678 22.473214853656582 3 19.63705919282263 24.837795680635875 32.70629540822112 22.81884971832038 4 13.79338239564579 16.55092496563702 36.58039277506285 33.07529986365434 5 12.249848581645606 38.97746977855584 35.20995295659894 13.562728683199616 6 32.08509988080126 37.940634325365544 13.480727693103342 16.49353810072985 7 26.10480086066469 33.01137919304388 21.483498856411153 19.400321089880276 8 27.162897110191075 34.32394816099297 18.78361971453146 19.729535014284487 9 24.617651369955833 14.293719802755122 21.567193796134198 39.521435031154844 10 16.525031735627703 27.626209618315123 33.504214823234626 22.344543822822548 11 33.38263072451262 22.648106510021268 23.344008673022092 20.625254092444017 12 21.171431850677994 27.505870054012792 30.537694181939866 20.785003913369344 13 31.181360469714946 21.139799934177958 26.017718021688086 21.66112157441901 14 20.574954159648875 23.151036697171588 27.486648911308947 28.78736023187059 15 22.84457009632696 29.684738689256353 25.425941905133286 22.044749309283397 16 22.022693393734738 28.48085906062542 26.39685160448143 23.099595941158412 17 21.949265862973995 26.957272367740558 26.83451287539998 24.258948893885464 18 22.82728489605372 25.92206172337595 29.270066734701217 21.980586645869113 19 22.94924926918173 25.094238911889725 30.209759362355875 21.74675245657266 20 23.677613038295707 24.803882117699768 30.100171192623502 21.41833365138102 21 22.493853382782834 25.71076743523581 30.57050149205849 21.224877689922867 22 21.418748496187575 26.164089097601924 29.963756392067058 22.453406014143443 23 22.37534604970947 26.25255475260039 30.942098727532695 20.43000047015745 24 22.37949449777505 26.466061546375503 28.317583058844352 22.836860897005096 25 22.186660803526735 26.425303044131194 29.72757141553345 21.660464736808628 26 21.924167752177244 27.215202126217914 29.643530771804933 21.217099349799906 27 21.10796059527464 27.206939800487305 29.079964102096074 22.605135502141984 28 21.486713903661975 26.75016109806655 29.457438305663185 22.305686692608294 29 21.965859655236308 26.852282061280874 28.848999256044983 22.332859027437834 30 21.716572496895576 26.887025313830097 30.556223916632785 20.840178272641538 31 22.231671465038264 26.81017531341525 30.20301813424931 20.755135087297173 32 21.725837364242036 26.51833199200179 29.33208603328162 22.423744610474554 33 21.37145618823998 26.631722905794277 29.99545744936819 22.001363456597552 34 20.89469579430335 26.98143707772256 30.493858914046925 21.63000821392717 35 20.478468171723623 28.917172085922655 29.35379624482481 21.25056349752891 36 22.688761301063938 26.717768632754485 29.102884277658397 21.49058578852318 37 21.443777466183235 27.303218366009276 29.294093163081026 21.958911004726463 38 21.395033201412687 25.869894988951298 30.697616854867928 22.037454954768087 39 20.83692865499017 25.84808106620646 31.399361415561106 21.91562886324226 40 19.85958886114038 26.521719891255348 30.97580486806552 22.642886379538748 41 21.078610325210672 25.223947054740155 31.213199808618263 22.48424281143091 42 19.874246710972095 27.14377967868887 30.59639472206781 22.385578888271233 43 20.237132205508587 26.61481797992704 30.071235767366094 23.076814047198276 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 153.0 1 320.0 2 487.0 3 1157.0 4 1827.0 5 1827.0 6 2920.5 7 4014.0 8 4605.5 9 5197.0 10 8045.5 11 10894.0 12 10894.0 13 21210.0 14 31526.0 15 49781.5 16 68037.0 17 62271.0 18 56505.0 19 56505.0 20 60004.5 21 63504.0 22 51030.5 23 38557.0 24 43165.0 25 47773.0 26 47773.0 27 52815.5 28 57858.0 29 63750.0 30 69642.0 31 78672.0 32 87702.0 33 87702.0 34 99285.0 35 110868.0 36 122756.0 37 134644.0 38 144072.0 39 153500.0 40 153500.0 41 158208.0 42 162916.0 43 174509.5 44 186103.0 45 192187.0 46 198271.0 47 198271.0 48 246514.5 49 294758.0 50 279189.0 51 263620.0 52 242226.0 53 220832.0 54 220832.0 55 197290.0 56 173748.0 57 148074.0 58 122400.0 59 108116.0 60 93832.0 61 93832.0 62 82549.5 63 71267.0 64 61888.5 65 52510.0 66 44810.0 67 37110.0 68 37110.0 69 31898.5 70 26687.0 71 22452.5 72 18218.0 73 14886.5 74 11555.0 75 11555.0 76 9363.0 77 7171.0 78 5619.5 79 4068.0 80 3232.5 81 2397.0 82 2397.0 83 1807.5 84 1218.0 85 922.5 86 627.0 87 485.0 88 343.0 89 343.0 90 263.0 91 183.0 92 131.0 93 79.0 94 55.5 95 32.0 96 32.0 97 20.5 98 9.0 99 7.5 100 6.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2892648.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 47.24972718424008 #Duplication Level Percentage of deduplicated Percentage of total 1 79.98122103472627 37.79090873753221 2 11.300757386965158 10.67915407018779 3 3.61784635999737 5.128267605131153 4 1.521409849962135 2.8754480138450607 5 0.8304842486595514 1.9620077089986203 6 0.5058822554883923 1.4341679135504746 7 0.342156814878782 1.1316771310075693 8 0.2538354221621695 0.9594923557487133 9 0.18541057192595123 0.7884539046517607 >10 1.2123835118247968 11.06467033593449 >50 0.13344685518380858 4.362166651069985 >100 0.09822432675444868 9.239879545369293 >500 0.010533107349555378 3.3832237535024463 >1k 0.005671673188217288 4.5075426852647125 >5k 4.4194856012082765E-4 1.351723355232955 >10k+ 2.946323734138851E-4 3.3412162329727693 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 33135 1.1454902221079093 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 27894 0.9643067528437611 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 22432 0.7754832250588388 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12542 0.43358196365406365 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 7475 0.25841374408500445 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 6928 0.23950373498607502 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 6847 0.23670353254180942 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 6060 0.2094966273117227 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 5948 0.2056247424505159 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 5581 0.1929374054499545 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 3745 0.1294661500466009 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 3726 0.1288093124362176 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3597 0.12434973076572053 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 3451 0.11930245228593316 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 3324 0.11491201141652907 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3240 0.11200809777062401 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 3.457040054648889E-5 0.0 2 0.0 0.0 0.0 3.457040054648889E-5 0.0 3 0.0 0.0 0.0 3.457040054648889E-5 0.0 4 0.0 0.0 0.0 3.457040054648889E-5 0.0 5 0.0 0.0 0.0 3.457040054648889E-5 0.0 6 0.0 0.0 0.0 3.457040054648889E-5 3.457040054648889E-5 7 0.0 0.0 0.0 1.3828160218595556E-4 3.457040054648889E-5 8 0.0 0.0 0.0 1.7285200273244446E-4 3.457040054648889E-5 9 0.0 0.0 0.0 7.259784114762667E-4 3.457040054648889E-5 10 3.457040054648889E-5 0.0 0.0 8.642600136622223E-4 3.457040054648889E-5 11 6.914080109297778E-5 0.0 0.0 0.0010716824169411557 3.457040054648889E-5 12 6.914080109297778E-5 0.0 0.0 0.0013136752207665778 3.457040054648889E-5 13 6.914080109297778E-5 0.0 0.0 0.0013482456213130668 3.457040054648889E-5 14 6.914080109297778E-5 0.0 0.0 0.0014865272234990223 3.457040054648889E-5 15 6.914080109297778E-5 0.0 0.0 0.0016939496267779556 3.457040054648889E-5 16 1.0371120163946668E-4 0.0 0.0 0.0021433648338823113 3.457040054648889E-5 17 1.0371120163946668E-4 0.0 0.0 0.002523639239893689 3.457040054648889E-5 18 1.0371120163946668E-4 0.0 0.0 0.002834772844812089 3.457040054648889E-5 19 1.0371120163946668E-4 0.0 0.0 0.0033878992535559113 3.457040054648889E-5 20 1.0371120163946668E-4 0.0 0.0 0.006153531297275023 3.457040054648889E-5 21 1.0371120163946668E-4 0.0 0.0 0.010025416158481779 6.914080109297778E-5 22 1.0371120163946668E-4 0.0 0.0 0.015452969044280535 6.914080109297778E-5 23 1.0371120163946668E-4 0.0 0.0 0.01846059389182507 6.914080109297778E-5 24 1.0371120163946668E-4 0.0 0.0 0.024130139581449248 6.914080109297778E-5 25 1.0371120163946668E-4 0.0 0.0 0.029281129262876092 6.914080109297778E-5 26 1.0371120163946668E-4 0.0 0.0 0.037647166195126404 6.914080109297778E-5 27 1.0371120163946668E-4 0.0 0.0 0.09257953266349725 6.914080109297778E-5 28 1.0371120163946668E-4 0.0 0.0 0.2032048144122617 6.914080109297778E-5 29 1.0371120163946668E-4 0.0 0.0 0.3433532182277277 6.914080109297778E-5 30 1.0371120163946668E-4 0.0 0.0 0.538537699713204 6.914080109297778E-5 31 1.0371120163946668E-4 0.0 0.0 0.7677740257369718 6.914080109297778E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9690 0.0 22.891127 1 GTATTGG 1095 0.0 20.273973 1 GTATTAG 910 0.0 16.263735 1 ATTGGAC 1465 0.0 16.163822 3 TAATACT 920 0.0 15.88587 4 TTAACGG 585 0.0 15.811965 35 TGGACCC 1645 0.0 15.519757 5 AATACTG 965 0.0 15.145078 5 TTGGACC 1835 0.0 15.021799 4 AGTACCG 325 0.0 14.8 5 GTATCAA 15430 0.0 14.387557 2 GGACCCT 1740 0.0 14.247127 6 ATACTGG 820 0.0 14.213415 6 TAACGGC 640 0.0 14.1640625 36 ACCGTTA 510 0.0 14.1470585 8 GGTAAAC 750 0.0 14.060001 35 CTAATAC 900 0.0 13.9777775 3 GTGACAC 795 0.0 13.962263 24 ATTAGAG 875 0.0 13.954286 3 TATTAGA 975 0.0 13.661538 2 >>END_MODULE