##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088440_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3915502 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.352790778806906 31.0 31.0 34.0 30.0 34.0 2 31.572936241636448 31.0 31.0 34.0 30.0 34.0 3 31.686029786218985 31.0 31.0 34.0 30.0 34.0 4 35.39066868054211 37.0 35.0 37.0 33.0 37.0 5 35.256808450104224 37.0 35.0 37.0 33.0 37.0 6 35.314199303180025 37.0 35.0 37.0 33.0 37.0 7 35.15952616037484 37.0 35.0 37.0 32.0 37.0 8 35.19492315417027 37.0 35.0 37.0 32.0 37.0 9 36.738142899684384 39.0 35.0 39.0 32.0 39.0 10 36.583195207153516 39.0 35.0 39.0 32.0 39.0 11 36.62034804221783 39.0 35.0 39.0 32.0 39.0 12 36.47538706403419 38.0 35.0 39.0 32.0 39.0 13 36.49652662672628 38.0 35.0 39.0 32.0 39.0 14 37.4625769569266 39.0 36.0 41.0 32.0 41.0 15 37.48037493021329 39.0 36.0 41.0 32.0 41.0 16 37.348597957554354 39.0 36.0 41.0 32.0 41.0 17 37.41305993458821 39.0 36.0 41.0 32.0 41.0 18 37.27888148186363 39.0 36.0 40.0 32.0 41.0 19 37.36389791143 39.0 36.0 41.0 32.0 41.0 20 37.26757769501842 39.0 36.0 40.0 31.0 41.0 21 37.113354813763344 39.0 36.0 40.0 31.0 41.0 22 37.025080819777386 39.0 36.0 40.0 31.0 41.0 23 36.83824347427227 39.0 36.0 40.0 30.0 41.0 24 37.030999601072864 39.0 36.0 40.0 31.0 41.0 25 37.011785206596755 39.0 36.0 40.0 31.0 41.0 26 36.83324845703054 39.0 36.0 40.0 30.0 41.0 27 36.77162264251174 39.0 35.0 40.0 30.0 41.0 28 36.589935849860375 39.0 35.0 40.0 30.0 41.0 29 36.430417095943255 39.0 35.0 40.0 30.0 41.0 30 36.260489970379275 38.0 35.0 40.0 30.0 41.0 31 36.015407475210075 38.0 35.0 40.0 29.0 41.0 32 35.872604330172734 38.0 35.0 40.0 29.0 41.0 33 35.6676275481407 38.0 34.0 40.0 27.0 41.0 34 35.55827886181644 38.0 34.0 40.0 27.0 41.0 35 35.331137105791285 38.0 34.0 40.0 26.0 41.0 36 35.19237584350615 38.0 34.0 40.0 25.0 41.0 37 35.0332647001585 38.0 33.0 40.0 25.0 41.0 38 34.9771620599351 38.0 33.0 40.0 25.0 41.0 39 34.89351888978731 38.0 33.0 40.0 24.0 41.0 40 34.785022201495494 38.0 33.0 40.0 24.0 41.0 41 34.593875574575115 38.0 33.0 40.0 23.0 41.0 42 34.38330563999201 38.0 33.0 40.0 23.0 41.0 43 34.065285626210894 38.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 1.0 13 2.0 14 17.0 15 23.0 16 44.0 17 137.0 18 330.0 19 836.0 20 1824.0 21 3457.0 22 6466.0 23 11326.0 24 17544.0 25 26819.0 26 38420.0 27 53894.0 28 72727.0 29 94437.0 30 119435.0 31 147120.0 32 179037.0 33 218594.0 34 266934.0 35 322875.0 36 407836.0 37 536424.0 38 699378.0 39 689563.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.50377141934802 21.256176091852335 13.460828266720334 23.779224222079314 2 19.08741203554487 23.257707440833897 34.95554337604731 22.699337147573925 3 19.698649113191617 24.918235260766053 32.0905467549244 23.29256887111793 4 13.885243833357766 16.334968032196127 36.29749135615305 33.482296778293055 5 12.715329988338661 38.436961595218186 35.11419480822638 13.733513608216775 6 32.66942527420495 37.249323330699355 13.763113899571497 16.3181374955242 7 26.608567688127856 32.42284131128014 21.64634317643051 19.3222478241615 8 27.01954947283899 34.47491534929621 18.985483853666786 19.520051324198022 9 24.755599665125953 14.37473406985873 21.365255336352785 39.50441092866253 10 16.292138274990027 27.381086767418328 33.747499043545375 22.57927591404627 11 33.55855775325871 22.295302109410237 23.467233575669226 20.678906561661826 12 21.148424901838897 26.768547174793934 31.006573358920512 21.076454564446653 13 31.327451754589834 20.748297408608142 26.165814753765925 21.758436083036095 14 20.778076476528426 22.50201889821535 27.405834551993593 29.314070073262638 15 23.008646145500627 29.183154548254603 25.20195367030843 22.606245635936336 16 22.38517564286776 28.10896278433774 26.153070538592498 23.352791034202 17 22.11427806702691 26.551052713036537 26.767091422760096 24.567577797176455 18 23.23500281700788 25.49800766287439 28.94009503762225 22.326894482495476 19 23.076428003356913 24.713638251238283 29.930312894745043 22.27962085065976 20 23.839906096331966 24.49568407831231 29.86028356006458 21.804126265291142 21 22.875176669556037 25.276222563543577 30.27272109680955 21.575879670090835 22 21.85931714503019 25.56083485591375 29.8639867889226 22.715861210133465 23 22.748653940158885 25.810355862415594 30.561394171168853 20.879596026256657 24 22.700205490892355 25.889196327827186 28.272466723296276 23.138131457984187 25 22.695046510000505 25.960783572578944 29.350080781468122 21.99408913595243 26 22.525872799962816 26.447004751881114 29.34285310031766 21.684269347838413 27 21.58916021496094 26.60310223312362 29.00700855216011 22.800728999755332 28 21.980706433044855 26.135141803017852 29.223660210108438 22.66049155382886 29 22.35672462943449 26.100663465374303 28.720659573153075 22.82195233203814 30 22.220215951875392 26.310547153340746 30.050782760422546 21.418454134361316 31 22.872801495185037 26.035486637473305 29.850987178655508 21.24072468868615 32 22.398430648228505 25.88281145048579 29.05525268535171 22.663505215934 33 22.131823709961076 26.023917239730693 29.538383584020643 22.305875466287592 34 21.583567062409877 26.43515441953548 29.968826474868354 22.01245204318629 35 21.18956905142687 28.299078892055217 28.91866738926452 21.592684667253394 36 23.131261329964843 26.170207549376812 28.922370618122528 21.77616050253582 37 22.131083064189472 26.78203203573897 28.830121910294004 22.256762989777556 38 22.021569648029807 25.603383678516828 29.981979322191638 22.393067351261728 39 21.610025994112632 25.401008606303865 30.610225713075874 22.378739686507632 40 20.64966382343822 26.116778895783987 30.255405309459682 22.97815197131811 41 22.013907795220128 25.011377851422374 30.28490344277694 22.68981091058056 42 20.65088971988777 26.799705376219958 29.837655554766666 22.711749349125604 43 21.18108993431749 26.415591155361433 29.190407768914433 23.212911141406643 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 246.0 1 424.5 2 603.0 3 1479.5 4 2356.0 5 2356.0 6 3871.5 7 5387.0 8 6009.5 9 6632.0 10 10037.0 11 13442.0 12 13442.0 13 25145.0 14 36848.0 15 59035.0 16 81222.0 17 75104.0 18 68986.0 19 68986.0 20 74387.5 21 79789.0 22 64632.0 23 49475.0 24 56049.5 25 62624.0 26 62624.0 27 70198.5 28 77773.0 29 86754.5 30 95736.0 31 106933.5 32 118131.0 33 118131.0 34 132356.0 35 146581.0 36 160695.0 37 174809.0 38 186962.5 39 199116.0 40 199116.0 41 206326.0 42 213536.0 43 226295.5 44 239055.0 45 251628.0 46 264201.0 47 264201.0 48 329926.5 49 395652.0 50 375851.5 51 356051.0 52 329917.0 53 303783.0 54 303783.0 55 273750.0 56 243717.0 57 209223.0 58 174729.0 59 156615.5 60 138502.0 61 138502.0 62 123319.0 63 108136.0 64 94919.5 65 81703.0 66 70410.0 67 59117.0 68 59117.0 69 50893.0 70 42669.0 71 36270.0 72 29871.0 73 24582.5 74 19294.0 75 19294.0 76 15339.0 77 11384.0 78 9063.0 79 6742.0 80 5264.5 81 3787.0 82 3787.0 83 2860.0 84 1933.0 85 1451.0 86 969.0 87 736.0 88 503.0 89 503.0 90 390.5 91 278.0 92 179.5 93 81.0 94 61.0 95 41.0 96 41.0 97 24.0 98 7.0 99 6.0 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3915502.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 48.85984367486918 #Duplication Level Percentage of deduplicated Percentage of total 1 78.56611780930814 38.38728234304152 2 12.081234542525971 11.805744622944973 3 3.9867496221538867 5.843758899278481 4 1.7257159242524047 3.3727284114481955 5 0.9251817929989671 2.2602118888382363 6 0.533196097948483 1.5631126796287875 7 0.36152549305682347 1.236485535266548 8 0.24532182486100046 0.9589108810193696 9 0.2041355704658876 0.897662885529916 >10 1.1542196972850824 10.86461784949438 >50 0.12579544881101554 4.2766090035905595 >100 0.07871644434123858 7.51052138091364 >500 0.007274773806891709 2.443794707582056 >1k 0.004239256662238764 3.997853479153066 >5k 3.1401901201768623E-4 1.2325734651954519 >10k+ 2.616825100147385E-4 3.3481319670747682 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 40308 1.029446543508342 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 35690 0.9115050892580313 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 28782 0.7350781585605115 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14639 0.3738728776029229 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 11513 0.29403637132607774 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 9960 0.254373513281311 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 8936 0.22822105569094334 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 8299 0.21195238822506027 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 7986 0.20395852179362953 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 7140 0.18235209687033743 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 5880 0.15017231506968964 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 4503 0.11500441067326744 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4396 0.11227168317114894 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 4372 0.11165873494637468 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 4306 0.10997312732824553 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 4032 0.10297530176207291 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 2.553950936559348E-5 0.0 0.0 0.0 0.0 7 2.553950936559348E-5 0.0 0.0 2.553950936559348E-5 0.0 8 2.553950936559348E-5 0.0 0.0 2.553950936559348E-5 0.0 9 2.553950936559348E-5 0.0 0.0 1.5323705619356087E-4 0.0 10 2.553950936559348E-5 0.0 0.0 2.0431607492474784E-4 0.0 11 1.0215803746237392E-4 0.0 0.0 3.5755313111830874E-4 0.0 12 1.0215803746237392E-4 0.0 0.0 4.086321498494957E-4 0.0 13 1.0215803746237392E-4 0.0 0.0 4.5971116858068263E-4 0.0 14 1.276975468279674E-4 0.0 0.0 5.874087154086501E-4 0.0 15 1.276975468279674E-4 0.0 0.0 8.172642996989914E-4 0.0 16 1.276975468279674E-4 0.0 0.0 0.001225896449548487 0.0 17 1.276975468279674E-4 0.0 0.0 0.0020942397679786654 0.0 18 1.276975468279674E-4 0.0 0.0 0.0024773324084625676 0.0 19 1.5323705619356087E-4 0.0 0.0 0.0034222942549895262 0.0 20 1.5323705619356087E-4 0.0 0.0 0.006027324210280061 0.0 21 1.7877656555915437E-4 0.0 0.0 0.010317961783699765 0.0 22 1.7877656555915437E-4 0.0 0.0 0.016983773728119662 0.0 23 1.7877656555915437E-4 0.0 0.0 0.02112117424534581 0.0 24 2.8093460302152826E-4 0.0 0.0 0.027174037964991463 0.0 25 2.8093460302152826E-4 0.0 0.0 0.03177114965079829 0.0 26 2.8093460302152826E-4 0.0 0.0 0.03889667276379887 0.0 27 2.8093460302152826E-4 0.0 0.0 0.079095860505243 0.0 28 2.8093460302152826E-4 0.0 0.0 0.1657514157827017 0.0 29 2.8093460302152826E-4 0.0 0.0 0.27115297093450597 0.0 30 3.0647411238712174E-4 0.0 0.0 0.41506810620962525 0.0 31 3.830926404839022E-4 0.0 0.0 0.5996421403947693 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11560 0.0 23.669119 1 GTATTGG 1780 0.0 16.421349 1 TAATACT 955 0.0 15.884816 4 GTATTAG 940 0.0 15.744681 1 GTATCAA 17415 0.0 15.658341 2 TTGGACC 2550 0.0 14.72745 4 ATTGGAC 2195 0.0 14.496584 3 TTAACGG 555 0.0 14.333333 35 TATACTG 540 0.0 14.046297 5 TGGACCC 2640 0.0 13.875 5 ATAATAC 480 0.0 13.874999 3 ACCGTTA 470 0.0 13.776596 8 GGACCCT 2570 0.0 13.605059 6 GGACCGT 630 0.0 13.507937 6 CTAATAC 865 0.0 13.4739895 3 TCTATAC 400 0.0 13.4125 3 TTCGTTA 255 1.6370905E-11 13.058825 30 ATTAGAG 865 0.0 13.046244 3 TACTGGT 995 0.0 13.015076 7 CCGTTTA 485 0.0 12.969072 27 >>END_MODULE