##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088434_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3088815 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.385456882331898 31.0 31.0 34.0 30.0 34.0 2 31.563425132291833 31.0 31.0 34.0 30.0 34.0 3 31.675313672071653 31.0 31.0 34.0 30.0 34.0 4 35.3663430797895 37.0 35.0 37.0 33.0 37.0 5 35.25976887576627 37.0 35.0 37.0 33.0 37.0 6 35.32437293913685 37.0 35.0 37.0 33.0 37.0 7 35.14072710732109 37.0 35.0 37.0 32.0 37.0 8 35.20031144629898 37.0 35.0 37.0 32.0 37.0 9 36.72424764837 39.0 35.0 39.0 32.0 39.0 10 36.585846028331254 39.0 35.0 39.0 32.0 39.0 11 36.617984243148264 39.0 35.0 39.0 32.0 39.0 12 36.464245997251375 38.0 35.0 39.0 32.0 39.0 13 36.47924916189542 38.0 35.0 39.0 32.0 39.0 14 37.3761037808998 39.0 36.0 41.0 32.0 41.0 15 37.40990994928476 39.0 36.0 41.0 32.0 41.0 16 37.269133632153434 39.0 36.0 41.0 32.0 41.0 17 37.37091926839257 39.0 36.0 41.0 32.0 41.0 18 37.25880280949167 39.0 36.0 40.0 31.0 41.0 19 37.34655814608515 39.0 36.0 41.0 31.0 41.0 20 37.25802807872922 39.0 36.0 41.0 31.0 41.0 21 37.101973086766286 39.0 36.0 40.0 31.0 41.0 22 37.007617160626324 39.0 36.0 40.0 31.0 41.0 23 36.79198009592675 39.0 35.0 40.0 30.0 41.0 24 36.982840992419426 39.0 36.0 40.0 31.0 41.0 25 36.94924105198919 39.0 36.0 41.0 31.0 41.0 26 36.74789652342403 39.0 35.0 40.0 30.0 41.0 27 36.68856406097484 39.0 35.0 40.0 30.0 41.0 28 36.47097673379597 39.0 35.0 40.0 30.0 41.0 29 36.28545413046751 38.0 35.0 40.0 30.0 41.0 30 36.07948452723779 38.0 35.0 40.0 29.0 41.0 31 35.762809362166394 38.0 34.0 40.0 28.0 41.0 32 35.598377695006015 38.0 34.0 40.0 27.0 41.0 33 35.366788881820376 38.0 34.0 40.0 27.0 41.0 34 35.219853568439675 38.0 34.0 40.0 26.0 41.0 35 34.94918212971641 38.0 33.0 40.0 25.0 41.0 36 34.77670789607018 38.0 33.0 40.0 25.0 41.0 37 34.58762276147973 38.0 33.0 40.0 24.0 41.0 38 34.47048593068863 38.0 33.0 40.0 24.0 41.0 39 34.34138269854297 38.0 33.0 40.0 23.0 41.0 40 34.170607174596086 37.0 33.0 40.0 22.0 41.0 41 33.92380087509287 37.0 33.0 40.0 21.0 41.0 42 33.62413385068384 37.0 32.0 40.0 19.0 41.0 43 33.26210763674742 37.0 32.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 2.0 12 1.0 13 4.0 14 11.0 15 25.0 16 60.0 17 139.0 18 304.0 19 713.0 20 1588.0 21 3217.0 22 5966.0 23 10046.0 24 16175.0 25 23902.0 26 34769.0 27 47491.0 28 62447.0 29 80986.0 30 100137.0 31 120443.0 32 145829.0 33 177828.0 34 213633.0 35 257471.0 36 323607.0 37 434411.0 38 525069.0 39 502538.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.23953198880477 21.03123689829271 14.04224597458896 22.68698513831356 2 19.2758064176715 23.955756495614015 34.519840132866484 22.248596953847997 3 20.245013055168407 24.835122854557493 32.65362282946697 22.26624126080714 4 13.853403327813417 16.185559834434887 35.73758868692363 34.22344815082807 5 12.648475224317416 38.78166869819008 34.354663519828804 14.2151925576637 6 32.661813672881024 36.88356214276349 12.904884235540168 17.549739948815322 7 26.15167952758582 33.02111003734442 20.881762099704904 19.94544833536486 8 28.146036586846414 33.572680785349725 18.268365052617266 20.012917575186602 9 24.625333663557058 14.419445645012733 21.62978359014703 39.32543710128318 10 17.087491481360974 27.468041951363226 32.40404491690179 23.04042165037401 11 33.133612728505916 22.44349370227741 23.204497517656446 21.218396051560227 12 21.914650116630487 27.385712643845615 30.30145865000008 20.398178589523813 13 32.78231295820566 20.52683634338735 25.760655785471126 20.930194912935868 14 20.752424473463122 23.16807578310776 27.721245849945692 28.358253893483422 15 23.124790575026346 29.245649221465193 25.520045713323718 22.109514490184747 16 21.93961114537452 27.971697884140035 26.5554913453865 23.53319962509895 17 22.223571175353655 26.24757390779312 26.75605369696793 24.772801219885295 18 23.653990284299965 24.70235349154935 29.461654388495262 22.18200183565542 19 23.068361167632247 24.231137183677234 30.917584899063232 21.782916749627283 20 24.186945479091495 23.7335353525543 30.517075318528303 21.562443849825904 21 22.718518266713932 24.887149278930593 31.196105950016427 21.198226504339043 22 21.419541150894435 25.39093471120802 30.64502082513844 22.5445033127591 23 22.503128222311794 25.52163208220628 31.489098570163637 20.486141125318287 24 22.42895738333309 25.69043468126126 28.958969701973086 22.92163823343256 25 22.353977172475528 25.692150549644445 29.984443872488313 21.96942840539171 26 22.124180308629686 26.623575707836178 30.201808784274874 21.05043519925926 27 21.08650081018125 26.51408388006404 29.80864830039999 22.59076700935472 28 21.437217832728734 26.43868279582947 29.79084211906508 22.333257252376722 29 21.936179408608155 26.229476352581816 29.113041732832816 22.72130250597721 30 21.53068409729945 26.523925842110973 31.265873805974138 20.679516254615443 31 22.546445805268363 26.16514747565005 30.75716739267324 20.53123932640835 32 21.99856579303066 25.95221792175964 29.548710427785412 22.500505857424287 33 21.592390609343713 26.151970901462214 30.22074808624019 22.034890402953884 34 20.960206422203985 26.867941265501493 30.65687002944495 21.51498228284957 35 20.282114662095335 29.238235375054835 29.517468673261426 20.962181289588404 36 22.89933194445119 26.628108190357793 29.39259877979096 21.079961085400065 37 21.578145664275784 27.516021516342025 29.23334676890652 21.672486050475666 38 21.47438418940597 25.819221934625414 30.812463679436934 21.89393019653168 39 20.974516117022223 25.46915240958102 31.55533756472952 22.00099390866724 40 19.69357180666372 26.44421889948087 31.216210747487306 22.645998546368105 41 21.51274841646392 24.982946534512426 31.201674428542987 22.30263062048067 42 19.7723722527895 27.188355404904467 30.797700736366533 22.241571605939495 43 20.3335259638405 26.989832670457766 29.801137329364174 22.87550403633756 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 166.0 1 365.5 2 565.0 3 1596.0 4 2627.0 5 2627.0 6 4133.0 7 5639.0 8 6272.0 9 6905.0 10 10772.5 11 14640.0 12 14640.0 13 28154.5 14 41669.0 15 67630.0 16 93591.0 17 84289.5 18 74988.0 19 74988.0 20 77663.5 21 80339.0 22 61333.0 23 42327.0 24 46284.5 25 50242.0 26 50242.0 27 54200.5 28 58159.0 29 62296.5 30 66434.0 31 71816.0 32 77198.0 33 77198.0 34 85758.0 35 94318.0 36 105022.0 37 115726.0 38 123578.5 39 131431.0 40 131431.0 41 136853.5 42 142276.0 43 154003.0 44 165730.0 45 181251.5 46 196773.0 47 196773.0 48 267553.0 49 338333.0 50 322286.0 51 306239.0 52 281626.0 53 257013.0 54 257013.0 55 228745.5 56 200478.0 57 168789.5 58 137101.0 59 121315.0 60 105529.0 61 105529.0 62 93613.0 63 81697.0 64 71925.5 65 62154.0 66 53972.5 67 45791.0 68 45791.0 69 39688.0 70 33585.0 71 28588.5 72 23592.0 73 19497.5 74 15403.0 75 15403.0 76 12268.0 77 9133.0 78 7144.5 79 5156.0 80 3999.0 81 2842.0 82 2842.0 83 2159.0 84 1476.0 85 1109.0 86 742.0 87 578.0 88 414.0 89 414.0 90 334.0 91 254.0 92 178.0 93 102.0 94 62.0 95 22.0 96 22.0 97 16.5 98 11.0 99 8.0 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3088815.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.128111607106725 #Duplication Level Percentage of deduplicated Percentage of total 1 78.16136935203755 33.70952260778966 2 11.7300881502915 10.117931018139439 3 4.090368853059173 5.292296532269073 4 1.782714252156724 3.0754039692237995 5 0.9858523655850296 2.1258975425540667 6 0.5800650152284629 1.5010265229690725 7 0.42599007222722224 1.2860503164974568 8 0.2870985034405203 0.9905613038892859 9 0.21873274660133463 0.8490177276796216 >10 1.4464430179266294 12.030547840168234 >50 0.15795109945602498 4.737124813315254 >100 0.11681289233525542 9.857159068524838 >500 0.0095010211711314 2.7538872882442953 >1k 0.006107799324289179 5.1524206435027855 >5k 4.5242957957697627E-4 1.439432212091522 >10k+ 4.5242957957697627E-4 5.081720593141596 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 47601 1.5410764322240083 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 38420 1.2438427034315749 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 32866 1.0640326468241057 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16663 0.5394625446975619 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 10444 0.338123196112425 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 10267 0.3323928432100984 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 9537 0.30875918434739535 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 8211 0.2658300998926773 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 8053 0.260714869618284 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 7557 0.24465693154170776 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 5707 0.18476341250609055 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5197 0.1682522261773528 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 4956 0.16044988126514537 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 4487 0.14526606481773754 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 4288 0.1388234646620144 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3834 0.12412527134192239 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3818 0.12360727333945219 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 3796 0.12289502608605565 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 3698 0.11972228832092566 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 3613 0.11697042393280271 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 3516 0.1138300610428271 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 3492 0.1130530640391218 No Hit GTATTGGACCCTCGCATGTGCGTTGCTGCATTTTACTCTTCTC 3159 0.1022722306127107 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 6.474975030877537E-5 0.0 0.0 0.0 0.0 7 6.474975030877537E-5 0.0 0.0 0.0 0.0 8 9.712462546316306E-5 0.0 0.0 0.0 0.0 9 9.712462546316306E-5 0.0 0.0 1.9424925092632612E-4 0.0 10 1.6187437577193842E-4 0.0 0.0 2.913738763894892E-4 0.0 11 1.6187437577193842E-4 0.0 0.0 5.17998002470203E-4 0.0 12 1.6187437577193842E-4 0.0 0.0 6.474975030877537E-4 0.0 13 1.6187437577193842E-4 0.0 0.0 6.798723782421414E-4 0.0 14 1.9424925092632612E-4 0.0 0.0 9.064965043228552E-4 0.0 15 1.9424925092632612E-4 0.0 0.0 0.0012302452558667321 0.0 16 2.266241260807138E-4 0.0 0.0 0.0015216191322562213 0.0 17 2.266241260807138E-4 0.0 0.0 0.002395740761424689 0.0 18 2.266241260807138E-4 0.0 0.0 0.002784239263277341 0.0 19 2.589990012351015E-4 0.0 0.0 0.0039821096439896855 0.0 20 2.589990012351015E-4 0.0 0.0 0.00699297303334774 0.0 21 2.589990012351015E-4 0.0 0.0 0.011719704805888343 0.0 22 2.913738763894892E-4 0.0 0.0 0.018000430585839552 0.0 23 2.913738763894892E-4 0.0 0.0 0.02240341360683628 0.0 24 2.913738763894892E-4 0.0 0.0 0.028781264012250653 0.0 25 2.913738763894892E-4 0.0 0.0 0.033410871159328094 0.0 26 3.2374875154387683E-4 0.0 0.0 0.042993834205026844 0.0 27 3.2374875154387683E-4 0.0 0.0 0.09663900233584724 0.0 28 3.2374875154387683E-4 0.0 0.0 0.21396554989534822 0.0 29 3.2374875154387683E-4 0.0 0.0 0.3628576007303772 0.0 30 3.2374875154387683E-4 0.0 0.0 0.564261699065823 0.0 31 3.2374875154387683E-4 0.0 0.0 0.7913714482738526 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14925 0.0 19.683752 1 GTATTGG 1550 0.0 18.97742 1 TTGGACC 2225 0.0 16.795506 4 ATTGGAC 1835 0.0 16.735695 3 ACCGTTA 555 0.0 16.666666 8 ACGTTTA 105 9.353231E-6 15.857142 26 ATAACGC 130 2.5928966E-7 15.653846 3 TGGACCC 2355 0.0 15.55414 5 GGACCCT 2375 0.0 14.955789 6 GTATTAG 570 0.0 14.929826 1 TACATCG 125 2.9624753E-6 14.800001 5 CTCTAAT 480 0.0 14.645833 1 CCGTTAT 655 0.0 14.404579 9 CTAATAC 545 0.0 14.256881 3 ACCGTGT 235 3.6379788E-12 14.170214 8 CGTTTAC 655 0.0 14.122137 28 TATACTG 305 0.0 13.95082 5 TATTGGA 2005 0.0 13.932669 2 CGAACTA 505 0.0 13.920792 24 AGAGTCG 120 3.3039054E-5 13.874999 22 >>END_MODULE