##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088444_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2588351 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.23328945726449 31.0 31.0 33.0 30.0 34.0 2 31.45459174586445 31.0 31.0 34.0 30.0 34.0 3 31.558154593407153 31.0 31.0 34.0 30.0 34.0 4 35.28175235893432 37.0 35.0 37.0 33.0 37.0 5 35.1376285519236 35.0 35.0 37.0 32.0 37.0 6 35.20448810845206 37.0 35.0 37.0 32.0 37.0 7 35.03799677864401 37.0 35.0 37.0 32.0 37.0 8 35.07729786261601 37.0 35.0 37.0 32.0 37.0 9 36.595281706383716 39.0 35.0 39.0 32.0 39.0 10 36.425531931333886 38.0 35.0 39.0 32.0 39.0 11 36.46473295159737 38.0 35.0 39.0 32.0 39.0 12 36.31513191217111 38.0 35.0 39.0 32.0 39.0 13 36.340606432435166 38.0 35.0 39.0 32.0 39.0 14 37.25468609164677 39.0 36.0 40.0 32.0 41.0 15 37.27358963293618 39.0 36.0 40.0 32.0 41.0 16 37.12944534956812 39.0 36.0 40.0 31.0 41.0 17 37.21220151362779 39.0 36.0 40.0 31.0 41.0 18 37.08974207903024 39.0 36.0 40.0 31.0 41.0 19 37.177008064207676 39.0 36.0 40.0 31.0 41.0 20 37.08163073709864 39.0 36.0 40.0 31.0 41.0 21 36.928321158915466 39.0 36.0 40.0 31.0 41.0 22 36.83318259385995 39.0 36.0 40.0 30.0 41.0 23 36.64137514579746 39.0 35.0 40.0 30.0 41.0 24 36.831771656935246 39.0 35.0 40.0 30.0 41.0 25 36.79938153673903 39.0 35.0 40.0 30.0 41.0 26 36.59566921178774 39.0 35.0 40.0 30.0 41.0 27 36.52716459243742 39.0 35.0 40.0 30.0 41.0 28 36.330980999099424 38.0 35.0 40.0 30.0 41.0 29 36.14368646292562 38.0 35.0 40.0 29.0 41.0 30 35.96033227332769 38.0 35.0 40.0 29.0 41.0 31 35.68120204717212 38.0 34.0 40.0 27.0 41.0 32 35.53540381501581 38.0 34.0 40.0 27.0 41.0 33 35.32580473050216 38.0 34.0 40.0 27.0 41.0 34 35.199760387984476 38.0 34.0 40.0 26.0 41.0 35 34.951057256144935 38.0 33.0 40.0 25.0 41.0 36 34.80756628447996 38.0 33.0 40.0 25.0 41.0 37 34.62841361160059 38.0 33.0 40.0 24.0 41.0 38 34.54696947979621 38.0 33.0 40.0 24.0 41.0 39 34.45246181835462 38.0 33.0 40.0 23.0 41.0 40 34.318207615582274 38.0 33.0 40.0 23.0 41.0 41 34.10129769880515 38.0 33.0 40.0 22.0 41.0 42 33.869868112941404 37.0 33.0 40.0 21.0 41.0 43 33.52790444572626 37.0 32.0 40.0 19.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 3.0 13 2.0 14 10.0 15 13.0 16 53.0 17 131.0 18 286.0 19 662.0 20 1373.0 21 2789.0 22 5076.0 23 8627.0 24 13698.0 25 20528.0 26 29210.0 27 40413.0 28 53573.0 29 68942.0 30 86536.0 31 104880.0 32 126076.0 33 152893.0 34 183463.0 35 220540.0 36 274387.0 37 357130.0 38 447198.0 39 389857.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.15400113817639 21.6567613897806 13.875088811370636 23.314148660672373 2 19.402932600717598 23.825632613196586 34.40387335411619 22.36756143196962 3 19.93091354302411 25.04895974309512 32.39228373586117 22.627842978019597 4 14.114237211259214 16.64677626797911 36.11198790272262 33.12699861803905 5 12.554672839966448 38.86741017736775 34.871931975222836 13.705985007442964 6 32.40256054916817 37.61611157064865 13.520191040550527 16.461136839632644 7 26.327882114906366 32.816260236729875 21.497741225977464 19.3581164223863 8 27.313413057193557 34.34758268874662 18.81267262438518 19.526331629674644 9 24.693443818091133 14.357751325071444 21.530773840178554 39.418031016658865 10 16.636538089308598 27.619051666485728 33.22914859692522 22.51526164728045 11 33.37966914070001 22.58696753261053 23.270298348253384 20.763064978436077 12 21.234407543644583 27.355099829968964 30.639546182105903 20.770946444280547 13 31.52022272095245 20.928846203625397 26.010034960482564 21.54089611493959 14 20.73868652280931 22.849683060759535 27.556193112912432 28.855437303518727 15 22.951253520098316 29.59239299461317 25.2293834955151 22.226969989773412 16 22.042103254156796 28.185899053103697 26.352646916898053 23.41935077584145 17 22.00485946457803 26.771678184295716 26.960099306469644 24.263363044656614 18 23.062637177106197 25.517327441293702 29.283199998763692 22.13683538283641 19 23.004414779911997 24.786823734493506 30.30230444016287 21.90645704543163 20 23.692768098298878 24.638466730362303 30.205563310385646 21.46320186095317 21 22.67350911835373 25.45164855925645 30.597357159056095 21.277485163333722 22 21.607424958979674 25.8753932523062 30.06280832854586 22.45437346016827 23 22.414850227036442 26.12153452139992 30.83264209529542 20.63097315626822 24 22.407046030464954 26.267032562430675 28.507107420902344 22.818813986202027 25 22.330201738481374 26.149467363583994 29.714555715202458 21.805775182732173 26 22.062425072951854 26.936763986028172 29.696281532141505 21.304529408878473 27 21.243061702218906 26.92389865207617 29.25623302249193 22.576806623213002 28 21.637289532988376 26.60562651665095 29.554376512304554 22.20270743805612 29 22.09406684023921 26.513482908616336 28.949705816560428 22.44274443458403 30 21.910706855445802 26.696688354863774 30.424930776390063 20.96767401330036 31 22.4439034736788 26.423927821226716 30.247018275342104 20.88515042975238 32 21.89490528912037 26.280670589112525 29.409612529367152 22.41481159239995 33 21.615847309735038 26.39232468857585 29.870253300267237 22.12157470142187 34 21.16664239123674 26.897356656805822 30.303540748530626 21.632460203426813 35 20.737875195442967 28.819893437945627 29.2130781335298 21.2291532330816 36 22.800578437777567 26.6537652737206 29.12557068187429 21.42008560662754 37 21.7144429020639 27.177998656287343 29.148481021314343 21.959077420334413 38 21.61356786618198 25.85750541561017 30.349129619591782 22.17979709861607 39 21.081298479224802 25.817364028294463 31.07580849737922 22.025528995101514 40 20.24037698132904 26.53987036534071 30.621001556589505 22.59875109674074 41 21.52810805026057 25.35985266295027 30.695218693291597 22.416820593497558 42 20.276191289357588 27.15010444873976 30.182112086034703 22.391592175867956 43 20.67455302623176 26.705226609528616 29.589186319784293 23.031034044455332 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 145.0 1 316.0 2 487.0 3 1054.5 4 1622.0 5 1622.0 6 2688.5 7 3755.0 8 4379.5 9 5004.0 10 7537.0 11 10070.0 12 10070.0 13 19409.0 14 28748.0 15 46768.0 16 64788.0 17 58620.5 18 52453.0 19 52453.0 20 55726.5 21 59000.0 22 46977.5 23 34955.0 24 39001.5 25 43048.0 26 43048.0 27 47269.5 28 51491.0 29 57304.0 30 63117.0 31 70190.5 32 77264.0 33 77264.0 34 86705.5 35 96147.0 36 105360.5 37 114574.0 38 122263.5 39 129953.0 40 129953.0 41 134006.5 42 138060.0 43 147577.5 44 157095.0 45 164974.5 46 172854.0 47 172854.0 48 216128.0 49 259402.0 50 246908.0 51 234414.0 52 216212.0 53 198010.0 54 198010.0 55 177490.5 56 156971.0 57 134842.0 58 112713.0 59 100646.5 60 88580.0 61 88580.0 62 78822.0 63 69064.0 64 60173.5 65 51283.0 66 44794.5 67 38306.0 68 38306.0 69 32867.0 70 27428.0 71 23122.0 72 18816.0 73 15422.0 74 12028.0 75 12028.0 76 9727.5 77 7427.0 78 5869.5 79 4312.0 80 3338.0 81 2364.0 82 2364.0 83 1812.5 84 1261.0 85 971.0 86 681.0 87 507.5 88 334.0 89 334.0 90 269.0 91 204.0 92 139.0 93 74.0 94 55.0 95 36.0 96 36.0 97 22.0 98 8.0 99 6.5 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2588351.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 49.20313509202817 #Duplication Level Percentage of deduplicated Percentage of total 1 80.82917075228042 39.77048607901067 2 10.887600813405097 10.714081873000936 3 3.3827851789530863 4.993309084420182 4 1.4279082673061954 2.8103025350116244 5 0.7965795024294219 1.9597104434787713 6 0.48733709565767686 1.4387107771800798 7 0.31933504740902496 1.0998599834099834 8 0.24431606207881915 0.9616892966093185 9 0.18491237885973003 0.8188441881501233 >10 1.2089349742696103 11.636089361027867 >50 0.13044391391010896 4.3939122916879 >100 0.08794042523491505 8.43034731569794 >500 0.007752097168879592 2.5604292909370026 >1k 0.004271563746116996 3.6827991239192337 >5k 3.9551516167749966E-4 1.1907543319437874 >10k+ 3.164121293419997E-4 3.5386740245145187 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 32101 1.2402104660457567 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 26321 1.016902267119104 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 21354 0.8250040276608543 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11143 0.43050575443593236 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 6788 0.262251912511093 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 6323 0.2442868065420803 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 6312 0.24386182554066277 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 5822 0.22493085365933754 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 5349 0.20665667059838483 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 4796 0.1852917166180321 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3598 0.13900742210001657 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 3532 0.13645753609151157 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 3044 0.11760383348317133 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 2971 0.11478350501921879 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2760 0.10663159671930121 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 2748 0.1061679810813912 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 3.863463649250044E-5 2 0.0 0.0 0.0 0.0 3.863463649250044E-5 3 0.0 0.0 0.0 0.0 3.863463649250044E-5 4 0.0 0.0 0.0 0.0 3.863463649250044E-5 5 0.0 0.0 0.0 0.0 3.863463649250044E-5 6 0.0 0.0 0.0 0.0 3.863463649250044E-5 7 0.0 0.0 0.0 0.0 3.863463649250044E-5 8 3.863463649250044E-5 0.0 0.0 0.0 3.863463649250044E-5 9 3.863463649250044E-5 0.0 0.0 3.863463649250044E-5 3.863463649250044E-5 10 3.863463649250044E-5 0.0 0.0 1.1590390947750132E-4 7.726927298500088E-5 11 7.726927298500088E-5 0.0 0.0 1.1590390947750132E-4 7.726927298500088E-5 12 7.726927298500088E-5 0.0 0.0 3.090770919400035E-4 7.726927298500088E-5 13 7.726927298500088E-5 0.0 0.0 3.090770919400035E-4 7.726927298500088E-5 14 7.726927298500088E-5 0.0 0.0 4.249810014175048E-4 7.726927298500088E-5 15 1.1590390947750132E-4 0.0 0.0 4.6361563791000527E-4 7.726927298500088E-5 16 1.1590390947750132E-4 0.0 0.0 8.113273663425092E-4 7.726927298500088E-5 17 1.1590390947750132E-4 0.0 0.0 0.0012749430042525145 7.726927298500088E-5 18 1.1590390947750132E-4 0.0 0.0 0.0014681161867150167 7.726927298500088E-5 19 1.1590390947750132E-4 0.0 0.0 0.002549886008505029 7.726927298500088E-5 20 1.1590390947750132E-4 0.0 0.0 0.00440434856014505 7.726927298500088E-5 21 1.1590390947750132E-4 0.0 0.0 0.0088473317567826 7.726927298500088E-5 22 1.1590390947750132E-4 0.0 0.0 0.015569758506477677 7.726927298500088E-5 23 1.1590390947750132E-4 0.0 0.0 0.018969606517817716 7.726927298500088E-5 24 1.1590390947750132E-4 0.0 0.0 0.02472616735520028 7.726927298500088E-5 25 1.1590390947750132E-4 0.0 0.0 0.02913051591534533 1.1590390947750132E-4 26 1.1590390947750132E-4 0.0 0.0 0.03708925103280042 1.1590390947750132E-4 27 1.1590390947750132E-4 0.0 0.0 0.08209860254656343 1.1590390947750132E-4 28 1.1590390947750132E-4 0.0 0.0 0.17416494130819196 1.1590390947750132E-4 29 1.1590390947750132E-4 0.0 0.0 0.29470500716479336 1.1590390947750132E-4 30 1.1590390947750132E-4 0.0 0.0 0.4576659038901602 1.1590390947750132E-4 31 1.1590390947750132E-4 0.0 0.0 0.6490232584375148 1.1590390947750132E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9055 0.0 21.309221 1 ACCGTTA 400 0.0 19.8875 8 CCGTTAT 435 0.0 18.712643 9 GGACCGT 505 0.0 17.217823 6 TGTTACG 260 0.0 17.076923 16 GTATTAG 700 0.0 16.914286 1 GTATTGG 1120 0.0 16.848215 1 CCGTTTA 415 0.0 16.493977 27 ATTAGAC 215 0.0 16.348837 3 TATACCG 125 1.6599552E-7 16.28 5 GACCGTT 480 0.0 16.1875 7 CGTTATT 280 0.0 15.857143 10 ATTAGAG 670 0.0 15.738806 3 TTCGCTA 345 0.0 15.550725 26 CGCCGTT 465 0.0 15.516129 25 TAATACT 700 0.0 15.328572 4 TATGTCG 85 5.3673727E-4 15.235294 5 CGTTTAC 440 0.0 15.136364 28 TCGCTAC 370 0.0 15.0 27 ATTGGAC 1385 0.0 14.693141 3 >>END_MODULE