##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088447_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2182366 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.325571421109018 31.0 31.0 34.0 30.0 34.0 2 31.550121748597622 31.0 31.0 34.0 30.0 34.0 3 31.659006326161606 31.0 31.0 34.0 30.0 34.0 4 35.37011482033719 37.0 35.0 37.0 33.0 37.0 5 35.231292093076966 37.0 35.0 37.0 33.0 37.0 6 35.28625491782771 37.0 35.0 37.0 32.0 37.0 7 35.12910483392795 37.0 35.0 37.0 32.0 37.0 8 35.1632508021111 37.0 35.0 37.0 32.0 37.0 9 36.70123068266276 39.0 35.0 39.0 32.0 39.0 10 36.5336382623263 38.0 35.0 39.0 32.0 39.0 11 36.57607523211047 38.0 35.0 39.0 32.0 39.0 12 36.42149483633818 38.0 35.0 39.0 32.0 39.0 13 36.44659099344473 38.0 35.0 39.0 32.0 39.0 14 37.38865295738662 39.0 36.0 41.0 32.0 41.0 15 37.40216810562481 39.0 36.0 41.0 32.0 41.0 16 37.26955881827338 39.0 36.0 41.0 32.0 41.0 17 37.342415525168555 39.0 36.0 40.0 32.0 41.0 18 37.21257250158773 39.0 36.0 40.0 31.0 41.0 19 37.30499054695684 39.0 36.0 40.0 31.0 41.0 20 37.21239792042215 39.0 36.0 40.0 31.0 41.0 21 37.04848041071021 39.0 36.0 40.0 31.0 41.0 22 36.96349100013472 39.0 36.0 40.0 31.0 41.0 23 36.776121878731615 39.0 35.0 40.0 30.0 41.0 24 36.96145651096104 39.0 36.0 40.0 31.0 41.0 25 36.932661157660995 39.0 36.0 40.0 31.0 41.0 26 36.753769074481546 39.0 35.0 40.0 30.0 41.0 27 36.687315509864064 39.0 35.0 40.0 30.0 41.0 28 36.49800904156315 39.0 35.0 40.0 30.0 41.0 29 36.32026708627242 38.0 35.0 40.0 30.0 41.0 30 36.144422154670664 38.0 35.0 40.0 29.0 41.0 31 35.88816724600731 38.0 35.0 40.0 29.0 41.0 32 35.74552985154644 38.0 34.0 40.0 28.0 41.0 33 35.53973806410107 38.0 34.0 40.0 27.0 41.0 34 35.4246267582981 38.0 34.0 40.0 27.0 41.0 35 35.191710739628455 38.0 34.0 40.0 26.0 41.0 36 35.05004476792619 38.0 33.0 40.0 25.0 41.0 37 34.88176960234901 38.0 33.0 40.0 25.0 41.0 38 34.806870616569356 38.0 33.0 40.0 24.0 41.0 39 34.71806058195555 38.0 33.0 40.0 24.0 41.0 40 34.59854946420536 38.0 33.0 40.0 24.0 41.0 41 34.39522884795676 38.0 33.0 40.0 23.0 41.0 42 34.18022366550799 38.0 33.0 40.0 22.0 41.0 43 33.84358673109827 37.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 1.0 13 3.0 14 4.0 15 19.0 16 38.0 17 80.0 18 204.0 19 474.0 20 1071.0 21 2044.0 22 3863.0 23 6578.0 24 10452.0 25 15782.0 26 22699.0 27 31567.0 28 41952.0 29 54728.0 30 68342.0 31 84207.0 32 102573.0 33 124720.0 34 151035.0 35 182568.0 36 227796.0 37 300324.0 38 382908.0 39 366332.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.52630676980855 21.35860804283058 13.422863076129302 23.692222111231573 2 19.106373541376655 23.624039230816464 34.66398395136288 22.605603276444004 3 19.52633059715923 25.16809737688362 32.2707556844269 23.03481634153025 4 13.753238457710577 16.534806718946317 36.66424421934726 33.047710603995846 5 12.563703796705045 38.723018961988956 35.10240720392454 13.610870037381448 6 32.29971507987203 37.92878921317506 13.752734417599981 16.01876128935293 7 26.373119815832908 32.676691260769275 21.725365956031204 19.224822967366613 8 27.15566499844664 34.324764956932064 19.031913070493218 19.48765697412808 9 24.953651220739324 14.302183959977382 21.276724435772916 39.46744038351037 10 16.366732252976814 27.52741749092499 33.67950197171327 22.42634828438493 11 33.539378820967706 22.66365953281897 23.207839564949236 20.589122081264097 12 21.240800122435925 27.36979040179328 30.635282991029 20.75412648474179 13 31.153298759236534 21.02080952507508 25.908211546550852 21.917680169137533 14 20.854842863204432 22.72648125933047 27.489889413599734 28.928786463865364 15 23.033808261309055 29.450788731129425 25.24604030671299 22.26936270084853 16 22.259327720464853 28.226292015179855 26.195880984216213 23.31849928013908 17 21.991865709051552 26.865429538400065 26.86006838449646 24.28263636805192 18 22.932908595533473 25.844794136272288 29.11276110423275 22.1095361639615 19 23.077338998133218 24.99704449207878 29.941861264334214 21.983755245453786 20 23.614370825058675 24.974683439899632 29.85727416941063 21.553671565631063 21 22.693535364828815 25.681347674954612 30.09298165385641 21.53213530636016 22 21.67734468003992 26.196110093357394 29.65524572871828 22.471299497884406 23 22.57096197429762 26.202570971138663 30.382988004761803 20.843479049801914 24 22.627551932169034 26.433833738245553 28.092767207700263 22.845847121885146 25 22.45764459307009 26.26750050174902 29.352867484189176 21.921987420991712 26 22.188303886699114 27.051832735663954 29.388745975697933 21.371117401938996 27 21.46450228788388 27.06635825521475 28.912886289467487 22.556253167433876 28 21.75450863878928 26.667387596764247 29.29036651047533 22.287737253971148 29 22.284575547822868 26.754953110523168 28.65000646087778 22.310464880776184 30 22.022932908595532 26.860022562668224 29.95835712249916 21.158687406237085 31 22.502183410115443 26.752432909970185 29.784188353374276 20.961195326540093 32 22.031639055960365 26.43603318600088 29.027669969198566 22.504657788840184 33 21.702913260195587 26.578859824612373 29.649838752986433 22.068388162205608 34 21.426378526791563 26.887561481438038 29.922386987333933 21.76367300443647 35 20.849664996613768 28.741833404662646 28.960403525348177 21.44809807337541 36 22.886903479984568 26.854798874249326 28.69949403537262 21.55880361039349 37 21.8583867234002 27.25514418754691 28.802089108792934 22.084379980259957 38 21.676932283585796 26.18094306821129 30.050138244455788 22.09198640374713 39 21.230810963880486 26.148134639194343 30.572644551830447 22.048409845094728 40 20.372705586505653 26.77406081289756 30.27539835206377 22.577835248533017 41 21.53680913284023 25.512356772420393 30.451995678085158 22.49883841665422 42 20.369177305731487 27.220640350885233 29.93998256937654 22.470199774006744 43 20.750277451169968 26.654053444747582 29.479014977322777 23.116654126759673 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 124.0 1 236.5 2 349.0 3 853.0 4 1357.0 5 1357.0 6 2192.0 7 3027.0 8 3421.0 9 3815.0 10 5738.5 11 7662.0 12 7662.0 13 14746.5 14 21831.0 15 35028.5 16 48226.0 17 44115.0 18 40004.0 19 40004.0 20 42646.5 21 45289.0 22 36761.0 23 28233.0 24 32010.0 25 35787.0 26 35787.0 27 40195.0 28 44603.0 29 49231.5 30 53860.0 31 61140.0 32 68420.0 33 68420.0 34 77106.0 35 85792.0 36 94343.0 37 102894.0 38 109482.0 39 116070.0 40 116070.0 41 119538.0 42 123006.0 43 131100.0 44 139194.0 45 142959.0 46 146724.0 47 146724.0 48 178146.0 49 209568.0 50 200759.0 51 191950.0 52 178905.0 53 165860.0 54 165860.0 55 149480.0 56 133100.0 57 114325.0 58 95550.0 59 85700.5 60 75851.0 61 75851.0 62 67326.5 63 58802.0 64 51065.5 65 43329.0 66 37367.5 67 31406.0 68 31406.0 69 26717.0 70 22028.0 71 18601.0 72 15174.0 73 12553.5 74 9933.0 75 9933.0 76 7925.5 77 5918.0 78 4706.5 79 3495.0 80 2732.0 81 1969.0 82 1969.0 83 1500.0 84 1031.0 85 785.5 86 540.0 87 422.0 88 304.0 89 304.0 90 240.0 91 176.0 92 125.5 93 75.0 94 55.5 95 36.0 96 36.0 97 20.0 98 4.0 99 2.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2182366.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 52.86101914933815 #Duplication Level Percentage of deduplicated Percentage of total 1 82.41697113856587 43.566450895861806 2 10.431386568895858 11.028274503451055 3 2.9909472799968744 4.743135643277268 4 1.244399555396492 2.6312091490896736 5 0.6545592197894894 1.7300333725834018 6 0.39641676158303646 1.2572996415095703 7 0.2673430195650659 0.9892417133669583 8 0.2009700434502064 0.8498785052211746 9 0.15895761994773194 0.7562395612791248 >10 1.0394732221830294 10.81303770403405 >50 0.1088738962792083 3.975314764504117 >100 0.07839358560722526 8.125796817666185 >500 0.007306765032023884 2.678871413824861 >1k 0.003479411920011372 3.230371306331132 >5k 2.609558940008529E-4 0.8620576942394178 >10k+ 2.609558940008529E-4 2.762787313760157 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 23943 1.0971120334536004 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 19567 0.8965957130930376 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 16575 0.7594968030110439 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8462 0.3877443105326971 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 5234 0.23983144898701683 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 5052 0.23149187624807205 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 4594 0.2105054789160022 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 4148 0.19006894352276382 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 4024 0.18438703682150473 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 3761 0.17233589599544716 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 2865 0.1312795378960266 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2590 0.11867853513113748 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 2186 0.10016651652380948 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 4.582182823596042E-5 0.0 0.0 0.0 3 0.0 4.582182823596042E-5 0.0 0.0 0.0 4 0.0 9.164365647192084E-5 0.0 4.582182823596042E-5 0.0 5 0.0 9.164365647192084E-5 0.0 4.582182823596042E-5 4.582182823596042E-5 6 0.0 9.164365647192084E-5 0.0 4.582182823596042E-5 9.164365647192084E-5 7 0.0 9.164365647192084E-5 0.0 4.582182823596042E-5 9.164365647192084E-5 8 1.3746548470788125E-4 9.164365647192084E-5 0.0 4.582182823596042E-5 9.164365647192084E-5 9 1.3746548470788125E-4 9.164365647192084E-5 0.0 2.749309694157625E-4 9.164365647192084E-5 10 1.3746548470788125E-4 9.164365647192084E-5 0.0 2.749309694157625E-4 9.164365647192084E-5 11 1.3746548470788125E-4 9.164365647192084E-5 0.0 5.040401105955646E-4 9.164365647192084E-5 12 1.3746548470788125E-4 9.164365647192084E-5 0.0 5.49861938831525E-4 9.164365647192084E-5 13 1.3746548470788125E-4 9.164365647192084E-5 0.0 6.873274235394063E-4 1.3746548470788125E-4 14 1.3746548470788125E-4 9.164365647192084E-5 0.0 8.247929082472876E-4 1.3746548470788125E-4 15 1.3746548470788125E-4 9.164365647192084E-5 0.0 9.622583929551689E-4 1.3746548470788125E-4 16 1.3746548470788125E-4 1.3746548470788125E-4 0.0 0.0013288330188428522 1.3746548470788125E-4 17 1.3746548470788125E-4 1.3746548470788125E-4 0.0 0.0018328731294384169 1.3746548470788125E-4 18 1.3746548470788125E-4 1.3746548470788125E-4 0.0 0.0023369132400339813 1.3746548470788125E-4 19 1.3746548470788125E-4 1.3746548470788125E-4 0.0 0.003161706148281269 1.3746548470788125E-4 20 1.3746548470788125E-4 1.3746548470788125E-4 0.0 0.004857113793011804 1.3746548470788125E-4 21 1.3746548470788125E-4 1.3746548470788125E-4 0.0 0.008522860051888638 1.3746548470788125E-4 22 1.3746548470788125E-4 1.8328731294384168E-4 0.0 0.013654904814316205 1.3746548470788125E-4 23 1.3746548470788125E-4 1.8328731294384168E-4 0.0 0.016220927195529988 1.3746548470788125E-4 24 1.3746548470788125E-4 1.8328731294384168E-4 0.0 0.020390713565002386 1.3746548470788125E-4 25 1.3746548470788125E-4 1.8328731294384168E-4 0.0 0.024514678106238825 1.3746548470788125E-4 26 1.3746548470788125E-4 1.8328731294384168E-4 0.0 0.030883912231037324 1.3746548470788125E-4 27 1.3746548470788125E-4 1.8328731294384168E-4 0.0 0.07065725913985096 1.3746548470788125E-4 28 1.3746548470788125E-4 2.291091411798021E-4 0.0 0.15359476824693932 1.3746548470788125E-4 29 1.3746548470788125E-4 2.291091411798021E-4 0.0 0.2608178463190867 1.8328731294384168E-4 30 1.8328731294384168E-4 2.291091411798021E-4 0.0 0.4084557768953512 1.8328731294384168E-4 31 1.8328731294384168E-4 2.291091411798021E-4 0.0 0.5820288622531693 1.8328731294384168E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7155 0.0 21.227814 1 ACGTTTA 115 1.3460522E-10 20.913044 26 CGAATTA 90 9.4880306E-8 20.555555 15 TATGTCG 55 5.14513E-4 20.181818 5 GTATTGG 790 0.0 19.905064 1 TATACCG 95 3.6093952E-6 17.526316 5 GGACCGT 375 0.0 16.773333 6 TGTTACG 200 3.6379788E-12 15.725 16 TAATACT 725 0.0 15.565517 4 AGTTCCG 180 2.0190782E-10 15.416666 32 TTGGACC 1205 0.0 15.199171 4 TTATGCG 305 0.0 15.163934 4 TGGACCC 1165 0.0 15.085837 5 ATTGGAC 1025 0.0 14.800001 3 CCGAATT 125 2.9615112E-6 14.800001 14 GAACCGT 75 0.0041059777 14.8 6 CGTTATT 215 1.2732926E-11 14.627907 10 CTAATAC 635 0.0 14.566929 3 CGTGTCT 180 3.3342076E-9 14.388888 35 TACTGGT 605 0.0 14.371901 7 >>END_MODULE