##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088441_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1002315 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.98281478377556 31.0 31.0 33.0 30.0 34.0 2 31.208374612771433 31.0 31.0 34.0 28.0 34.0 3 31.281504317504975 31.0 31.0 34.0 28.0 34.0 4 35.03113392496371 35.0 35.0 37.0 32.0 37.0 5 34.8724642452722 35.0 35.0 37.0 32.0 37.0 6 34.97650040157036 35.0 35.0 37.0 32.0 37.0 7 34.806811231997926 35.0 35.0 37.0 32.0 37.0 8 34.87165910916229 35.0 35.0 37.0 32.0 37.0 9 36.32926774516993 38.0 35.0 39.0 32.0 39.0 10 36.134525573297815 38.0 35.0 39.0 32.0 39.0 11 36.1993824296753 38.0 35.0 39.0 32.0 39.0 12 36.01142654754244 37.0 35.0 39.0 30.0 39.0 13 36.06434404353921 38.0 35.0 39.0 31.0 39.0 14 36.883258257134734 38.0 36.0 40.0 31.0 41.0 15 36.92568005068267 38.0 36.0 40.0 31.0 41.0 16 36.75553294124103 38.0 36.0 40.0 31.0 41.0 17 36.87287230062405 38.0 36.0 40.0 31.0 41.0 18 36.727687403660525 38.0 36.0 40.0 31.0 41.0 19 36.82138449489432 39.0 36.0 40.0 31.0 41.0 20 36.73703376682979 39.0 35.0 40.0 30.0 41.0 21 36.5748911270409 38.0 35.0 40.0 30.0 41.0 22 36.47946004998428 38.0 35.0 40.0 30.0 41.0 23 36.267053770521244 38.0 35.0 40.0 30.0 41.0 24 36.45407581448946 38.0 35.0 40.0 30.0 41.0 25 36.408756728174275 38.0 35.0 40.0 30.0 41.0 26 36.18465452477515 38.0 35.0 40.0 30.0 41.0 27 36.10733651596554 38.0 35.0 40.0 29.0 41.0 28 35.8890418680754 38.0 34.0 40.0 28.0 41.0 29 35.69251283279208 38.0 34.0 40.0 27.0 41.0 30 35.49647466115942 38.0 34.0 40.0 27.0 41.0 31 35.18920399275677 38.0 34.0 40.0 26.0 41.0 32 35.03360320857215 38.0 33.0 40.0 26.0 41.0 33 34.80292123733557 37.0 33.0 40.0 25.0 41.0 34 34.67707656774567 37.0 33.0 40.0 25.0 41.0 35 34.39253528082489 37.0 33.0 40.0 24.0 41.0 36 34.24886886856926 37.0 33.0 40.0 24.0 41.0 37 34.05699904720572 37.0 33.0 40.0 23.0 41.0 38 33.9806348303677 37.0 33.0 40.0 23.0 41.0 39 33.86084314811212 37.0 33.0 40.0 22.0 41.0 40 33.703199094097165 37.0 32.0 40.0 21.0 41.0 41 33.460180681721816 37.0 32.0 40.0 19.0 41.0 42 33.198324877907645 37.0 31.0 40.0 18.0 41.0 43 32.855417708005966 36.0 31.0 40.0 16.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 0.0 12 1.0 13 1.0 14 6.0 15 10.0 16 25.0 17 56.0 18 140.0 19 362.0 20 783.0 21 1433.0 22 2515.0 23 4241.0 24 6570.0 25 9723.0 26 13621.0 27 18452.0 28 24010.0 29 30151.0 30 37365.0 31 44793.0 32 53708.0 33 64419.0 34 75711.0 35 90295.0 36 111158.0 37 140557.0 38 167564.0 39 104644.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.78080743079771 23.150207270169556 14.929039274080505 22.139946024952238 2 20.16431960012571 24.771354314761325 33.66227184068881 21.402054244424157 3 20.919870499792978 25.39740500740785 32.50325496475659 21.17946952804258 4 15.177663708514789 17.393733506931454 35.22904476137741 32.199558023176344 5 12.397799095094856 39.72663284496391 34.41732389518265 13.458244164758584 6 32.38393119927368 37.78323181834054 13.155245606421134 16.677591375964642 7 25.650618817437632 33.44238088824372 21.307373430508374 19.59962686381028 8 27.390790320408254 34.789861470695335 18.560532367569078 19.25881584132733 9 24.46925367773604 14.595112314990796 21.6548689783152 39.280765028957966 10 16.784942857285383 28.160707961070123 32.930665509345864 22.12368367229863 11 33.386809535924336 22.708429984585685 23.183230820650195 20.721529658839785 12 21.01036101425201 27.906496460693496 30.666806343315223 20.416336181739272 13 32.05269800412046 20.918972578480815 26.252026558517034 20.77630285888169 14 20.309982390765377 23.211066381327228 27.936427171098906 28.54252405680849 15 22.693165322278926 30.003042955557884 25.453674742970023 21.850116979193167 16 21.575851902844914 28.461511600644506 26.77701121902795 23.18562527748263 17 22.018028264567526 26.90890588288113 27.199732618987042 23.8733332335643 18 22.98608720811322 25.56022807201329 29.57483425869113 21.878850461182363 19 22.827354673929854 24.79330350239196 30.87223078573103 21.50711103794715 20 23.479544853663768 24.677571422157705 30.69653751565127 21.14634620852726 21 22.641285424242877 25.40508722307857 31.26951108184553 20.684116270833023 22 21.18346028942997 25.97167557105301 30.737841896010735 22.107022243506282 23 22.265954315759018 26.182587310376476 31.601741967345593 19.94971640651891 24 22.261863785336942 26.140684315808905 29.104423260152746 22.493028638701407 25 22.14004579398692 26.265495378199468 30.15329512179305 21.441163706020564 26 21.96914143757202 27.13009383277712 30.231114968847116 20.66964976080374 27 21.013354085292548 27.045090615225753 29.804801883639374 22.136753415842325 28 21.38878496281109 26.7297206965874 30.138728842729083 21.742765497872426 29 21.831160862603074 26.450068092366173 29.434758533993804 22.28401251103695 30 21.687792759761155 26.63074981418017 31.016995655058537 20.664461771000134 31 22.254480876770277 26.410060709457607 30.80538553249228 20.530072881279835 32 21.768206601717026 26.21251802078189 29.796221746656492 22.223053630844593 33 21.555099943630495 26.377236697046335 30.289080777998933 21.778582581324237 34 20.9915046666966 26.981338202062226 30.777450202780564 21.24970692846061 35 20.51061791951632 28.986396492120743 29.73685917101909 20.76612641734385 36 22.72299626364965 26.453360470510766 29.7146106762844 21.10903258955518 37 21.50581404049625 27.257897966208226 29.64367489262358 21.592613100671944 38 21.45363483535615 25.624180023246186 31.067977631782423 21.85420750961524 39 20.847039104473144 25.701101948988093 31.696622319330746 21.755236627208014 40 19.92637045240269 26.523498101894116 31.120057067887842 22.430074377815355 41 21.194035807106548 25.38982256077181 31.209450122965336 22.206691509156304 42 20.009478058295045 27.366346906910504 30.6565301327427 21.96764490205175 43 20.319061372921688 27.131989444436126 29.841516888403348 22.70743229423884 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 66.0 1 128.5 2 191.0 3 352.5 4 514.0 5 514.0 6 948.0 7 1382.0 8 1633.5 9 1885.0 10 3041.5 11 4198.0 12 4198.0 13 8278.0 14 12358.0 15 20520.5 16 28683.0 17 25415.5 18 22148.0 19 22148.0 20 23820.0 21 25492.0 22 19914.5 23 14337.0 24 15645.5 25 16954.0 26 16954.0 27 18597.0 28 20240.0 29 22251.0 30 24262.0 31 26730.0 32 29198.0 33 29198.0 34 32702.0 35 36206.0 36 39694.5 37 43183.0 38 46161.0 39 49139.0 40 49139.0 41 51462.5 42 53786.0 43 56975.0 44 60164.0 45 64179.5 46 68195.0 47 68195.0 48 87206.5 49 106218.0 50 99984.5 51 93751.0 52 85728.5 53 77706.0 54 77706.0 55 68598.0 56 59490.0 57 50407.0 58 41324.0 59 36236.5 60 31149.0 61 31149.0 62 27627.0 63 24105.0 64 20903.5 65 17702.0 66 15222.0 67 12742.0 68 12742.0 69 10903.5 70 9065.0 71 7794.0 72 6523.0 73 5379.5 74 4236.0 75 4236.0 76 3422.0 77 2608.0 78 2024.0 79 1440.0 80 1143.0 81 846.0 82 846.0 83 625.0 84 404.0 85 303.0 86 202.0 87 153.5 88 105.0 89 105.0 90 84.5 91 64.0 92 46.5 93 29.0 94 23.5 95 18.0 96 18.0 97 10.5 98 3.0 99 3.5 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1002315.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 55.7215572839146 #Duplication Level Percentage of deduplicated Percentage of total 1 85.0018558566193 47.36435780353664 2 8.448278223459583 9.415024379579028 3 2.433575268894105 4.068078112512024 4 1.0924164209201768 2.4348457670477037 5 0.6400253329627975 1.7831604126921519 6 0.42262098534366693 1.4129459666526945 7 0.29185094713680976 1.1383672488473935 8 0.23343199913423343 1.0405755609325515 9 0.16979122078796322 0.8514928111898055 >10 1.091508851859562 11.35189262877593 >50 0.10587105330302504 4.113380704831904 >100 0.06031213690469707 6.42212079488681 >500 0.004680941904762912 1.7104387695908214 >1k 0.003240652087912785 3.4071338376312656 >5k 1.8003622710626585E-4 0.8701669142188145 >10k+ 3.600724542125317E-4 2.6160182870744784 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 14379 1.434578949731372 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 11698 1.1670981677416778 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 8674 0.8653966068551304 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4887 0.48757127250415283 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 3053 0.3045948628924041 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 2959 0.29521657363204185 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 2876 0.28693574375321135 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 2655 0.26488678708789154 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 2503 0.2497218938158164 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 2026 0.20213206427121214 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1609 0.1605283768076902 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 1429 0.1425699505644433 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1215 0.12121937714191647 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 1166 0.11633069444236593 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 1137 0.11343739243650948 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 1108 0.11054409043065304 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1100 0.10974593815317539 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 1099 0.1096461691184907 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 1068 0.10655332904326484 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 1054 0.10515656255767898 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 1019 0.1016646463437143 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 3.9907613873881964E-4 0.0 10 9.976903468470491E-5 0.0 0.0 3.9907613873881964E-4 0.0 11 9.976903468470491E-5 0.0 0.0 4.988451734235245E-4 0.0 12 9.976903468470491E-5 0.0 0.0 7.981522774776393E-4 0.0 13 2.9930710405411473E-4 0.0 0.0 8.979213121623441E-4 0.0 14 2.9930710405411473E-4 0.0 0.0 8.979213121623441E-4 0.0 15 2.9930710405411473E-4 0.0 0.0 0.001197228416216459 0.0 16 2.9930710405411473E-4 0.0 0.0 0.0017958426243246883 0.0 17 2.9930710405411473E-4 0.0 0.0 0.003092840075225852 0.0 18 3.9907613873881964E-4 0.0 0.0 0.003491916213964672 0.0 19 3.9907613873881964E-4 0.0 0.0 0.004489606560811721 0.0 20 3.9907613873881964E-4 0.0 0.0 0.007083601462614049 0.0 21 3.9907613873881964E-4 0.0 0.0 0.014167202925228098 0.0 22 3.9907613873881964E-4 0.0 0.0 0.024044337359013884 0.0 23 3.9907613873881964E-4 0.0 0.0 0.030130248474780883 0.0 24 3.9907613873881964E-4 0.0 0.0 0.040306690012620786 0.0 25 3.9907613873881964E-4 0.0 0.0 0.047889136648658355 0.0 26 3.9907613873881964E-4 0.0 0.0 0.05766650204775944 0.0 27 3.9907613873881964E-4 0.0 0.0 0.09897088240722726 0.0 28 3.9907613873881964E-4 0.0 0.0 0.19435007956580516 0.0 29 3.9907613873881964E-4 0.0 0.0 0.31227707856312636 0.0 30 3.9907613873881964E-4 0.0 0.0 0.4992442495622634 0.0 31 3.9907613873881964E-4 0.0 0.0 0.7463721484762774 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCGTCT 35 8.868601E-4 26.42857 13 GGTATCA 3905 0.0 22.834827 1 CTAGTGC 45 0.0038254722 20.555555 3 TTACGCA 45 0.0038254722 20.555555 10 TAGACTA 85 2.7225522E-5 17.411764 5 TAGCTCG 65 0.001579743 17.076923 27 TAGACAG 125 1.656972E-7 16.279999 5 GTATTGG 445 0.0 16.213482 1 GTATAAT 140 3.4709956E-8 15.857142 1 TCCTATA 95 7.058233E-5 15.578948 2 TTCGTTA 85 5.3633E-4 15.235294 30 TATTAAG 85 5.3633E-4 15.235294 2 ATACCGT 85 5.3633E-4 15.235294 6 CATACCC 110 1.4514208E-5 15.136364 3 GTATCAA 5895 0.0 15.094996 2 ACCGTTA 135 3.9703627E-7 15.074073 8 TTGGACC 655 0.0 14.969466 4 TCTATCG 75 0.004103918 14.8 29 TCTATAC 75 0.004103918 14.8 3 CCTTAAC 125 2.9576458E-6 14.799999 2 >>END_MODULE