##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088437_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1507952 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.034056123802348 31.0 31.0 33.0 30.0 34.0 2 31.25646704934905 31.0 31.0 34.0 28.0 34.0 3 31.345662196144175 31.0 31.0 34.0 28.0 34.0 4 35.093498997315564 35.0 35.0 37.0 32.0 37.0 5 34.93960616783558 35.0 35.0 37.0 32.0 37.0 6 35.02484163952168 36.0 35.0 37.0 32.0 37.0 7 34.84715428607807 35.0 35.0 37.0 32.0 37.0 8 34.9022767302938 35.0 35.0 37.0 32.0 37.0 9 36.37493965325156 38.0 35.0 39.0 32.0 39.0 10 36.1890027003512 38.0 35.0 39.0 32.0 39.0 11 36.24732551168737 38.0 35.0 39.0 32.0 39.0 12 36.063486105658534 38.0 35.0 39.0 31.0 39.0 13 36.11473972646344 38.0 35.0 39.0 31.0 39.0 14 36.93870627181767 38.0 36.0 40.0 31.0 41.0 15 36.98183960762677 38.0 36.0 40.0 31.0 41.0 16 36.81916931042898 38.0 36.0 40.0 31.0 41.0 17 36.916692308508495 38.0 36.0 40.0 31.0 41.0 18 36.78373051662122 38.0 36.0 40.0 31.0 41.0 19 36.876027884176686 39.0 36.0 40.0 31.0 41.0 20 36.78097976593419 39.0 36.0 40.0 30.0 41.0 21 36.60874484068459 38.0 35.0 40.0 30.0 41.0 22 36.51559665029126 38.0 35.0 40.0 30.0 41.0 23 36.306428851846746 38.0 35.0 40.0 30.0 41.0 24 36.49769356053773 38.0 35.0 40.0 30.0 41.0 25 36.46598167580931 38.0 35.0 40.0 30.0 41.0 26 36.2369604602799 38.0 35.0 40.0 30.0 41.0 27 36.165493994503805 38.0 35.0 40.0 30.0 41.0 28 35.94863961187094 38.0 34.0 40.0 29.0 41.0 29 35.758256894118645 38.0 34.0 40.0 27.0 41.0 30 35.56535486540685 38.0 34.0 40.0 27.0 41.0 31 35.26825920188441 38.0 34.0 40.0 26.0 41.0 32 35.11293927127654 38.0 33.0 40.0 26.0 41.0 33 34.88634120979978 38.0 33.0 40.0 25.0 41.0 34 34.746584108777995 37.0 33.0 40.0 25.0 41.0 35 34.477064256687214 37.0 33.0 40.0 24.0 41.0 36 34.33658697359067 37.0 33.0 40.0 24.0 41.0 37 34.141484609589696 37.0 33.0 40.0 23.0 41.0 38 34.05086103536452 37.0 33.0 40.0 23.0 41.0 39 33.93798874234724 37.0 33.0 40.0 22.0 41.0 40 33.78378091610343 37.0 32.0 40.0 21.0 41.0 41 33.5449881693847 37.0 32.0 40.0 20.0 41.0 42 33.27800022812397 37.0 31.0 40.0 18.0 41.0 43 32.94142917015926 36.0 31.0 40.0 17.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 0.0 13 5.0 14 4.0 15 13.0 16 44.0 17 91.0 18 222.0 19 513.0 20 1088.0 21 2179.0 22 3789.0 23 6208.0 24 9472.0 25 14224.0 26 19994.0 27 27128.0 28 35457.0 29 45200.0 30 55181.0 31 66670.0 32 79535.0 33 95026.0 34 113027.0 35 134211.0 36 166327.0 37 209919.0 38 251498.0 39 170926.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.47542627351534 22.43387057412968 14.348666270544422 22.742036881810563 2 19.996657718548068 24.634802699290162 33.39781372351375 21.97072585864802 3 20.819694526085712 25.115587233545895 32.36568537990599 21.699032860462403 4 14.855380012095875 17.04231964943181 35.16796290598109 32.93433743249122 5 12.674541364711875 39.305296189799144 34.26667427079907 13.75348817468991 6 32.809996604666466 37.33772693030017 13.025414602056298 16.826861862977072 7 26.2567376149904 33.09787048924634 21.02102719449956 19.6243647012637 8 27.920782624380617 34.13139145012573 18.477113329867265 19.470712595626384 9 24.866839262788208 14.261461903296658 21.269045699067345 39.60265313484779 10 16.734418602183624 27.8337108873492 32.881484291277175 22.55038621919 11 33.688008636879694 22.402503527963756 23.102525809840103 20.806962025316455 12 21.327469309367938 27.39490381656711 30.580747928316022 20.696878945748935 13 32.40646917143251 20.6346090591743 25.919525289929652 21.039396479463537 14 20.72546075737159 22.854308359947797 27.501604825617793 28.918626057062824 15 22.999936337496155 29.609231593578578 25.057627829002517 22.333204239922754 16 22.043075641664984 28.050163400426538 26.44759249631288 23.459168461595596 17 22.26111971733848 26.50190456990674 26.834673782719875 24.40230193003491 18 23.369311490020902 25.168108799219073 29.146484768745957 22.316094942014068 19 23.16598936836186 24.418814391970038 30.486248899169205 21.9289473404989 20 24.031865735779387 24.285719969866413 30.116409540887247 21.566004753466956 21 23.03707279807315 24.995755833076917 30.711653951849925 21.25551741700001 22 21.68371407047439 25.46606258024128 30.326960009337167 22.52326333994716 23 22.743296868865855 25.693987607032586 31.014780311309643 20.547935212791916 24 22.56630184515157 25.643057603955565 28.768820227699553 23.021820323193314 25 22.586527953144397 25.93311988710516 29.56546362218426 21.91488853756618 26 22.294210956316913 26.618685475399744 29.82117467930014 21.265928888983204 27 21.30843687332223 26.70336986853693 29.42142720723206 22.566766050908782 28 21.90527284688107 26.30541290438953 29.47089827792927 22.31841597080013 29 22.0083928400904 26.24254618184133 29.002580984010102 22.746479994058166 30 21.940287223996517 26.471068044606195 30.54255042600825 21.046094305389033 31 22.72651914649803 26.12682631807909 30.31608433159676 20.830570203826117 32 22.316824408203974 26.049303956624613 29.28607807145055 22.34779356372086 33 22.01257069190531 26.14751663182913 29.669047821150805 22.170864855114754 34 21.274218277504854 26.942701093934023 30.16064171803877 21.62243891052235 35 20.78222648996785 28.820347066750134 29.313466211126084 21.08396023215593 36 23.03541492036882 26.325639012382357 29.28488439950343 21.35406166774539 37 21.946388213948453 27.19768268486 29.090514817447772 21.76541428374378 38 21.922116884357063 25.649423854340192 30.40129924559933 22.027160015703416 39 21.42521777881524 25.511952635097142 31.1336833002642 21.92914628582342 40 20.308670302503 26.325572697274186 30.674782751705624 22.690974248517193 41 21.721513682133118 25.21937037783696 30.72597801521534 22.333137924814583 42 20.43738792746719 26.966242957335513 30.19227402463739 22.40409509055991 43 20.724598660965334 26.90304465924645 29.411811516546948 22.96054516324127 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 90.0 1 154.5 2 219.0 3 482.5 4 746.0 5 746.0 6 1416.0 7 2086.0 8 2469.0 9 2852.0 10 4449.5 11 6047.0 12 6047.0 13 11963.5 14 17880.0 15 29542.0 16 41204.0 17 36825.5 18 32447.0 19 32447.0 20 34735.5 21 37024.0 22 29271.0 23 21518.0 24 23631.0 25 25744.0 26 25744.0 27 28258.5 28 30773.0 29 33332.5 30 35892.0 31 38940.5 32 41989.0 33 41989.0 34 46450.5 35 50912.0 36 55509.0 37 60106.0 38 64223.0 39 68340.0 40 68340.0 41 71033.5 42 73727.0 43 78772.0 44 83817.0 45 90762.0 46 97707.0 47 97707.0 48 126919.5 49 156132.0 50 148261.5 51 140391.0 52 130667.5 53 120944.0 54 120944.0 55 107569.5 56 94195.0 57 81338.5 58 68482.0 59 60630.5 60 52779.0 61 52779.0 62 46996.0 63 41213.0 64 36120.0 65 31027.0 66 27082.0 67 23137.0 68 23137.0 69 20209.0 70 17281.0 71 14807.5 72 12334.0 73 10128.0 74 7922.0 75 7922.0 76 6365.0 77 4808.0 78 3794.5 79 2781.0 80 2237.5 81 1694.0 82 1694.0 83 1283.5 84 873.0 85 655.5 86 438.0 87 325.5 88 213.0 89 213.0 90 162.0 91 111.0 92 82.5 93 54.0 94 35.5 95 17.0 96 17.0 97 11.0 98 5.0 99 3.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1507952.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 53.39398738900765 #Duplication Level Percentage of deduplicated Percentage of total 1 83.14448011183364 44.39415322556843 2 9.582810968522589 10.233289760090784 3 2.788029277648221 4.465920002727996 4 1.2003878641983443 2.5637397793169687 5 0.6836657985377825 1.8251821512711102 6 0.45589317986936523 1.460517281800769 7 0.31478649521830304 1.1765394309141193 8 0.23663611639337334 1.0107956651593217 9 0.2019992218701694 0.9706989514612664 >10 1.208729651223813 12.254379669448223 >50 0.10939809365292971 4.06366413726155 >100 0.06434653314175928 6.193643232341508 >500 0.004978415712617347 1.8914906321007532 >1k 0.0033604306060167092 3.6392404695827407 >5k 1.2446039281543367E-4 0.47388608711346214 >10k+ 3.73381178446301E-4 3.3828595238410863 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 20666 1.3704680255074433 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 17168 1.1384977771175742 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 13071 0.8668047789319554 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7131 0.4728930363831209 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 4608 0.3055800184621261 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 4485 0.29742326015682197 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 4126 0.27361613632264153 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3906 0.2590268125245366 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 3599 0.23866807431536285 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 3036 0.20133266841384873 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 2417 0.16028361645463515 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2153 0.1427764278969092 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1797 0.1191682493872484 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 1725 0.11439356159877768 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 1681 0.11147569683915667 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 1672 0.11087886086559784 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 1617 0.1072315299160716 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 1548 0.1026557874521205 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1533 0.10166106082952243 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 1521 0.10086527953144397 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 1514 0.10040107377423155 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 6.631510817320445E-5 0.0 0.0 0.0 0.0 7 6.631510817320445E-5 0.0 6.631510817320445E-5 0.0 0.0 8 1.326302163464089E-4 0.0 6.631510817320445E-5 0.0 0.0 9 1.326302163464089E-4 0.0 6.631510817320445E-5 1.9894532451961334E-4 0.0 10 1.326302163464089E-4 0.0 6.631510817320445E-5 1.9894532451961334E-4 0.0 11 1.326302163464089E-4 0.0 6.631510817320445E-5 3.3157554086602224E-4 0.0 12 1.326302163464089E-4 0.0 6.631510817320445E-5 3.978906490392267E-4 0.0 13 2.652604326928178E-4 0.0 6.631510817320445E-5 3.978906490392267E-4 0.0 14 2.652604326928178E-4 0.0 1.326302163464089E-4 6.631510817320445E-4 0.0 15 2.652604326928178E-4 0.0 1.326302163464089E-4 0.0010610417307712712 0.0 16 2.652604326928178E-4 0.0 1.326302163464089E-4 0.0012599870552908847 0.0 17 2.652604326928178E-4 0.0 1.326302163464089E-4 0.0015915625961569068 0.0 18 2.652604326928178E-4 0.0 1.326302163464089E-4 0.0023210287860621556 0.0 19 2.652604326928178E-4 0.0 1.326302163464089E-4 0.0034483856250066315 0.0 20 2.652604326928178E-4 0.0 1.326302163464089E-4 0.005703099302895583 0.0 21 2.652604326928178E-4 0.0 1.326302163464089E-4 0.009284115144248622 0.0 22 2.652604326928178E-4 0.0 1.326302163464089E-4 0.016446146826954704 0.0 23 2.652604326928178E-4 0.0 1.326302163464089E-4 0.02022610799282736 0.0 24 2.652604326928178E-4 0.0 1.326302163464089E-4 0.026260782836588965 0.0 25 2.652604326928178E-4 0.0 1.326302163464089E-4 0.0313007310577525 0.0 26 2.652604326928178E-4 0.0 1.326302163464089E-4 0.03859539295680499 6.631510817320445E-5 27 2.652604326928178E-4 0.0 1.326302163464089E-4 0.08063917153861662 6.631510817320445E-5 28 2.652604326928178E-4 0.0 1.326302163464089E-4 0.17023088268061584 6.631510817320445E-5 29 2.652604326928178E-4 0.0 1.326302163464089E-4 0.28024764713996203 6.631510817320445E-5 30 2.652604326928178E-4 0.0 1.326302163464089E-4 0.4381439197003618 6.631510817320445E-5 31 2.652604326928178E-4 0.0 1.326302163464089E-4 0.614343162116566 6.631510817320445E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5920 0.0 23.875 1 TCCGATC 45 0.0038263535 20.555555 8 CGACCTA 70 1.2195176E-4 18.5 13 CCGTTTA 235 0.0 17.319149 27 CGTTTAC 240 0.0 16.958334 28 CGCCGTT 255 0.0 16.686274 25 CTATACA 100 5.880238E-6 16.65 4 GTACTTA 70 0.0025929967 15.857142 1 GTTATCG 105 9.346884E-6 15.857142 11 GTATCAA 8880 0.0 15.833333 2 GTATTGG 630 0.0 15.563493 1 TAATACT 335 0.0 15.462687 4 ACCGTTA 265 0.0 15.358491 8 CTATATC 110 1.4523872E-5 15.136364 2 TCTATAC 135 3.9742372E-7 15.074075 3 CCGTTAT 295 0.0 15.050847 9 GCGTTAT 75 0.0041051963 14.8 11 TGGACTA 100 1.0937233E-4 14.799999 5 GACCGTT 275 0.0 14.799999 7 GTAGCAC 100 1.0937233E-4 14.799999 3 >>END_MODULE