##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088446_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3450561 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.323641575964025 31.0 31.0 34.0 30.0 34.0 2 31.539173485123143 31.0 31.0 34.0 30.0 34.0 3 31.648122145935112 31.0 31.0 34.0 30.0 34.0 4 35.35445975306624 37.0 35.0 37.0 33.0 37.0 5 35.2266095281318 37.0 35.0 37.0 33.0 37.0 6 35.28572687165942 37.0 35.0 37.0 32.0 37.0 7 35.12237923050773 37.0 35.0 37.0 32.0 37.0 8 35.16086543608416 37.0 35.0 37.0 32.0 37.0 9 36.68919604667183 39.0 35.0 39.0 32.0 39.0 10 36.53892627894421 38.0 35.0 39.0 32.0 39.0 11 36.57391740067774 38.0 35.0 39.0 32.0 39.0 12 36.41766947461587 38.0 35.0 39.0 32.0 39.0 13 36.441428799548824 38.0 35.0 39.0 32.0 39.0 14 37.372652157141985 39.0 36.0 41.0 32.0 41.0 15 37.391233193674886 39.0 36.0 41.0 32.0 41.0 16 37.248723903156616 39.0 36.0 40.0 32.0 41.0 17 37.33337361663799 39.0 36.0 40.0 32.0 41.0 18 37.21081673385864 39.0 36.0 40.0 31.0 41.0 19 37.29332940353757 39.0 36.0 40.0 31.0 41.0 20 37.2012304665821 39.0 36.0 40.0 31.0 41.0 21 37.043947346532924 39.0 36.0 40.0 31.0 41.0 22 36.95539305057931 39.0 36.0 40.0 31.0 41.0 23 36.75954083988082 39.0 35.0 40.0 30.0 41.0 24 36.94810264186027 39.0 36.0 40.0 31.0 41.0 25 36.912073717867905 39.0 36.0 40.0 30.0 41.0 26 36.727334192903704 39.0 35.0 40.0 30.0 41.0 27 36.664968971712135 39.0 35.0 40.0 30.0 41.0 28 36.47133234276977 39.0 35.0 40.0 30.0 41.0 29 36.28987692146291 38.0 35.0 40.0 30.0 41.0 30 36.10932396210355 38.0 35.0 40.0 29.0 41.0 31 35.83816660537229 38.0 35.0 40.0 28.0 41.0 32 35.69676640986784 38.0 34.0 40.0 27.0 41.0 33 35.484642352359515 38.0 34.0 40.0 27.0 41.0 34 35.35861675826047 38.0 34.0 40.0 26.0 41.0 35 35.11518416860331 38.0 34.0 40.0 25.0 41.0 36 34.966816120625026 38.0 33.0 40.0 25.0 41.0 37 34.79433721067386 38.0 33.0 40.0 24.0 41.0 38 34.720026685515776 38.0 33.0 40.0 24.0 41.0 39 34.62590546870494 38.0 33.0 40.0 24.0 41.0 40 34.49327225341039 38.0 33.0 40.0 23.0 41.0 41 34.281600586107594 38.0 33.0 40.0 22.0 41.0 42 34.03872037039774 38.0 33.0 40.0 21.0 41.0 43 33.71287654384316 37.0 32.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 5.0 14 10.0 15 21.0 16 64.0 17 148.0 18 334.0 19 777.0 20 1726.0 21 3405.0 22 6102.0 23 10633.0 24 16972.0 25 25465.0 26 37066.0 27 51183.0 28 67839.0 29 88502.0 30 110621.0 31 135047.0 32 162761.0 33 196341.0 34 238498.0 35 288424.0 36 360966.0 37 475135.0 38 599975.0 39 572539.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.852324882823396 21.09929370905195 13.57950199981974 23.46887940830491 2 19.143785604717607 23.446622157962143 34.80529687781204 22.604295359508207 3 19.842164795811463 24.82749906464485 32.37302571958588 22.9573104199578 4 13.84183615359937 16.030349847459586 36.2482796275736 33.879534371367434 5 12.601400178115965 38.558193870503956 34.960170244780485 13.880235706599594 6 32.66503620715588 37.20221146648328 13.257641293691083 16.87511103266976 7 26.46627606351547 32.66703588199136 21.26749824159028 19.599189812902885 8 27.470170792517507 33.96424523432566 18.74176402040132 19.82381995275551 9 24.692767350004825 14.263622639912757 21.38176951516 39.661840494922416 10 16.568899955688366 27.18891217978758 33.32394355584498 22.918244308679082 11 33.4796283850655 22.10854988507666 23.476878107646844 20.934943622210998 12 21.62836709740822 26.86325498955097 30.585287435869123 20.923090477171684 13 31.922200476965916 20.621400404166163 26.021565768580817 21.434833350287096 14 20.920366282468272 22.448088875982776 27.332135267279728 29.299409574269227 15 22.9363573053773 29.16905395963149 25.34390784570973 22.550680889281484 16 22.40754474417348 27.864773293386207 26.15826817726161 23.5694137851787 17 22.226356815601868 26.2037100633781 26.57208494502778 24.997848175992253 18 23.581237949423297 25.072618626362498 29.160736471547672 22.185406952666536 19 23.213587587641545 24.13201795302271 30.181324138306785 22.473070321028956 20 24.19991995504499 23.95111983239827 30.07328373560125 21.775676476955486 21 23.108677110765466 24.828455430870516 30.478319322568126 21.584548135795888 22 21.725713586863122 25.236418078103824 30.083658860109995 22.95420947492306 23 22.82808505631403 25.461251083519464 31.044604051341217 20.666059808825292 24 22.82782422916158 25.48800035704339 28.334204206214586 23.34997120758045 25 22.66364802708893 25.65310394454699 29.544123404860834 22.13912462350325 26 22.545058615106356 26.340586356827195 29.578233800242913 21.536121227823536 27 21.453902713210983 26.538786011897773 29.05327568473648 22.95403559015476 28 21.973789189641916 26.00435117651883 29.280021422603454 22.741838211235795 29 22.383374761379383 25.940593428141106 28.74949899451133 22.926532815968187 30 22.143355819531955 26.106682362665083 30.417807423198724 21.33215439460424 31 22.88468454839662 25.79852957243764 30.30185526353541 21.014930615630327 32 22.3524812342109 25.56619054119026 29.13091523378372 22.950412990815117 33 22.054152933392572 25.755985765792865 29.787156349358845 22.40270495145572 34 21.431616482073494 26.49186610525071 30.156400654850035 21.920116757825756 35 20.89497910629605 28.704897551441633 28.956074099255165 21.44404924300715 36 23.255696682365564 26.14015518056339 28.927875785995376 21.676272351075664 37 22.0951027963279 26.906059623348206 28.817082207791717 22.181755372532177 38 21.96793506910905 25.38381440003524 30.21360874362169 22.434641787234018 39 21.56898544903278 25.226419703926407 30.939896440028157 22.264698407012656 40 20.365644890787323 26.0764553937751 30.525007382857456 23.032892332580126 41 22.015028860524417 24.749453784471566 30.531991754384286 22.703525600619727 42 20.50950555576325 26.832564327945512 30.087658209780958 22.570271906510275 43 20.958765835468494 26.514094374798763 29.195745271565986 23.331394518166757 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 197.0 1 378.5 2 560.0 3 1452.5 4 2345.0 5 2345.0 6 3671.5 7 4998.0 8 5706.0 9 6414.0 10 9732.5 11 13051.0 12 13051.0 13 24585.5 14 36120.0 15 58995.5 16 81871.0 17 75114.5 18 68358.0 19 68358.0 20 71890.5 21 75423.0 22 59160.5 23 42898.0 24 48103.0 25 53308.0 26 53308.0 27 58167.5 28 63027.0 29 70007.5 30 76988.0 31 85301.5 32 93615.0 33 93615.0 34 104855.5 35 116096.0 36 128503.0 37 140910.0 38 151417.0 39 161924.0 40 161924.0 41 169662.0 42 177400.0 43 189796.5 44 202193.0 45 214559.0 46 226925.0 47 226925.0 48 296725.0 49 366525.0 50 349826.5 51 333128.0 52 309940.5 53 286753.0 54 286753.0 55 255440.0 56 224127.0 57 189335.5 58 154544.0 59 137824.0 60 121104.0 61 121104.0 62 107579.5 63 94055.0 64 82148.0 65 70241.0 66 60518.0 67 50795.0 68 50795.0 69 43892.5 70 36990.0 71 31646.5 72 26303.0 73 21843.5 74 17384.0 75 17384.0 76 14052.0 77 10720.0 78 8488.0 79 6256.0 80 4846.0 81 3436.0 82 3436.0 83 2603.5 84 1771.0 85 1344.5 86 918.0 87 693.0 88 468.0 89 468.0 90 356.0 91 244.0 92 180.0 93 116.0 94 78.5 95 41.0 96 41.0 97 29.5 98 18.0 99 10.5 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3450561.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 45.39132807176124 #Duplication Level Percentage of deduplicated Percentage of total 1 78.4307341245867 35.60075183558195 2 11.853659103140796 10.76106658402966 3 3.9327935578591795 5.3554416786988535 4 1.797842355095318 3.264258086457578 5 0.9335647469121902 2.1187871851660987 6 0.5701573596003139 1.5528119857288196 7 0.37366991033541336 1.1872961443406247 8 0.2790110749229025 1.0131746589984176 9 0.20067680421056336 0.819808799068285 >10 1.3775560599333756 12.079109701818888 >50 0.14129127276333536 4.422540301161217 >100 0.09341667365128122 8.460247937639595 >500 0.008902241891392207 2.784985825925408 >1k 0.0060202211347044135 5.2041733566754775 >5k 3.2022452844172417E-4 1.1912936759257746 >10k+ 3.84269434130069E-4 4.184252242783487 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 41852 1.2129042205021154 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 35400 1.0259201329870709 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 30093 0.8721190554231616 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14360 0.4161642121382581 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 11283 0.326990306793591 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 10945 0.31719479817919466 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 9636 0.2792589378944467 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 9369 0.271521065704968 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 7978 0.23120878025341385 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 7569 0.21935563521409995 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 6427 0.18625956764711593 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 4715 0.13664444709135704 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4439 0.12864574774942394 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 4398 0.12745753516602085 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 4382 0.12699384245054643 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 4327 0.12539989874110327 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 4210 0.12200914575919684 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 3758 0.10890982654704555 No Hit GTATTGGACCCTCGCATGTGCGTTGCTGCATTTTACTCTTCTC 3703 0.10731588283760235 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 3671 0.1063884974066536 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 3655 0.1059248046911792 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3481 0.1008821464103953 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 2.8980794717148894E-5 0.0 0.0 0.0 0.0 6 5.796158943429779E-5 0.0 0.0 0.0 2.8980794717148894E-5 7 5.796158943429779E-5 0.0 0.0 0.0 2.8980794717148894E-5 8 1.1592317886859558E-4 0.0 0.0 0.0 2.8980794717148894E-5 9 1.1592317886859558E-4 0.0 0.0 8.694238415144668E-5 2.8980794717148894E-5 10 1.1592317886859558E-4 0.0 0.0 1.7388476830289336E-4 2.8980794717148894E-5 11 1.4490397358574446E-4 0.0 0.0 2.898079471714889E-4 2.8980794717148894E-5 12 1.4490397358574446E-4 0.0 0.0 3.477695366057867E-4 2.8980794717148894E-5 13 1.4490397358574446E-4 0.0 0.0 3.477695366057867E-4 2.8980794717148894E-5 14 1.4490397358574446E-4 0.0 0.0 4.926735101915312E-4 2.8980794717148894E-5 15 1.4490397358574446E-4 0.0 0.0 7.535006626458712E-4 2.8980794717148894E-5 16 1.4490397358574446E-4 0.0 0.0 0.0012751549675545514 2.8980794717148894E-5 17 1.4490397358574446E-4 0.0 0.0 0.0017678284777460824 2.8980794717148894E-5 18 1.4490397358574446E-4 0.0 0.0 0.002405405961523358 2.8980794717148894E-5 19 1.4490397358574446E-4 0.0 0.0 0.0036225993396436116 2.8980794717148894E-5 20 1.7388476830289336E-4 0.0 0.0 0.005883101327581225 2.8980794717148894E-5 21 1.7388476830289336E-4 0.0 0.0 0.010288182124587857 2.8980794717148894E-5 22 1.7388476830289336E-4 0.0 0.0 0.015330840405371764 2.8980794717148894E-5 23 1.7388476830289336E-4 0.0 0.0 0.01933019007633831 2.8980794717148894E-5 24 1.7388476830289336E-4 0.0 0.0 0.02463367550957656 2.8980794717148894E-5 25 1.7388476830289336E-4 0.0 0.0 0.02935754504847183 2.8980794717148894E-5 26 2.0286556302004225E-4 0.0 0.0 0.03677662849606195 2.8980794717148894E-5 27 2.0286556302004225E-4 0.0 0.0 0.0814360331551884 2.8980794717148894E-5 28 2.0286556302004225E-4 0.0 0.0 0.17411661466063055 2.8980794717148894E-5 29 2.0286556302004225E-4 0.0 0.0 0.290793294191872 2.8980794717148894E-5 30 2.0286556302004225E-4 0.0 0.0 0.44720264328032455 2.8980794717148894E-5 31 2.0286556302004225E-4 0.0 0.0 0.628680379799111 2.8980794717148894E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11940 0.0 22.83836 1 GTATTGG 2160 0.0 18.07176 1 GTATTAG 900 0.0 17.061111 1 ATACTGG 835 0.0 16.616766 6 ATTGGAC 2440 0.0 16.37705 3 TAATACT 995 0.0 16.175879 4 ATTAGAG 910 0.0 15.857142 3 TTGGACC 2955 0.0 15.714045 4 ACGTTTA 165 9.767973E-10 15.69697 26 ACCGTTA 460 0.0 15.684783 8 TTAACGG 660 0.0 15.416667 35 TGGACCC 2955 0.0 15.275804 5 TATTAGA 990 0.0 15.136364 2 TACTGGT 980 0.0 14.913265 7 TGTTACG 360 0.0 14.902779 16 ACCGCCT 870 0.0 14.885058 12 GTATCAA 18605 0.0 14.626983 2 CTAATAC 900 0.0 14.594444 3 TTATGCG 355 0.0 14.591549 4 TCTAATA 875 0.0 14.588572 2 >>END_MODULE