##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088435_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1325774 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.798838263535114 31.0 31.0 31.0 28.0 34.0 2 30.989883645327183 31.0 31.0 34.0 28.0 34.0 3 31.06622093961716 31.0 31.0 34.0 28.0 34.0 4 34.83185897445568 35.0 35.0 37.0 32.0 37.0 5 34.625714488291365 35.0 35.0 37.0 32.0 37.0 6 34.77371708903629 35.0 35.0 37.0 32.0 37.0 7 34.62678857784208 35.0 35.0 37.0 31.0 37.0 8 34.68332159176451 35.0 35.0 37.0 31.0 37.0 9 36.148619598815486 38.0 35.0 39.0 32.0 39.0 10 35.87622626480833 37.0 35.0 39.0 30.0 39.0 11 35.9867254901665 37.0 35.0 39.0 30.0 39.0 12 35.77159229250234 37.0 35.0 39.0 30.0 39.0 13 35.83931499637193 37.0 35.0 39.0 30.0 39.0 14 36.65754495110026 38.0 36.0 40.0 31.0 41.0 15 36.69711051808227 38.0 36.0 40.0 31.0 41.0 16 36.51265751176294 38.0 35.0 40.0 30.0 41.0 17 36.581289872934605 38.0 35.0 40.0 30.0 41.0 18 36.43360557681777 38.0 35.0 40.0 30.0 41.0 19 36.51295545092904 38.0 35.0 40.0 30.0 41.0 20 36.39872029471086 38.0 35.0 40.0 30.0 41.0 21 36.22425617035784 38.0 34.0 40.0 29.0 41.0 22 36.10465282921523 38.0 34.0 40.0 29.0 41.0 23 35.88357593375643 38.0 34.0 40.0 27.0 41.0 24 36.108252990328666 38.0 34.0 40.0 29.0 41.0 25 36.06039113755436 38.0 34.0 40.0 29.0 41.0 26 35.830448477644005 38.0 34.0 40.0 28.0 41.0 27 35.754753826821165 38.0 34.0 40.0 27.0 41.0 28 35.5456533315633 38.0 34.0 40.0 27.0 41.0 29 35.37005552982635 38.0 34.0 40.0 27.0 41.0 30 35.210948472364066 38.0 34.0 40.0 26.0 41.0 31 34.92559214466417 38.0 33.0 40.0 25.0 41.0 32 34.768770544602624 37.0 33.0 40.0 25.0 41.0 33 34.555160985205625 37.0 33.0 40.0 25.0 41.0 34 34.42948194790364 37.0 33.0 40.0 24.0 41.0 35 34.145315868315414 37.0 33.0 40.0 24.0 41.0 36 34.020601550490504 37.0 33.0 40.0 23.0 41.0 37 33.865121053814605 37.0 32.0 40.0 23.0 41.0 38 33.78097549054364 37.0 32.0 40.0 22.0 41.0 39 33.690508337016716 37.0 32.0 40.0 21.0 41.0 40 33.563458779550665 37.0 32.0 40.0 21.0 41.0 41 33.348156623979655 37.0 31.0 40.0 19.0 41.0 42 33.122640812084114 37.0 31.0 40.0 18.0 41.0 43 32.7872744525085 36.0 31.0 39.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 3.0 13 7.0 14 12.0 15 21.0 16 62.0 17 148.0 18 323.0 19 674.0 20 1323.0 21 2397.0 22 4171.0 23 6526.0 24 10033.0 25 14360.0 26 19531.0 27 25472.0 28 33611.0 29 42717.0 30 52051.0 31 61795.0 32 74364.0 33 88359.0 34 105161.0 35 124426.0 36 153588.0 37 189580.0 38 218060.0 39 96998.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.743104028288386 24.37828770212721 14.722946746579735 22.155661523004675 2 21.554352400937113 25.395353959272093 31.871118305231512 21.179175334559282 3 22.005258814850798 25.993193410038213 31.222591482409523 20.77895629270147 4 16.727662482444217 18.844011121050798 34.25236880493961 30.17595759156538 5 12.7441026902021 39.9101958554022 34.431509442785874 12.91419201160982 6 32.49362259329267 38.74257603482947 13.499661329909923 15.264140041967938 7 26.184025331617605 33.04069924436593 21.78146501590769 18.99381040810877 8 27.180726126775756 35.39509750530633 18.88956941379149 18.53460695412642 9 25.192302760500656 14.196989833863086 20.760099383454495 39.85060802218176 10 16.17681444952156 28.721335612253675 33.70770583824996 21.394144099974806 11 34.342655686414126 22.663440375207237 22.548111518252732 20.445792420125905 12 20.536984433244278 27.765592023979956 30.92699057305393 20.77043296972184 13 31.49232071227826 21.159488721305443 25.730252667498384 21.617937898917916 14 20.59725111519761 22.766851665517652 27.538026843187453 29.097870376097283 15 23.355262661660284 29.968984155670576 24.582470315453463 22.09328286721568 16 22.174367576977673 28.380628975979317 26.31112089994222 23.133882547100786 17 22.140953133792035 27.426921933904268 27.172429086707083 23.25969584559661 18 22.7409799860308 26.18545845672038 28.857482497016836 22.216079060231987 19 22.88640447014348 25.679791578353473 29.831856711626564 21.60194723987648 20 23.45905109015564 25.51098452677455 29.58128610155275 21.44867828151706 21 22.734191498701893 26.141634999630405 29.784337300324186 21.339836201343516 22 21.995679504953333 26.5039139400833 29.440990696755254 22.059415858208112 23 22.5140182263342 26.55475216741315 29.891746255394963 21.039483350857687 24 22.52231526640287 26.804493073480096 28.270429198339986 22.402762461777044 25 22.62768767527497 26.528277066830398 29.003434974588426 21.840600283306205 26 22.250096924513528 27.29062419386713 29.04409047092491 21.415188410694434 27 22.00359940683706 26.900135317180755 28.834929633557454 22.261335642424726 28 22.021702039714157 27.078672533931126 29.11453988387161 21.785085542483106 29 22.367386900029718 26.751693727588567 28.662954621225033 22.217964751156682 30 22.16154487868973 26.95881801875735 29.627749525937304 21.251887576615623 31 22.54328414948551 26.906999232146656 29.482023331276675 21.067693287091164 32 22.10444615748989 26.61479256645552 28.898515131538254 22.382246144516333 33 22.039427534406318 26.80751017895961 29.140185280447493 22.012877006186574 34 21.776939357688416 27.0725628953351 29.543044289599884 21.607453457376597 35 21.32708893069256 28.444365329234095 28.99362938178 21.234916358293344 36 23.032281520078083 26.831269884610805 28.68505491886249 21.451393676448628 37 21.977727727350214 27.239484255989332 28.89293348640115 21.889854530259306 38 21.993492103480683 26.185232173809414 29.782904175221418 22.038371547488484 39 21.50057249576474 26.250854217988888 30.26511305848508 21.98346022776129 40 20.90839011777271 26.78601330241806 29.92847951460807 22.37711706520116 41 21.7976065302231 25.796628988047736 29.998853499917782 22.40691098181138 42 20.93758061328703 27.058759637766315 29.56816169271686 22.435498056229793 43 21.282586624869698 26.559881246728327 29.27587959938873 22.88165252901324 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 102.0 1 150.5 2 199.0 3 328.5 4 458.0 5 458.0 6 891.5 7 1325.0 8 1594.0 9 1863.0 10 3057.5 11 4252.0 12 4252.0 13 8623.5 14 12995.0 15 20925.0 16 28855.0 17 25547.0 18 22239.0 19 22239.0 20 25289.5 21 28340.0 22 23683.0 23 19026.0 24 21660.0 25 24294.0 26 24294.0 27 27197.0 28 30100.0 29 33744.5 30 37389.0 31 41470.5 32 45552.0 33 45552.0 34 50716.5 35 55881.0 36 60613.0 37 65345.0 38 68628.5 39 71912.0 40 71912.0 41 74305.5 42 76699.0 43 79980.5 44 83262.0 45 85601.0 46 87940.0 47 87940.0 48 102632.5 49 117325.0 50 111922.5 51 106520.0 52 99944.5 53 93369.0 54 93369.0 55 85405.5 56 77442.0 57 68195.0 58 58948.0 59 53307.0 60 47666.0 61 47666.0 62 42479.5 63 37293.0 64 32641.0 65 27989.0 66 24161.5 67 20334.0 68 20334.0 69 17478.0 70 14622.0 71 12336.0 72 10050.0 73 8381.0 74 6712.0 75 6712.0 76 5400.0 77 4088.0 78 3224.0 79 2360.0 80 1883.5 81 1407.0 82 1407.0 83 1093.0 84 779.0 85 592.0 86 405.0 87 315.0 88 225.0 89 225.0 90 180.0 91 135.0 92 90.5 93 46.0 94 32.0 95 18.0 96 18.0 97 14.0 98 10.0 99 6.5 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1325774.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 62.431392553183215 #Duplication Level Percentage of deduplicated Percentage of total 1 85.93746877649377 53.65195848212208 2 8.53337944766213 10.655015242045202 3 2.264100017373372 4.240527508929177 4 0.9443041913127219 2.3581690262984307 5 0.5253050865235579 1.6397764033468056 6 0.3501602217278497 1.3116594155520638 7 0.22802951774821933 0.9965340235376499 8 0.16432345653086072 0.8207153776299283 9 0.13140408920114405 0.7383366248409114 >10 0.7992073404784167 9.3132726660463 >50 0.0729076186332251 3.2198472148162205 >100 0.04432390714171322 5.39543176005561 >500 0.0035119891910373683 1.4979127385890019 >1k 0.0010899276799771142 1.2602064166566467 >5k 2.4220615110602536E-4 0.956646975639342 >10k+ 2.4220615110602536E-4 1.9439901238946302 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 13947 1.051989253070282 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 11765 0.8874061491626778 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 7504 0.5660089879572234 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5149 0.38837690285071214 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 2561 0.19317017832601938 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 2300 0.17348356507217672 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 2269 0.17114530832555172 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 2106 0.15885060349652352 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 2034 0.15341981363339452 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1530 0.11540428459149146 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 1455 0.10974721181739874 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1342 0.10122388883776572 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 7.542763698790292E-5 2 0.0 0.0 0.0 7.542763698790292E-5 7.542763698790292E-5 3 0.0 0.0 0.0 7.542763698790292E-5 7.542763698790292E-5 4 0.0 0.0 0.0 7.542763698790292E-5 7.542763698790292E-5 5 0.0 0.0 0.0 7.542763698790292E-5 7.542763698790292E-5 6 0.0 0.0 0.0 7.542763698790292E-5 7.542763698790292E-5 7 0.0 0.0 0.0 7.542763698790292E-5 7.542763698790292E-5 8 0.0 0.0 0.0 7.542763698790292E-5 7.542763698790292E-5 9 0.0 0.0 0.0 1.5085527397580583E-4 7.542763698790292E-5 10 0.0 0.0 0.0 1.5085527397580583E-4 7.542763698790292E-5 11 0.0 0.0 0.0 2.2628291096370875E-4 7.542763698790292E-5 12 0.0 0.0 0.0 4.525658219274175E-4 7.542763698790292E-5 13 0.0 0.0 0.0 6.034210959032233E-4 7.542763698790292E-5 14 0.0 0.0 0.0 6.034210959032233E-4 7.542763698790292E-5 15 0.0 0.0 0.0 6.788487328911263E-4 7.542763698790292E-5 16 0.0 0.0 0.0 0.0012068421918064467 7.542763698790292E-5 17 0.0 0.0 0.0 0.0015085527397580582 7.542763698790292E-5 18 0.0 0.0 0.0 0.0017348356507217672 7.542763698790292E-5 19 0.0 0.0 0.0 0.0021874014726491844 7.542763698790292E-5 20 0.0 0.0 0.0 0.00362052657541934 7.542763698790292E-5 21 0.0 0.0 0.0 0.006185066233008039 7.542763698790292E-5 22 0.0 0.0 0.0 0.010710724452282215 7.542763698790292E-5 23 0.0 0.0 0.0 0.012822698287943496 7.542763698790292E-5 24 0.0 0.0 0.0 0.016895790685290252 7.542763698790292E-5 25 0.0 0.0 0.0 0.020516317260709592 7.542763698790292E-5 26 0.0 0.0 0.0 0.02662595585672973 7.542763698790292E-5 27 0.0 0.0 0.0 0.05770214229574573 7.542763698790292E-5 28 0.0 0.0 0.0 0.12551158794787046 7.542763698790292E-5 29 0.0 0.0 0.0 0.2123287981209467 7.542763698790292E-5 30 0.0 0.0 0.0 0.3207937401095511 7.542763698790292E-5 31 0.0 0.0 0.0 0.45399894703018767 7.542763698790292E-5 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGCGCTA 45 0.003826113 20.555555 10 GGTATCA 4025 0.0 20.453415 1 TACGCAG 60 9.2378375E-4 18.5 5 CGTAACG 80 1.6169754E-5 18.5 26 GCGTAAC 85 2.723626E-5 17.411764 25 AGCGTAC 75 2.067568E-4 17.266666 10 TAGCGAA 110 7.809813E-7 16.818182 18 TTCGCTA 135 3.9731822E-7 15.074073 26 TCGTAGT 75 0.004104848 14.8 23 ACGAATG 100 1.0935645E-4 14.8 18 GTATCAA 5690 0.0 14.500878 2 GGCGTAA 115 2.2102386E-5 14.478261 24 GTAATAC 155 1.2103737E-7 14.322581 3 ATCTAGT 130 4.4449116E-6 14.230769 1 GTTACAC 105 1.655933E-4 14.095239 3 CTACTCG 160 1.7836828E-7 13.875 14 GCCTATC 80 0.0062992936 13.875 7 TATACTG 160 1.7836828E-7 13.875 5 ACGTTCG 120 3.3011107E-5 13.874999 22 TGGCGTA 120 3.3011107E-5 13.874999 23 >>END_MODULE