##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088439_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3961311 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.25733349388624 31.0 31.0 33.0 30.0 34.0 2 31.48578488283298 31.0 31.0 34.0 30.0 34.0 3 31.59817090857042 31.0 31.0 34.0 30.0 34.0 4 35.32562224980568 37.0 35.0 37.0 33.0 37.0 5 35.17406989756674 37.0 35.0 37.0 32.0 37.0 6 35.229105970220466 37.0 35.0 37.0 32.0 37.0 7 35.08098379551618 37.0 35.0 37.0 32.0 37.0 8 35.110000704312284 37.0 35.0 37.0 32.0 37.0 9 36.645933126684575 39.0 35.0 39.0 32.0 39.0 10 36.46872588393085 38.0 35.0 39.0 32.0 39.0 11 36.507953048877 38.0 35.0 39.0 32.0 39.0 12 36.36284704735377 38.0 35.0 39.0 32.0 39.0 13 36.38336474970029 38.0 35.0 39.0 32.0 39.0 14 37.356414328488725 39.0 36.0 41.0 32.0 41.0 15 37.36632241194897 39.0 36.0 41.0 32.0 41.0 16 37.2276970932098 39.0 36.0 40.0 32.0 41.0 17 37.275803389332474 39.0 36.0 40.0 32.0 41.0 18 37.14068675749014 39.0 36.0 40.0 31.0 41.0 19 37.228348645183374 39.0 36.0 40.0 31.0 41.0 20 37.12716295186114 39.0 36.0 40.0 31.0 41.0 21 36.96652951510245 39.0 36.0 40.0 31.0 41.0 22 36.88054005353278 39.0 36.0 40.0 31.0 41.0 23 36.69895875380651 39.0 35.0 40.0 30.0 41.0 24 36.901813818708 39.0 36.0 40.0 31.0 41.0 25 36.8657111244232 39.0 36.0 40.0 30.0 41.0 26 36.697761927806226 39.0 35.0 40.0 30.0 41.0 27 36.63749248670453 39.0 35.0 40.0 30.0 41.0 28 36.46080375915953 39.0 35.0 40.0 30.0 41.0 29 36.30397032699528 38.0 35.0 40.0 30.0 41.0 30 36.153088207414164 38.0 35.0 40.0 29.0 41.0 31 35.93006179014978 38.0 35.0 40.0 29.0 41.0 32 35.79396366505937 38.0 34.0 40.0 28.0 41.0 33 35.6158577299283 38.0 34.0 40.0 27.0 41.0 34 35.518311993176 38.0 34.0 40.0 27.0 41.0 35 35.298690761720046 38.0 34.0 40.0 26.0 41.0 36 35.17830915068269 38.0 34.0 40.0 25.0 41.0 37 35.031214666053735 38.0 33.0 40.0 25.0 41.0 38 34.99521951192421 38.0 33.0 40.0 25.0 41.0 39 34.943563128469336 38.0 33.0 40.0 25.0 41.0 40 34.85571771567544 38.0 33.0 40.0 24.0 41.0 41 34.685665427430465 38.0 33.0 40.0 24.0 41.0 42 34.50566239308148 38.0 33.0 40.0 23.0 41.0 43 34.19074518511675 38.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 0.0 11 1.0 12 2.0 13 3.0 14 7.0 15 30.0 16 61.0 17 149.0 18 341.0 19 868.0 20 2000.0 21 3678.0 22 6783.0 23 11671.0 24 18543.0 25 27663.0 26 40232.0 27 55978.0 28 75288.0 29 98634.0 30 124293.0 31 152231.0 32 186420.0 33 226670.0 34 273445.0 35 332475.0 36 414740.0 37 539995.0 38 718448.0 39 650661.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.6476037857164 21.890278243743044 13.385391856382899 24.076726114157662 2 19.244007854975283 23.203782788071926 34.790401460526574 22.76180789642621 3 19.350462511022233 25.295287343003363 32.03689384650688 23.317356299467527 4 13.963559033865302 16.791385478191437 36.97912130605246 32.26593418189079 5 12.513458297013285 38.65422331142392 35.58208381013255 13.25023458143024 6 32.256038468072816 38.31090262794312 14.038079817514959 15.394979086469101 7 26.55156335869615 32.433959363453155 22.15683141263082 18.857645865219872 8 26.602329380349083 34.978041360549575 19.11397514610693 19.30565411299441 9 24.842205017480325 14.246874330240669 21.190812839486725 39.720107812792286 10 16.133270020960232 27.456844463865625 34.22207950852634 22.1878060066478 11 33.883201798596474 22.472383511418315 23.30190686871089 20.34250782127432 12 20.906311067219917 27.096080060363853 30.77968379660168 21.21792507581455 13 30.37363135588193 21.179705405609404 25.996216908998054 22.45044632951061 14 20.74063359327253 22.307690560019143 27.307550454887284 29.644125391821042 15 23.17780653929974 29.427606163717012 24.95317837958191 22.441408917401333 16 22.588102777085666 28.207075889774874 25.983468604207044 23.221352728932416 17 22.104777938414834 26.91714939826739 26.866560085789782 24.111512577527996 18 22.670954136143312 26.279860379556162 28.804277169856142 22.244908314444384 19 23.106390788302157 25.25966782209223 29.467491949003747 22.166449440601863 20 23.510953823115628 25.175276568792505 29.523130095061962 21.7906395130299 21 22.776777687992688 25.902788243589054 29.646473099436022 21.67396096898224 22 21.911407612277856 26.33532181643905 29.1548429295251 22.598427641757993 23 22.56581217682732 26.365463352915235 30.06093184806747 21.007792622189978 24 22.747696406568434 26.630476627560927 27.658797807089623 22.96302915878102 25 22.676204923067136 26.29215428932492 28.922975247336048 22.108665540271893 26 22.405234024796336 27.04655100293817 28.900659402909795 21.6475555693557 27 21.829717484943746 27.02718872615657 28.31188967490813 22.831204113991554 28 21.871117920304666 26.643755059877904 28.9789920559128 22.506134963904625 29 22.740426086212366 26.579811582579605 28.336603715285168 22.34315861592286 30 22.359769278403032 26.54911467440956 29.472187364233708 21.6189286829537 31 22.5984781300938 26.538310170547074 29.493594418615455 21.36961728074367 32 22.062948352199562 26.233007203928192 28.84635919775044 22.8576852461218 33 21.91221542565075 26.386012105588275 29.360279967919713 22.341492500841262 34 21.79664762499082 26.65486249375522 29.657731998320756 21.8907578829332 35 21.432828677172786 28.238151460463467 28.561125344614446 21.7678945177493 36 23.19732028108876 26.506149100638655 28.41708212255993 21.879448495712655 37 22.097962013081023 26.727187034797318 28.594018495392053 22.580832456729603 38 22.0161456649074 25.77896560002484 29.712814772685103 22.492073962382655 39 21.553344334741706 25.886480511123715 30.161504612993024 22.39867054114156 40 20.81558352777654 26.523845262338657 29.957758933847913 22.702812276036898 41 21.7771338832018 25.188832686956413 30.13297870326263 22.901054726579158 42 20.65023422801189 26.89624722724371 29.74792941023818 22.705589134506226 43 21.195937405571033 26.151216099922475 29.2507707675565 23.40207572694999 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 217.0 1 407.0 2 597.0 3 1234.5 4 1872.0 5 1872.0 6 3166.0 7 4460.0 8 5078.0 9 5696.0 10 8489.5 11 11283.0 12 11283.0 13 21610.5 14 31938.0 15 50078.5 16 68219.0 17 63524.0 18 58829.0 19 58829.0 20 64406.0 21 69983.0 22 58606.0 23 47229.0 24 53988.5 25 60748.0 26 60748.0 27 69668.5 28 78589.0 29 89247.5 30 99906.0 31 115856.0 32 131806.0 33 131806.0 34 151715.5 35 171625.0 36 188752.0 37 205879.0 38 219002.0 39 232125.0 40 232125.0 41 238653.0 42 245181.0 43 259132.0 44 273083.0 45 273403.5 46 273724.0 47 273724.0 48 319400.5 49 365077.0 50 350208.5 51 335340.0 52 311585.5 53 287831.0 54 287831.0 55 261305.5 56 234780.0 57 202348.0 58 169916.0 59 153787.0 60 137658.0 61 137658.0 62 122918.5 63 108179.0 64 94440.5 65 80702.0 66 69086.0 67 57470.0 68 57470.0 69 49386.0 70 41302.0 71 34591.0 72 27880.0 73 22892.5 74 17905.0 75 17905.0 76 14379.5 77 10854.0 78 8483.5 79 6113.0 80 4797.5 81 3482.0 82 3482.0 83 2647.5 84 1813.0 85 1433.5 86 1054.0 87 765.0 88 476.0 89 476.0 90 383.5 91 291.0 92 210.0 93 129.0 94 89.5 95 50.0 96 50.0 97 33.5 98 17.0 99 10.0 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3961311.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.68014667281655 #Duplication Level Percentage of deduplicated Percentage of total 1 78.73444704046399 36.753355360519656 2 11.887145852034786 11.097874237882932 3 3.915751044665019 5.48363499297593 4 1.6959677593476001 3.1667209503485596 5 0.8978239089269621 2.0955275877536037 6 0.5574338549094423 1.5612656464539785 7 0.37297659522161686 1.218742151933096 8 0.2570881832257272 0.9600731280659903 9 0.19698252824789506 0.8275655979534571 >10 1.2379684979150725 11.005640338211357 >50 0.13238186620835093 4.291245327492564 >100 0.09458949232861832 8.540886122542924 >500 0.012057065886250598 3.9103703208771137 >1k 0.006843199543981453 5.5521224579579 >5k 3.2586664495149777E-4 1.0396301576436189 >10k+ 2.172444299676652E-4 2.495345621387344 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 33388 0.842852277945357 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 29172 0.7364228660663098 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 23422 0.5912689006240611 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12444 0.31413842538492937 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 8042 0.2030135982759243 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 7666 0.19352179114439638 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 6923 0.17476537439246753 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 6917 0.17461390938504953 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 6059 0.15295441332427573 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 5400 0.13631850667619885 No Hit CTCTAATACTGGTGATGCTAGAGGTGATGTTTTTGGTAAACAG 4648 0.11733489241314303 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 4257 0.1074644227630701 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 2.524416790299979E-5 0.0 3 0.0 0.0 0.0 2.524416790299979E-5 0.0 4 0.0 0.0 0.0 2.524416790299979E-5 0.0 5 0.0 0.0 0.0 2.524416790299979E-5 0.0 6 2.524416790299979E-5 0.0 0.0 2.524416790299979E-5 0.0 7 2.524416790299979E-5 0.0 0.0 2.524416790299979E-5 0.0 8 2.524416790299979E-5 0.0 0.0 2.524416790299979E-5 0.0 9 2.524416790299979E-5 0.0 0.0 2.5244167902999787E-4 0.0 10 2.524416790299979E-5 0.0 0.0 3.7866251854499686E-4 0.0 11 2.524416790299979E-5 0.0 0.0 4.291508543509964E-4 0.0 12 2.524416790299979E-5 0.0 0.0 6.05860029671995E-4 0.0 13 2.524416790299979E-5 0.0 0.0 6.563483654779945E-4 0.0 14 1.0097667161199916E-4 0.0 0.0 7.320808691869939E-4 0.0 15 1.0097667161199916E-4 0.0 0.0 8.835458766049926E-4 2.524416790299979E-5 16 1.0097667161199916E-4 0.0 0.0 0.0011107433877319908 2.524416790299979E-5 17 1.0097667161199916E-4 0.0 0.0 0.0015903825778889867 2.524416790299979E-5 18 1.0097667161199916E-4 0.0 0.0 0.0018175800890159848 2.524416790299979E-5 19 1.2622083951499894E-4 0.0 2.524416790299979E-5 0.00239819595078498 2.524416790299979E-5 20 1.2622083951499894E-4 0.0 2.524416790299979E-5 0.0036604043459349694 2.524416790299979E-5 21 1.2622083951499894E-4 0.0 2.524416790299979E-5 0.006613971990585945 5.048833580599958E-5 22 1.2622083951499894E-4 0.0 2.524416790299979E-5 0.010249132168617914 5.048833580599958E-5 23 1.5146500741799874E-4 0.0 2.524416790299979E-5 0.012899769798432893 5.048833580599958E-5 24 1.7670917532099851E-4 0.0 2.524416790299979E-5 0.016913592495009858 5.048833580599958E-5 25 1.7670917532099851E-4 0.0 2.524416790299979E-5 0.020296310994011833 5.048833580599958E-5 26 2.0195334322399832E-4 0.0 2.524416790299979E-5 0.026001492940089785 5.048833580599958E-5 27 2.0195334322399832E-4 0.0 2.524416790299979E-5 0.06146954884380449 5.048833580599958E-5 28 2.0195334322399832E-4 0.0 2.524416790299979E-5 0.13525825162427288 5.048833580599958E-5 29 2.0195334322399832E-4 0.0 2.524416790299979E-5 0.22384003679589914 5.048833580599958E-5 30 2.0195334322399832E-4 0.0 2.524416790299979E-5 0.34629949529335113 5.048833580599958E-5 31 2.0195334322399832E-4 0.0 2.524416790299979E-5 0.5103360983270437 5.048833580599958E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9325 0.0 23.191957 1 CTCTAAT 1385 0.0 17.097473 1 CTAATAC 1605 0.0 16.713396 3 TAATACT 1665 0.0 16.666666 4 AATACTG 1655 0.0 16.65559 5 GTATTAG 1375 0.0 16.549091 1 ATGCTAG 1370 0.0 16.069344 15 TATACCG 220 0.0 15.977273 5 GGTAAAC 1385 0.0 15.628159 35 ATACTGG 1610 0.0 15.62733 6 TACTGGT 1545 0.0 15.32686 7 TGCTAGA 1455 0.0 15.130585 16 TCTAATA 1590 0.0 15.125786 2 GTATTGG 1580 0.0 15.10443 1 GTATCAA 14405 0.0 15.026032 2 GATGCTA 1505 0.0 14.8737545 14 TTAACGG 945 0.0 14.486773 35 GCTAGAG 1520 0.0 14.483553 17 GTGATGC 1595 0.0 13.918494 12 TAACGGC 985 0.0 13.898477 36 >>END_MODULE