##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088442_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2360453 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.299236629579152 31.0 31.0 33.0 30.0 34.0 2 31.506483289436392 31.0 31.0 34.0 30.0 34.0 3 31.60097405032 31.0 31.0 34.0 30.0 34.0 4 35.30178275102279 37.0 35.0 37.0 33.0 37.0 5 35.19406402076211 37.0 35.0 37.0 33.0 37.0 6 35.26333843546133 37.0 35.0 37.0 32.0 37.0 7 35.08343906868724 37.0 35.0 37.0 32.0 37.0 8 35.15336632417591 37.0 35.0 37.0 32.0 37.0 9 36.65217693383431 39.0 35.0 39.0 32.0 39.0 10 36.52747332821285 38.0 35.0 39.0 32.0 39.0 11 36.553304810559666 38.0 35.0 39.0 32.0 39.0 12 36.40253036175683 38.0 35.0 39.0 32.0 39.0 13 36.43597055310993 38.0 35.0 39.0 32.0 39.0 14 37.30653438132426 39.0 36.0 41.0 32.0 41.0 15 37.33658708730909 39.0 36.0 41.0 32.0 41.0 16 37.17511342102554 39.0 36.0 40.0 31.0 41.0 17 37.32060159638849 39.0 36.0 40.0 32.0 41.0 18 37.19763282725816 39.0 36.0 40.0 31.0 41.0 19 37.30178148008031 39.0 36.0 40.0 31.0 41.0 20 37.225659650922935 39.0 36.0 40.0 31.0 41.0 21 37.069332454405995 39.0 36.0 40.0 31.0 41.0 22 36.988687340946846 39.0 36.0 40.0 31.0 41.0 23 36.78799832066133 39.0 35.0 40.0 30.0 41.0 24 36.9637264542018 39.0 36.0 40.0 31.0 41.0 25 36.934479525752046 39.0 36.0 40.0 31.0 41.0 26 36.72939728094565 39.0 35.0 40.0 30.0 41.0 27 36.660982023365854 39.0 35.0 40.0 30.0 41.0 28 36.44829149320067 38.0 35.0 40.0 30.0 41.0 29 36.25004522437007 38.0 35.0 40.0 30.0 41.0 30 36.04171148504122 38.0 35.0 40.0 29.0 41.0 31 35.72122554441881 38.0 34.0 40.0 28.0 41.0 32 35.56473693820635 38.0 34.0 40.0 27.0 41.0 33 35.32646953783871 38.0 34.0 40.0 27.0 41.0 34 35.19257066334301 38.0 34.0 40.0 26.0 41.0 35 34.905762156670775 38.0 33.0 40.0 25.0 41.0 36 34.7220702975234 38.0 33.0 40.0 24.0 41.0 37 34.52899295177663 37.0 33.0 40.0 24.0 41.0 38 34.39150239382017 37.0 33.0 40.0 23.0 41.0 39 34.259169744112675 37.0 33.0 40.0 23.0 41.0 40 34.07025049852719 37.0 33.0 40.0 21.0 41.0 41 33.80169950429006 37.0 33.0 40.0 20.0 41.0 42 33.503239420568846 37.0 32.0 40.0 18.0 41.0 43 33.14156392861879 37.0 31.0 40.0 16.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 1.0 13 6.0 14 6.0 15 11.0 16 33.0 17 109.0 18 229.0 19 566.0 20 1198.0 21 2433.0 22 4407.0 23 7470.0 24 12077.0 25 18150.0 26 26476.0 27 36593.0 28 49092.0 29 63378.0 30 78516.0 31 94380.0 32 114619.0 33 138559.0 34 167939.0 35 199535.0 36 250278.0 37 332485.0 38 394591.0 39 367314.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.109417133067254 21.3376415459236 14.384145755073286 22.168795565935863 2 19.28057877026147 24.214843506733665 34.65398379039956 21.850593932605307 3 20.316312165503824 24.73520972457405 33.28708514848633 21.66139296143579 4 13.761849949988413 16.01323983150692 35.72238040748958 34.50252981101509 5 12.320897725987342 39.073474455962476 34.37666414031544 14.22896367773474 6 32.43051227878716 36.71532540575898 12.663840373013146 18.19032194244071 7 25.7414572541796 33.556821508413854 20.598842679773753 20.102878557632796 8 28.16179775661706 33.554237258695686 18.173206583651528 20.11075840103573 9 24.20802278206768 14.382747718340505 22.103299663242606 39.30592983634921 10 17.156494960924874 27.32937279412045 32.26681488680351 23.247317358151168 11 32.68287909142863 22.228868780695908 23.757558400866273 21.33069372700918 12 21.80767844138392 27.48002184326483 30.470846062175355 20.241453653175896 13 32.907835911157726 20.433577792059403 26.477544776362844 20.18104152042002 14 20.551860172602463 23.278158895771277 27.935358170656226 28.234622760970034 15 22.464670976291416 29.4424841333422 26.14129575975459 21.951549130611795 16 21.473505297500097 28.172854956230857 26.94902207330542 23.40461767296362 17 21.924350961446805 26.009753212624865 26.813243051227882 25.25265277470045 18 23.59746201258826 24.376931038237153 30.057747390013695 21.96785955916089 19 22.765757250832785 23.7218025523067 31.616473617564083 21.89596657929643 20 24.199380373174133 23.21257826357907 31.415325787041727 21.172715576205075 21 22.715639752200108 24.30516515262113 32.35116310301455 20.628031992164217 22 20.875103211120916 24.896111043092155 31.738907743556005 22.489878002230927 23 22.34100827256463 25.235156133165965 32.83293503408032 19.59090056018908 24 22.083600054735257 25.139115246098946 29.728192003822997 23.0490926953428 25 21.911810995601268 25.669437180066705 31.024256784608717 21.394495039723306 26 21.842120982709677 26.42581741724999 31.02154544064211 20.710516159398217 27 20.251960111046483 26.65700185515238 30.67534070790649 22.415697325894648 28 21.0395208038457 26.129391265151224 30.52964833445106 22.301439596552015 29 21.370389497270228 26.002508840464095 29.858548337967335 22.768553324298342 30 21.234695204691644 26.409168070705075 32.11807225138564 20.23806447321764 31 22.279537021071803 25.92366804168522 31.802115949777438 19.99467898746554 32 21.889357678377834 25.71963940819834 30.191069256621507 22.19993365680232 33 21.25371697720734 25.9565007225308 30.965623971330924 21.824158328930928 34 20.257848811223948 26.962409334140524 31.612194777866794 21.167547076768738 35 19.688127660241488 29.756491656474417 30.13442758656919 20.42095309671491 36 22.612523951970235 26.372522562406452 30.165353853688252 20.849599631935057 37 21.378820082416382 27.654437516866466 29.850414306067524 21.116328094649628 38 21.134799125422113 25.660752406423683 31.50929080138431 21.695157666769894 39 20.673913015849077 25.403810200838567 32.44241677339053 21.479860009921826 40 19.20360202045963 26.500167552584188 31.694509486102877 22.6017209408533 41 21.287058035046662 25.058368033593553 31.723825892741775 21.930748038618013 42 19.526379046733826 27.59313572437155 31.085177294358328 21.795307934536297 43 19.91316920946954 27.590890392649207 29.904175173155323 22.591765224725933 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 118.0 1 292.5 2 467.0 3 1250.0 4 2033.0 5 2033.0 6 3374.5 7 4716.0 8 5363.0 9 6010.0 10 8985.0 11 11960.0 12 11960.0 13 23351.5 14 34743.0 15 56897.0 16 79051.0 17 71150.5 18 63250.0 19 63250.0 20 65487.0 21 67724.0 22 50331.5 23 32939.0 24 35972.5 25 39006.0 26 39006.0 27 40874.5 28 42743.0 29 45816.5 30 48890.0 31 52751.5 32 56613.0 33 56613.0 34 62074.5 35 67536.0 36 75205.5 37 82875.0 38 88732.0 39 94589.0 40 94589.0 41 98861.0 42 103133.0 43 113681.0 44 124229.0 45 139574.0 46 154919.0 47 154919.0 48 219860.5 49 284802.0 50 266338.5 51 247875.0 52 225637.5 53 203400.0 54 203400.0 55 176711.0 56 150022.0 57 123913.0 58 97804.0 59 85282.0 60 72760.0 61 72760.0 62 64214.5 63 55669.0 64 48279.5 65 40890.0 66 35350.5 67 29811.0 68 29811.0 69 25854.5 70 21898.0 71 18417.5 72 14937.0 73 12341.0 74 9745.0 75 9745.0 76 7953.5 77 6162.0 78 4805.0 79 3448.0 80 2618.0 81 1788.0 82 1788.0 83 1373.0 84 958.0 85 716.5 86 475.0 87 365.0 88 255.0 89 255.0 90 190.0 91 125.0 92 92.5 93 60.0 94 38.0 95 16.0 96 16.0 97 11.5 98 7.0 99 4.5 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2360453.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.265020176431804 #Duplication Level Percentage of deduplicated Percentage of total 1 79.57853007899823 34.42966709478643 2 11.16970328219993 9.66514875738273 3 3.6303592363361448 4.712026968233365 4 1.5701236482189271 2.7172572527873835 5 0.8792730221430077 1.9020882521804696 6 0.5594149232611708 1.452185876513496 7 0.37242354347426737 1.1279038485814683 8 0.2832612693040975 0.9804243625314769 9 0.2128431131096706 0.828779542479401 >10 1.455004316262418 12.406873781508567 >50 0.15777984040123555 4.763534095794928 >100 0.11623990577885089 9.754286038256174 >500 0.007571073068212633 2.2865573131978465 >1k 0.006391165577062612 5.569117721724088 >5k 5.899537455750104E-4 2.007448428883594 >10k+ 4.916281213125087E-4 5.396700665158676 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 40600 1.7200088288137911 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 33675 1.4266329386774488 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 28359 1.2014219304514855 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13947 0.5908611609720676 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 10279 0.43546725988613205 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 9666 0.4094976684560125 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 8835 0.3742925616396514 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 8333 0.35302545740160896 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 7712 0.32671694797566403 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 7131 0.30210302852884596 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 5512 0.23351449912368516 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 4324 0.1831851767436166 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4280 0.181321127766577 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 4279 0.18127876301709883 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 4177 0.17695755857032527 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 3865 0.16373975673313554 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 3626 0.15361458160785238 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 3546 0.1502254016495986 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 3506 0.14853081167047175 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3355 0.14213373449926772 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 3215 0.1362026695723236 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3122 0.1322627478708536 No Hit GTATTGGACCCTCGCATGTGCGTTGCTGCATTTTACTCTTCTC 3053 0.12933958015685973 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 2976 0.12607749444704044 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 2787 0.11807055679566592 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 2749 0.11646069631549537 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 2516 0.10658970968708124 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 4.23647494781722E-5 4 0.0 0.0 0.0 0.0 4.23647494781722E-5 5 0.0 0.0 0.0 0.0 4.23647494781722E-5 6 0.0 0.0 0.0 0.0 4.23647494781722E-5 7 0.0 0.0 0.0 0.0 4.23647494781722E-5 8 0.0 0.0 0.0 0.0 4.23647494781722E-5 9 0.0 0.0 0.0 4.23647494781722E-5 4.23647494781722E-5 10 4.23647494781722E-5 0.0 0.0 1.270942484345166E-4 4.23647494781722E-5 11 8.47294989563444E-5 0.0 0.0 4.23647494781722E-4 8.47294989563444E-5 12 8.47294989563444E-5 0.0 0.0 6.35471242172583E-4 8.47294989563444E-5 13 1.694589979126888E-4 0.0 0.0 8.049302400852718E-4 8.47294989563444E-5 14 2.541884968690332E-4 0.0 0.0 0.0010167539874761328 8.47294989563444E-5 15 2.541884968690332E-4 0.0 0.0 0.0013980367327796825 8.47294989563444E-5 16 2.541884968690332E-4 0.0 0.0 0.0018640489770395767 8.47294989563444E-5 17 2.541884968690332E-4 0.0 0.0 0.002541884968690332 8.47294989563444E-5 18 2.965532463472054E-4 0.0 0.0 0.003219720960341087 8.47294989563444E-5 19 2.965532463472054E-4 0.0 0.0 0.004024651200426358 8.47294989563444E-5 20 2.965532463472054E-4 0.0 0.0 0.007074913162854757 8.47294989563444E-5 21 2.965532463472054E-4 0.0 0.0 0.013514355083536931 8.47294989563444E-5 22 2.965532463472054E-4 4.23647494781722E-5 0.0 0.02135183373699879 8.47294989563444E-5 23 2.965532463472054E-4 4.23647494781722E-5 0.0 0.026901615918639345 8.47294989563444E-5 24 2.965532463472054E-4 4.23647494781722E-5 0.0 0.03584057805853368 8.47294989563444E-5 25 2.965532463472054E-4 4.23647494781722E-5 0.0 0.041856372484434134 8.47294989563444E-5 26 2.965532463472054E-4 4.23647494781722E-5 0.0 0.05337958434249697 8.47294989563444E-5 27 2.965532463472054E-4 4.23647494781722E-5 0.0 0.11192766812133095 8.47294989563444E-5 28 2.965532463472054E-4 4.23647494781722E-5 0.0 0.2287272824326517 8.47294989563444E-5 29 3.389179958253776E-4 4.23647494781722E-5 0.0 0.3844601015144127 8.47294989563444E-5 30 3.389179958253776E-4 4.23647494781722E-5 0.0 0.5984444511286605 8.47294989563444E-5 31 3.8128274530354976E-4 4.23647494781722E-5 0.0 0.8234860003567112 8.47294989563444E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAAACGT 80 2.7288479E-8 23.125 4 GGTATCA 11715 0.0 21.49253 1 GTATTGG 1350 0.0 18.5 1 ATTGGAC 1560 0.0 17.551283 3 GTATTAG 455 0.0 17.483517 1 ACCGTTA 435 0.0 17.011494 8 CGTTCGC 375 0.0 16.773335 23 TAGATGT 520 0.0 16.365385 4 ACGTTTA 125 1.6597733E-7 16.279999 26 TATACTG 240 0.0 16.1875 5 TTGGACC 2040 0.0 15.960784 4 TATTGGA 1610 0.0 15.857143 2 ACGTTCG 305 0.0 15.770493 22 CAGTTCG 365 0.0 15.20548 13 AATACCT 600 0.0 15.108334 34 TCTAACG 135 3.977002E-7 15.074075 2 TATACAG 210 9.094947E-12 14.97619 5 TGGACCC 2160 0.0 14.645834 5 GTCGGGT 370 0.0 14.500001 24 TTCGTTA 345 0.0 14.478261 30 >>END_MODULE