##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088454_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1924740 Sequences flagged as poor quality 0 Sequence length 43 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.5120057774037 31.0 31.0 34.0 30.0 34.0 2 31.645818656026268 31.0 31.0 34.0 30.0 34.0 3 31.814159834575058 31.0 31.0 34.0 30.0 34.0 4 35.521285472323534 37.0 35.0 37.0 33.0 37.0 5 35.38041761484668 37.0 35.0 37.0 33.0 37.0 6 35.43864729781685 37.0 35.0 37.0 33.0 37.0 7 35.30704250963767 37.0 35.0 37.0 32.0 37.0 8 35.323023888940845 37.0 35.0 37.0 32.0 37.0 9 36.91606087055914 39.0 37.0 39.0 33.0 39.0 10 36.74648264181136 39.0 35.0 39.0 32.0 39.0 11 36.7751150804784 39.0 37.0 39.0 32.0 39.0 12 36.642742915926306 39.0 35.0 39.0 32.0 39.0 13 36.642988143853195 39.0 35.0 39.0 32.0 39.0 14 37.69828652181593 39.0 37.0 41.0 32.0 41.0 15 37.71035308665066 39.0 37.0 41.0 32.0 41.0 16 37.589664578072885 39.0 36.0 41.0 32.0 41.0 17 37.597300414601456 39.0 36.0 41.0 32.0 41.0 18 37.460920436006944 39.0 36.0 41.0 32.0 41.0 19 37.52216195434188 39.0 36.0 41.0 32.0 41.0 20 37.412350759063564 39.0 36.0 41.0 32.0 41.0 21 37.25869987634694 39.0 36.0 41.0 31.0 41.0 22 37.160762492596405 39.0 36.0 40.0 31.0 41.0 23 36.98868158816256 39.0 36.0 40.0 31.0 41.0 24 37.220030757401 39.0 36.0 41.0 31.0 41.0 25 37.19661304903519 39.0 36.0 41.0 31.0 41.0 26 37.04850836996166 39.0 36.0 41.0 31.0 41.0 27 36.99503205627773 39.0 36.0 41.0 31.0 41.0 28 36.83977784012386 39.0 36.0 40.0 30.0 41.0 29 36.700003636854845 39.0 35.0 40.0 30.0 41.0 30 36.57367384685724 39.0 35.0 40.0 30.0 41.0 31 36.38500213015784 39.0 35.0 40.0 30.0 41.0 32 36.25791535480117 38.0 35.0 40.0 30.0 41.0 33 36.09448808670262 38.0 35.0 40.0 29.0 41.0 34 36.024746199486685 38.0 35.0 40.0 29.0 41.0 35 35.817242848384716 38.0 35.0 40.0 28.0 41.0 36 35.69208620385091 38.0 34.0 40.0 27.0 41.0 37 35.56848457453994 38.0 34.0 40.0 27.0 41.0 38 35.53004561655081 38.0 34.0 40.0 26.0 41.0 39 35.47645188441036 38.0 34.0 40.0 26.0 41.0 40 35.42173904007814 38.0 34.0 40.0 26.0 41.0 41 35.27735434396334 38.0 34.0 40.0 25.0 41.0 42 35.12115350644763 38.0 34.0 40.0 25.0 41.0 43 34.809361783929255 38.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 2.0 14 9.0 15 9.0 16 35.0 17 56.0 18 169.0 19 337.0 20 724.0 21 1441.0 22 2643.0 23 4520.0 24 7052.0 25 10733.0 26 15718.0 27 22143.0 28 29864.0 29 39867.0 30 51761.0 31 65385.0 32 81373.0 33 100936.0 34 124522.0 35 155169.0 36 198291.0 37 262926.0 38 364997.0 39 384056.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.37997859451147 20.941581720128433 12.73023888940844 24.94820079595166 2 19.038987083969783 22.67766035932126 34.88829660109937 23.39505595560959 3 19.055924436547276 24.797686960316717 31.616322204557502 24.53006639857851 4 13.969782931720648 16.53953261219697 36.95823851533194 32.532445940750435 5 12.825680351631908 38.10997849060133 35.64263225162879 13.421708906137972 6 32.56839884867567 38.06669991791099 14.354094579008073 15.01080665440527 7 27.298336398682423 31.906075625798806 22.064954227583986 18.730633747934785 8 26.58587653397342 34.88351673472781 19.288007730914305 19.242599000384466 9 25.511030061203073 14.120348722424847 20.6193044255328 39.74931679083929 10 16.141037231002628 27.222274177291478 34.17739538846805 22.45929320323784 11 34.31445286116566 22.37148913619502 22.880181219281564 20.433876783357753 12 21.08700395897628 26.766628219915418 30.422342757982896 21.72402506312541 13 30.29666344545237 21.076093394432494 25.481259806519326 23.14598335359581 14 21.128308239034883 21.975383688186454 26.894229870008417 30.002078202770242 15 23.721593565884223 29.046416658873408 24.23537724575787 22.9966125294845 16 23.187859139416233 27.88548063634569 25.2675166515997 23.65914357263838 17 22.48708916528986 26.947379905857417 26.4193605370076 24.146170391845132 18 22.942371437181126 26.428816359612206 27.94928146139219 22.67953074181448 19 23.674158587653395 25.34731963797708 28.50582416326361 22.472697611105914 20 23.84405166412087 25.480428525411224 28.396095056994714 22.279424753473194 21 23.064258029655953 26.054999636314513 28.366740442865012 22.51400189116452 22 22.462202687116182 26.500150669700844 28.139488969938796 22.898157673244178 23 23.014173342893066 26.370522771906856 28.703980797406402 21.911323087793676 24 23.183339048390952 26.59917703170298 26.947224040649647 23.270259879256418 25 23.11543377287322 26.260585845360936 28.014537028377855 22.609443353387988 26 22.77938838492472 26.95392624458368 27.86625726072093 22.40042810977067 27 22.461371406008084 26.998295873728402 27.335224497854256 23.205108222409258 28 22.534472188451428 26.458482704157444 28.075584234753787 22.931460872637345 29 23.0540228810125 26.595072581231747 27.583154088344397 22.767750449411352 30 22.833161881604788 26.463106705321238 28.41183744297931 22.291893970094662 31 22.90470401197045 26.468458077454613 28.493718632126935 22.133119278448 32 22.335120587715743 26.3402849215998 28.103639972152084 23.220954518532373 33 22.325404989764852 26.340232966530547 28.489042675893888 22.845319367810717 34 22.300154826106382 26.38777185489988 28.65966312333094 22.652410195662792 35 22.10568700188077 27.551461496098174 27.891455469310138 22.45139603271091 36 23.43350270685911 26.297525899602025 27.623782952502673 22.645188441036193 37 22.52428899487723 26.28708293068155 27.95847750865052 23.230150565790705 38 22.445992705508278 25.63000716979956 28.97284828080676 22.95115184388541 39 21.946029074056757 25.8285794444964 29.28499433689745 22.940397144549394 40 21.43796045180128 26.078119642133483 29.318401446429128 23.165518459636107 41 22.0404314348951 25.142980350592808 29.482371645001404 23.334216569510687 42 21.165871754107048 26.405488533516213 29.162951879214855 23.265687833161884 43 21.488097093633428 25.67775387844592 29.037688207238382 23.796460820682274 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 273.0 1 303.0 2 333.0 3 683.0 4 1033.0 5 1033.0 6 1508.5 7 1984.0 8 2157.0 9 2330.0 10 3468.5 11 4607.0 12 4607.0 13 8524.5 14 12442.0 15 18909.0 16 25376.0 17 24265.5 18 23155.0 19 23155.0 20 25601.0 21 28047.0 22 24629.0 23 21211.0 24 24815.5 25 28420.0 26 28420.0 27 32721.0 28 37022.0 29 42275.0 30 47528.0 31 55607.5 32 63687.0 33 63687.0 34 73363.0 35 83039.0 36 90928.0 37 98817.0 38 105168.5 39 111520.0 40 111520.0 41 115323.0 42 119126.0 43 126406.5 44 133687.0 45 133475.0 46 133263.0 47 133263.0 48 149118.0 49 164973.0 50 160043.5 51 155114.0 52 146144.5 53 137175.0 54 137175.0 55 128517.0 56 119859.0 57 106713.0 58 93567.0 59 85416.5 60 77266.0 61 77266.0 62 68947.5 63 60629.0 64 53064.0 65 45499.0 66 38708.0 67 31917.0 68 31917.0 69 27319.0 70 22721.0 71 19198.0 72 15675.0 73 12853.0 74 10031.0 75 10031.0 76 7974.5 77 5918.0 78 4651.0 79 3384.0 80 2674.5 81 1965.0 82 1965.0 83 1475.5 84 986.0 85 765.5 86 545.0 87 426.5 88 308.0 89 308.0 90 244.5 91 181.0 92 129.0 93 77.0 94 57.0 95 37.0 96 37.0 97 22.5 98 8.0 99 6.5 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1924740.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 55.17485636280259 #Duplication Level Percentage of deduplicated Percentage of total 1 82.89641825962167 45.73797970465432 2 9.785025228983352 10.797747230311119 3 2.811471605182604 4.653676259521447 4 1.2722403626150307 2.807827170649768 5 0.7256639350889937 2.0019201693100666 6 0.4278264948106927 1.4163159239628766 7 0.3154122877823398 1.2181979371417488 8 0.23292817129035281 1.0281422715036395 9 0.1876295961241789 0.931719241400601 >10 1.1709788014495888 12.237583114554361 >50 0.10166288578555632 3.8735686651333685 >100 0.0631893583054517 7.117142395395044 >500 0.007188405791977384 2.627863511677267 >1k 0.0020808543082039797 1.9130094875891883 >5k 9.458428673654453E-5 0.45986959120047816 >10k+ 1.8916857347308906E-4 1.1774373259946878 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 11889 0.6176938183858599 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 10673 0.5545164541704334 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 8812 0.4578280702848177 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4673 0.24278603863378947 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 2658 0.13809657408273324 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 2303 0.11965252449681515 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 2281 0.1185095129731808 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 2270 0.1179380072113636 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 2055 0.10676766732130054 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 5.195506925610732E-5 0.0 0.0 0.0 0.0 7 1.0391013851221464E-4 0.0 0.0 0.0 0.0 8 1.0391013851221464E-4 0.0 0.0 5.195506925610732E-5 0.0 9 1.0391013851221464E-4 0.0 0.0 1.5586520776832196E-4 0.0 10 1.5586520776832196E-4 0.0 0.0 2.0782027702442927E-4 0.0 11 1.5586520776832196E-4 0.0 0.0 2.0782027702442927E-4 0.0 12 1.5586520776832196E-4 0.0 0.0 2.0782027702442927E-4 0.0 13 1.5586520776832196E-4 0.0 0.0 2.0782027702442927E-4 0.0 14 1.5586520776832196E-4 0.0 0.0 3.117304155366439E-4 0.0 15 1.5586520776832196E-4 0.0 0.0 3.117304155366439E-4 0.0 16 1.5586520776832196E-4 0.0 0.0 5.195506925610732E-4 0.0 17 1.5586520776832196E-4 0.0 0.0 6.754159003293951E-4 0.0 18 2.0782027702442927E-4 0.0 0.0 0.0010391013851221464 0.0 19 2.0782027702442927E-4 0.0 0.0 0.0014027868699148975 0.0 20 2.0782027702442927E-4 0.0 0.0 0.002441888255037044 0.0 21 2.0782027702442927E-4 0.0 0.0 0.004416180886769122 0.0 22 2.0782027702442927E-4 0.0 0.0 0.006754159003293951 0.0 23 2.0782027702442927E-4 0.0 0.0 0.00872845163502603 0.0 24 2.0782027702442927E-4 0.0 0.0 0.0127809470370024 0.0 25 2.0782027702442927E-4 0.0 0.0 0.016573667092698235 0.0 26 2.0782027702442927E-4 0.0 0.0 0.02327587102673608 0.0 27 2.0782027702442927E-4 0.0 0.0 0.0632293192846826 0.0 28 2.0782027702442927E-4 0.0 0.0 0.14781217203362532 0.0 29 2.0782027702442927E-4 0.0 0.0 0.24829327597493686 0.0 30 2.0782027702442927E-4 0.0 0.0 0.37937591570809565 0.0 31 2.0782027702442927E-4 0.0 0.0 0.5540488585471285 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 3355 0.0 23.324888 1 TGCGGTA 185 0.0 20.000002 36 GTATTGG 630 0.0 17.325397 1 TTCGCTA 100 5.881937E-6 16.650002 26 GTCTAGA 90 4.4484634E-5 16.444445 1 ATTAGAG 535 0.0 16.252337 3 TCGCTAC 115 1.2431847E-6 16.086956 27 TAATACT 745 0.0 15.644295 4 TTAACGG 370 0.0 15.500001 35 GTATTAG 640 0.0 15.03125 1 TCGGGTA 160 1.0975782E-8 15.03125 25 CTCTAAT 525 0.0 14.800001 1 GTATAGA 200 6.184564E-11 14.8 1 CCGGATT 75 0.0041057444 14.799999 31 CCGTATA 75 0.0041057444 14.799999 2 TATTAGA 580 0.0 14.672414 2 TAGCGAA 215 1.2732926E-11 14.627907 10 TTAAGAC 165 1.646913E-8 14.575757 3 TGGACCC 800 0.0 14.56875 5 ATACTGG 680 0.0 14.419118 6 >>END_MODULE