##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088445_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3155851 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.272925432791347 31.0 31.0 33.0 30.0 34.0 2 31.495668838611202 31.0 31.0 34.0 30.0 34.0 3 31.599978579470324 31.0 31.0 34.0 30.0 34.0 4 35.311888932652394 37.0 35.0 37.0 33.0 37.0 5 35.189256717126376 37.0 35.0 37.0 33.0 37.0 6 35.24917114274407 37.0 35.0 37.0 32.0 37.0 7 35.080565907579285 37.0 35.0 37.0 32.0 37.0 8 35.13286939085527 37.0 35.0 37.0 32.0 37.0 9 36.64995495668205 39.0 35.0 39.0 32.0 39.0 10 36.49993488285727 38.0 35.0 39.0 32.0 39.0 11 36.52911908705449 38.0 35.0 39.0 32.0 39.0 12 36.38611011736612 38.0 35.0 39.0 32.0 39.0 13 36.40437777322187 38.0 35.0 39.0 32.0 39.0 14 37.32453179823762 39.0 36.0 41.0 32.0 41.0 15 37.34412873104592 39.0 36.0 41.0 32.0 41.0 16 37.19642910897885 39.0 36.0 40.0 31.0 41.0 17 37.29342988626522 39.0 36.0 40.0 32.0 41.0 18 37.168894539064105 39.0 36.0 40.0 31.0 41.0 19 37.26503532644602 39.0 36.0 40.0 31.0 41.0 20 37.17385358180725 39.0 36.0 40.0 31.0 41.0 21 37.02249821046684 39.0 36.0 40.0 31.0 41.0 22 36.93460686198429 39.0 36.0 40.0 31.0 41.0 23 36.736277156304276 39.0 35.0 40.0 30.0 41.0 24 36.9170521675453 39.0 36.0 40.0 31.0 41.0 25 36.88879734816378 39.0 36.0 40.0 30.0 41.0 26 36.6979071572137 39.0 35.0 40.0 30.0 41.0 27 36.63151080326669 39.0 35.0 40.0 30.0 41.0 28 36.43399197237132 38.0 35.0 40.0 30.0 41.0 29 36.25113289569121 38.0 35.0 40.0 30.0 41.0 30 36.06261607407954 38.0 35.0 40.0 29.0 41.0 31 35.783900127097255 38.0 34.0 40.0 28.0 41.0 32 35.63646224108806 38.0 34.0 40.0 27.0 41.0 33 35.415945176118896 38.0 34.0 40.0 27.0 41.0 34 35.298906063689316 38.0 34.0 40.0 26.0 41.0 35 35.05619625261142 38.0 33.0 40.0 25.0 41.0 36 34.90265731810532 38.0 33.0 40.0 25.0 41.0 37 34.72226762290108 38.0 33.0 40.0 24.0 41.0 38 34.63643499011835 38.0 33.0 40.0 24.0 41.0 39 34.52742002078045 38.0 33.0 40.0 24.0 41.0 40 34.390137240319646 38.0 33.0 40.0 23.0 41.0 41 34.15836489111812 38.0 33.0 40.0 22.0 41.0 42 33.91872968654097 37.0 33.0 40.0 21.0 41.0 43 33.57564473100916 37.0 32.0 40.0 19.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 2.0 13 0.0 14 4.0 15 14.0 16 41.0 17 118.0 18 315.0 19 777.0 20 1638.0 21 3190.0 22 5841.0 23 9875.0 24 15948.0 25 23928.0 26 34353.0 27 47647.0 28 63541.0 29 82012.0 30 102260.0 31 125435.0 32 150415.0 33 183137.0 34 220742.0 35 265175.0 36 333912.0 37 438647.0 38 546489.0 39 500394.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.28154339352523 21.76164210540992 13.995020677465444 22.961793823599404 2 19.324961793189857 23.925178977080982 34.55882422839355 22.191035001335617 3 19.98963195664181 25.18563138754016 32.469783902978946 22.35495275283909 4 13.983676669145659 16.595491992492676 36.16035738062412 33.260473957737545 5 12.499259312305936 39.06692679724107 34.709655177002965 13.724158713450032 6 32.28688553420297 37.51539600570496 13.446642442878323 16.75107601721374 7 26.05103979877377 32.976778688220705 21.51676362413815 19.455417888867377 8 27.326702052790196 34.32684242697136 18.767552713990614 19.578902806247825 9 24.579392373087323 14.402454361755353 21.765444566299234 39.25270869885809 10 16.695338278011224 27.596043032449884 33.1354363688273 22.573182320711595 11 33.14250260864661 22.628983434262263 23.418659499450385 20.809854457640746 12 21.183509614363924 27.451010836696664 30.735069558100175 20.630409990839237 13 31.543377681645936 20.948961151841452 26.311920302954732 21.19574086355788 14 20.567352514424794 23.001941473155735 27.75818630220502 28.672519710214456 15 22.744324747904766 29.533396855554965 25.68977432711494 22.032504069425332 16 21.836994205366477 28.189924049012454 26.706742491961755 23.266339253659314 17 21.81478149633807 26.660257407589903 27.093547825927146 24.431413270144883 18 22.85247307303165 25.53013434411194 29.608178586378127 22.009213996478287 19 22.8276303285548 24.712922124650373 30.72283830890622 21.736609237888608 20 23.636287011015412 24.495326300259425 30.59029085973958 21.278095828985588 21 22.483856176986812 25.35221086166616 31.134930007785538 21.029002953561495 22 21.35005740131584 25.79047616633358 30.540320186219184 22.319146246131393 23 22.19350660091367 26.048092891584552 31.49001648049924 20.268384027002543 24 22.23165795850311 26.145942885136215 28.982737144434257 22.63966201192642 25 22.09480105366191 26.214830801580934 30.14188565936731 21.548482485389837 26 21.91358210511206 26.863879188212625 30.212548057560383 21.00999064911493 27 20.975546690892568 26.94243169275102 29.71344337866395 22.368578237692464 28 21.34093149518149 26.614437753873677 29.976003303071025 22.068627447873805 29 21.87752210101174 26.51402109922173 29.328792772535838 22.279664027230687 30 21.53517387227724 26.690613720356254 30.987045966365333 20.787166441001176 31 22.212360469489845 26.466965645716478 30.794990004280937 20.525683880512737 32 21.725740537179988 26.198828778671746 29.76550540567346 22.309925278474807 33 21.36399975790999 26.438130317305852 30.330709529695792 21.867160395088362 34 20.94233853245923 26.858302245574965 30.701322717707523 21.49803650425828 35 20.396812143539094 28.94236768465938 29.650164092030963 21.01065607977056 36 22.607753027630263 26.60366411468729 29.554278703272114 21.23430415441033 37 21.480576871341515 27.21494138981847 29.51397261784539 21.79050912099462 38 21.382219883004616 25.867190814775476 30.815428231560997 21.93516107065891 39 20.89902216549514 25.730999340589904 31.47686630325703 21.893112190657924 40 19.841906351091986 26.56706542862765 31.05102237082803 22.540005849452335 41 21.253886827990296 25.3394092433388 31.093863430180956 22.312840498489948 42 20.00468336432867 27.27657294339942 30.44754014051994 22.271203551751967 43 20.389714216545713 26.94205144666209 29.80343495304436 22.86479938374784 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 175.0 1 396.0 2 617.0 3 1482.5 4 2348.0 5 2348.0 6 3788.5 7 5229.0 8 6014.0 9 6799.0 10 10127.5 11 13456.0 12 13456.0 13 25944.0 14 38432.0 15 61476.5 16 84521.0 17 76267.5 18 68014.0 19 68014.0 20 71720.0 21 75426.0 22 59050.5 23 42675.0 24 47263.0 25 51851.0 26 51851.0 27 56609.5 28 61368.0 29 67596.5 30 73825.0 31 82110.0 32 90395.0 33 90395.0 34 101978.0 35 113561.0 36 125794.0 37 138027.0 38 147413.5 39 156800.0 40 156800.0 41 162278.0 42 167756.0 43 180497.0 44 193238.0 45 203854.5 46 214471.0 47 214471.0 48 272368.5 49 330266.0 50 312277.5 51 294289.0 52 271504.0 53 248719.0 54 248719.0 55 220194.5 56 191670.0 57 162359.0 58 133048.0 59 117597.5 60 102147.0 61 102147.0 62 90031.5 63 77916.0 64 67757.0 65 57598.0 66 49511.5 67 41425.0 68 41425.0 69 35365.5 70 29306.0 71 24608.5 72 19911.0 73 16509.0 74 13107.0 75 13107.0 76 10540.5 77 7974.0 78 6196.0 79 4418.0 80 3459.0 81 2500.0 82 2500.0 83 1867.0 84 1234.0 85 947.5 86 661.0 87 508.0 88 355.0 89 355.0 90 283.5 91 212.0 92 134.5 93 57.0 94 46.5 95 36.0 96 36.0 97 23.5 98 11.0 99 9.0 100 7.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3155851.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 45.944325179545636 #Duplication Level Percentage of deduplicated Percentage of total 1 79.15815541049184 36.36868032792647 2 11.61284102803519 10.670882889008356 3 3.8239946928453845 5.270725669588352 4 1.6302903128634867 2.9961035308505286 5 0.8736954490336823 2.0070673909146324 6 0.5448730919461588 1.5020295910775276 7 0.3619451414014165 1.1640527691592313 8 0.2590042124268615 0.9519819006889474 9 0.2073058581047089 0.8572074980748742 >10 1.2648979401948222 11.296105237181358 >50 0.1455564515127384 4.649414977947161 >100 0.10153116688163362 9.224516485773352 >500 0.009822229066260723 3.1352219399392838 >1k 0.005395308923694572 4.613721851854975 >5k 4.150237633611209E-4 1.4846334476622125 >10k+ 2.766825089074139E-4 3.807654492352784 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 41933 1.3287382705964255 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 34428 1.0909260291439615 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 28231 0.8945606113850115 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15221 0.48231047663530374 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 9193 0.2913001912954699 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 8531 0.27032328205609196 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 8030 0.2544480078432093 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 7520 0.23828754906362817 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 7048 0.2233312028989962 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 6394 0.20260779105223917 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4681 0.14832766185729301 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 4622 0.146458118586714 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 3860 0.12231249193957508 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 3827 0.12126681519501396 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3737 0.11841496952802903 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 3736 0.11838328235395144 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3530 0.11185572449396375 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 3442 0.10906725317513406 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 3267 0.10352199771155228 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 3.1687174077610125E-5 0.0 0.0 0.0 0.0 4 3.1687174077610125E-5 0.0 0.0 0.0 0.0 5 3.1687174077610125E-5 3.1687174077610125E-5 0.0 0.0 0.0 6 3.1687174077610125E-5 3.1687174077610125E-5 0.0 0.0 0.0 7 3.1687174077610125E-5 3.1687174077610125E-5 0.0 0.0 0.0 8 6.337434815522025E-5 3.1687174077610125E-5 0.0 0.0 0.0 9 9.506152223283039E-5 3.1687174077610125E-5 0.0 1.267486963104405E-4 0.0 10 9.506152223283039E-5 3.1687174077610125E-5 0.0 2.218102185432709E-4 0.0 11 1.267486963104405E-4 3.1687174077610125E-5 0.0 4.1193326300893165E-4 0.0 12 1.267486963104405E-4 3.1687174077610125E-5 0.0 5.703691333969823E-4 0.0 13 1.267486963104405E-4 3.1687174077610125E-5 0.0 6.020563074745925E-4 0.0 14 1.267486963104405E-4 3.1687174077610125E-5 0.0 7.604921778626431E-4 0.0 15 1.267486963104405E-4 3.1687174077610125E-5 0.0 8.238665260178633E-4 0.0 16 1.267486963104405E-4 3.1687174077610125E-5 0.0 0.0012991741371820153 0.0 17 1.267486963104405E-4 6.337434815522025E-5 0.0 0.001742794574268557 0.0 18 1.5843587038805065E-4 6.337434815522025E-5 0.0 0.0023765380558207596 0.0 19 1.9012304446566078E-4 6.337434815522025E-5 0.0 0.003295466104071453 0.0 20 1.9012304446566078E-4 6.337434815522025E-5 0.0 0.0059888759006683145 0.0 21 1.9012304446566078E-4 6.337434815522025E-5 0.0 0.011090510927163545 0.0 22 1.9012304446566078E-4 6.337434815522025E-5 0.0 0.018093376398315382 0.0 23 1.9012304446566078E-4 6.337434815522025E-5 0.0 0.022814765335879294 0.0 24 1.9012304446566078E-4 6.337434815522025E-5 0.0 0.02969088211072069 0.0 25 1.9012304446566078E-4 6.337434815522025E-5 0.0 0.034919265833526364 0.0 26 2.218102185432709E-4 6.337434815522025E-5 0.0 0.04467891544943028 0.0 27 2.218102185432709E-4 6.337434815522025E-5 0.0 0.09287510722147528 0.0 28 2.53497392620881E-4 6.337434815522025E-5 0.0 0.19487612057730228 0.0 29 2.53497392620881E-4 6.337434815522025E-5 0.0 0.3275186312661783 0.0 30 2.53497392620881E-4 6.337434815522025E-5 0.0 0.5056322367564248 0.0 31 2.53497392620881E-4 6.337434815522025E-5 0.0 0.7142605908834099 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11900 0.0 20.816385 1 TATACCG 205 0.0 18.951218 5 GTATTGG 1455 0.0 17.0378 1 TCTATAC 315 0.0 16.444445 3 GTATACG 150 4.6802597E-9 16.033333 1 ACCGTTA 570 0.0 15.578947 8 AATACTG 830 0.0 15.156627 5 CGAACTA 635 0.0 14.858268 24 TAATACT 890 0.0 14.758428 4 CCGTTTA 565 0.0 14.734512 27 TGGACCC 1995 0.0 14.558897 5 TTCGTTA 335 0.0 14.358209 30 GTTTAGG 455 0.0 14.23077 1 TTGGACC 2135 0.0 14.2107725 4 ATTGGAC 1860 0.0 14.024193 3 CGTTTAC 595 0.0 13.991597 28 GGACCGT 760 0.0 13.875 6 CCTATCG 80 0.0063018356 13.875 13 TTAACGG 455 0.0 13.824177 35 TACTGGT 795 0.0 13.729559 7 >>END_MODULE