##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088433_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2438419 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.170054859316632 31.0 31.0 33.0 30.0 34.0 2 31.347646159253188 31.0 31.0 34.0 30.0 34.0 3 31.441474578405106 31.0 31.0 34.0 28.0 34.0 4 35.1475903033892 35.0 35.0 37.0 33.0 37.0 5 35.04183366353362 35.0 35.0 37.0 32.0 37.0 6 35.135154786769625 37.0 35.0 37.0 32.0 37.0 7 34.93351962890709 36.0 35.0 37.0 32.0 37.0 8 35.02249572366357 36.0 35.0 37.0 32.0 37.0 9 36.48819952600435 38.0 35.0 39.0 32.0 39.0 10 36.347653541085435 38.0 35.0 39.0 32.0 39.0 11 36.38615635786959 38.0 35.0 39.0 32.0 39.0 12 36.22372077973474 38.0 35.0 39.0 32.0 39.0 13 36.26312376995094 38.0 35.0 39.0 32.0 39.0 14 37.08767115085635 39.0 36.0 40.0 31.0 41.0 15 37.13297345534135 39.0 36.0 40.0 31.0 41.0 16 36.96135733850499 39.0 36.0 40.0 31.0 41.0 17 37.10726089322631 39.0 36.0 40.0 31.0 41.0 18 36.98224136212849 39.0 36.0 40.0 31.0 41.0 19 37.09212362600521 39.0 36.0 40.0 31.0 41.0 20 36.99996432114415 39.0 36.0 40.0 31.0 41.0 21 36.844076838312034 39.0 36.0 40.0 30.0 41.0 22 36.75506506469971 39.0 35.0 40.0 30.0 41.0 23 36.529233901146604 38.0 35.0 40.0 30.0 41.0 24 36.71411968164618 39.0 35.0 40.0 30.0 41.0 25 36.679035473394855 39.0 35.0 40.0 30.0 41.0 26 36.45029299722484 38.0 35.0 40.0 30.0 41.0 27 36.38535624927463 38.0 35.0 40.0 30.0 41.0 28 36.16058027763071 38.0 35.0 40.0 30.0 41.0 29 35.962615120699105 38.0 35.0 40.0 29.0 41.0 30 35.749727999986874 38.0 34.0 40.0 28.0 41.0 31 35.39005888651622 38.0 34.0 40.0 27.0 41.0 32 35.23893760670336 38.0 34.0 40.0 27.0 41.0 33 34.983101345584984 38.0 33.0 40.0 25.0 41.0 34 34.83257430326781 37.0 33.0 40.0 25.0 41.0 35 34.53820036671302 37.0 33.0 40.0 24.0 41.0 36 34.36698984054832 37.0 33.0 40.0 24.0 41.0 37 34.16988343676784 37.0 33.0 40.0 23.0 41.0 38 34.03091634374568 37.0 33.0 40.0 22.0 41.0 39 33.88501360922795 37.0 33.0 40.0 21.0 41.0 40 33.684649356816855 37.0 33.0 40.0 20.0 41.0 41 33.40542622084227 37.0 32.0 40.0 18.0 41.0 42 33.0892459417352 37.0 31.0 40.0 16.0 41.0 43 32.72559432976859 36.0 31.0 40.0 15.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 0.0 12 3.0 13 3.0 14 8.0 15 27.0 16 49.0 17 133.0 18 356.0 19 760.0 20 1530.0 21 3105.0 22 5632.0 23 9291.0 24 14959.0 25 22121.0 26 31325.0 27 42786.0 28 56145.0 29 70603.0 30 87514.0 31 103541.0 32 124861.0 33 149571.0 34 176627.0 35 210778.0 36 264776.0 37 345741.0 38 407166.0 39 309007.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.97560755555136 22.3954127654025 15.03962198457279 21.589357694473346 2 19.50312887161722 25.019982209784292 34.31551345359431 21.161375465004166 3 20.593753575574993 25.19665406150461 33.58438397994766 20.625208382972737 4 14.20965797920702 16.8383694516816 35.68316191761957 33.26881065149181 5 11.916983914577438 39.88309638335331 34.42927569051915 13.770644011550107 6 31.94414085520167 37.3530554018813 12.68059345010025 18.02221029281678 7 25.127551909659495 34.0630137806505 20.89562950419924 19.91380480549077 8 27.938799689470923 34.05173598138794 18.36796711311715 19.64149721602399 9 24.050788646249885 14.509975521024074 22.468779975877812 38.97045585684823 10 16.75630808322934 28.105629098198463 32.620029617551374 22.518033201020828 11 32.321065411645826 22.426498481188016 24.104429960560513 21.14800614660565 12 21.225269324098935 28.064413868166216 30.9475114818249 19.762805325909945 13 32.75671654461354 20.662117544195645 26.91604683198417 19.66511907920665 14 20.04483232783209 23.672264692819407 28.52249756912163 27.760405410226873 15 21.934376331549256 29.948585538416488 26.58484862527728 21.53218950475698 16 20.755128630477373 28.700030634603813 27.499621681097462 23.04521905382135 17 21.417730094786826 26.458291212461845 27.47358021734575 24.65039847540558 18 23.141346913717452 24.79524642811592 30.642600799944553 21.42080585822207 19 22.336809219416352 23.92049930713302 32.36182952970757 21.380861943743056 20 23.636954928582824 23.607878711575 32.193154662918886 20.562011696923292 21 22.299038844431575 24.705024034015484 33.02537422813717 19.970562893415774 22 20.301802110301796 25.229052103022493 32.46279659074179 22.00634919593392 23 21.85887659175884 25.60774009716952 33.54739279836648 18.985990512705158 24 21.60309610448409 25.52596579997121 30.391577493449653 22.479360602095046 25 21.462144118791727 26.063158136481057 31.636482491319168 20.83821525340805 26 21.40407370513435 26.765826545806938 31.66313910775794 20.166960641300776 27 19.788108606437206 26.94155516340711 31.403011541494713 21.867324688660972 28 20.5929743821714 26.439098448625938 31.354865591188393 21.61306157801428 29 20.8994024406798 26.137304540359963 30.608603361440345 22.354689657519895 30 20.803684682575064 26.51558243271562 32.78050244851274 19.900230436196566 31 21.870769543708445 26.180816340423856 32.34780404844286 19.600610067424835 32 21.403212491372482 26.02120472322435 30.935659540054438 21.639923245348726 33 20.913427921944503 26.224287130308614 31.621021653784688 21.241263293962195 34 19.874722104773625 27.321186391674278 32.11503027166373 20.689061231888367 35 19.32653904025518 30.055663116142057 30.689147353264556 19.928650490338207 36 22.253312494694306 26.600186432274352 30.785685314952023 20.360815758079312 37 21.096128269997898 27.73395384468379 30.524204412777294 20.64571347254102 38 20.830915441521743 25.734625591418048 32.207959337587184 21.226499629473032 39 20.303688578542083 25.53014883824314 33.09718305180529 21.06897953140949 40 18.772081418328842 26.61052099741677 32.32512541938035 22.292272164874046 41 20.945087780237934 25.250582447069185 32.29231727607109 21.512012496621786 42 19.25460718604965 27.766720977813904 31.57074317416326 21.407928661973187 43 19.588676105296095 27.843738094232368 30.387066373744627 22.180519426726907 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 160.0 1 333.0 2 506.0 3 1141.0 4 1776.0 5 1776.0 6 3156.5 7 4537.0 8 5253.5 9 5970.0 10 9187.0 11 12404.0 12 12404.0 13 24977.0 14 37550.0 15 61483.5 16 85417.0 17 76418.5 18 67420.0 19 67420.0 20 71413.5 21 75407.0 22 57331.5 23 39256.0 24 42073.5 25 44891.0 26 44891.0 27 47936.0 28 50981.0 29 54028.0 30 57075.0 31 61733.5 32 66392.0 33 66392.0 34 72738.5 35 79085.0 36 86031.5 37 92978.0 38 98041.0 39 103104.0 40 103104.0 41 107917.0 42 112730.0 43 120773.0 44 128816.0 45 143591.0 46 158366.0 47 158366.0 48 225874.5 49 293383.0 50 271201.5 51 249020.0 52 226257.5 53 203495.0 54 203495.0 55 174799.0 56 146103.0 57 119645.0 58 93187.0 59 80387.0 60 67587.0 61 67587.0 62 58603.0 63 49619.0 64 42678.0 65 35737.0 66 30696.0 67 25655.0 68 25655.0 69 22028.0 70 18401.0 71 15498.0 72 12595.0 73 10349.0 74 8103.0 75 8103.0 76 6483.5 77 4864.0 78 3809.5 79 2755.0 80 2116.5 81 1478.0 82 1478.0 83 1151.0 84 824.0 85 612.0 86 400.0 87 296.0 88 192.0 89 192.0 90 160.0 91 128.0 92 87.5 93 47.0 94 28.5 95 10.0 96 10.0 97 9.5 98 9.0 99 7.5 100 6.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2438419.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.01059451928652 #Duplication Level Percentage of deduplicated Percentage of total 1 80.29960700438544 35.340334439280674 2 10.897289135998744 9.591923470477338 3 3.449595744202874 4.5545627866070735 4 1.4954559161811247 2.6326361579406243 5 0.819526879153195 1.8033932588033794 6 0.503354985618044 1.3291771302778224 7 0.34913448792406593 1.0755931466507362 8 0.2636724024621036 0.9283503352548614 9 0.21225475156852394 0.8407312025466782 >10 1.4278382170309427 12.347075551357648 >50 0.15739696456136446 4.786481058594391 >100 0.11080328983350679 9.337608893158441 >500 0.006941309066109928 2.1122648114666607 >1k 0.0060970958013127725 5.637508704785906 >5k 5.628088431981021E-4 2.0405156764486976 >10k+ 4.690073693317517E-4 5.641843376349131 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 44032 1.8057602077411634 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 36632 1.5022848821305936 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 28964 1.1878188285114248 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15666 0.6424654663534036 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 11370 0.4662857367827268 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 9946 0.40788724169226037 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 9389 0.3850445719131946 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 9208 0.3776217294894766 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 8253 0.33845700841405846 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 7296 0.29921026698036723 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 5336 0.21883031587270277 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4958 0.2033284681590818 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 4313 0.1768769026159983 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 4120 0.16896193804264156 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 4046 0.16592718478653587 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 4025 0.16506597102466802 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3846 0.15772514895922318 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 3816 0.15649484358512628 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 3812 0.15633080286858 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 3590 0.14722654310026292 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3570 0.14640633951753165 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 3509 0.14390471859020126 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 3015 0.12364569009673891 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 3004 0.12319457812623671 No Hit GTATTGGACCCTCGCATGTGCGTTGCTGCATTTTACTCTTCTC 2941 0.1206109368406332 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 2932 0.12024184522840414 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 2615 0.10724161844211351 No Hit GGGGAGAAGAGTAAAATGCAGCAACGCACATGCGAGGGTCCAA 2489 0.10207433587090653 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 2472 0.10137716282558494 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 4.101017913656349E-5 7 0.0 0.0 0.0 0.0 4.101017913656349E-5 8 4.101017913656349E-5 0.0 0.0 0.0 4.101017913656349E-5 9 4.101017913656349E-5 0.0 0.0 8.202035827312698E-5 4.101017913656349E-5 10 8.202035827312698E-5 0.0 0.0 1.6404071654625395E-4 4.101017913656349E-5 11 2.0505089568281743E-4 0.0 0.0 4.1010179136563487E-4 4.101017913656349E-5 12 2.0505089568281743E-4 0.0 0.0 7.791934035947062E-4 4.101017913656349E-5 13 2.4606107481938094E-4 0.0 0.0 8.612137618678332E-4 4.101017913656349E-5 14 2.4606107481938094E-4 0.0 0.0 0.0011482850158237776 4.101017913656349E-5 15 2.870712539559444E-4 0.0 0.0 0.001435356269779722 4.101017913656349E-5 16 2.870712539559444E-4 0.0 0.0 0.0022145496733744284 4.101017913656349E-5 17 2.870712539559444E-4 0.0 0.0 0.0034858652266078964 4.101017913656349E-5 18 2.870712539559444E-4 0.0 0.0 0.004018997555383222 4.101017913656349E-5 19 2.870712539559444E-4 0.0 0.0 0.005618394541709198 4.101017913656349E-5 20 3.280814330925079E-4 0.0 0.0 0.009104259768317094 4.101017913656349E-5 21 3.280814330925079E-4 0.0 0.0 0.016650132729444777 4.101017913656349E-5 22 3.6909161222907136E-4 0.0 0.0 0.02739479966322441 4.101017913656349E-5 23 3.6909161222907136E-4 0.0 0.0 0.03457158101212302 4.101017913656349E-5 24 4.921221496387619E-4 0.0 0.0 0.04527523776676609 4.101017913656349E-5 25 4.921221496387619E-4 0.0 4.101017913656349E-5 0.05187787660775281 4.101017913656349E-5 26 4.921221496387619E-4 0.0 4.101017913656349E-5 0.06217143157103024 4.101017913656349E-5 27 4.921221496387619E-4 0.0 4.101017913656349E-5 0.1123268806550474 4.101017913656349E-5 28 4.921221496387619E-4 0.0 4.101017913656349E-5 0.21940445838061465 4.101017913656349E-5 29 4.921221496387619E-4 0.0 4.101017913656349E-5 0.35970028120679837 4.101017913656349E-5 30 5.741425079118888E-4 0.0 4.101017913656349E-5 0.5647921870687523 4.101017913656349E-5 31 5.741425079118888E-4 0.0 4.101017913656349E-5 0.7914144369774022 4.101017913656349E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12115 0.0 22.798595 1 GATCGGT 50 2.7033064E-4 22.2 11 TACGTTA 90 2.1542328E-6 18.5 19 AATACTG 500 0.0 17.39 5 GTATTGG 1450 0.0 17.351723 1 CAGATCG 120 1.04259016E-7 16.958332 9 GTATACT 155 4.0199666E-10 16.709679 4 ACGTTTA 90 4.449249E-5 16.444445 26 ACGTTAA 105 9.3516155E-6 15.857142 20 TGGACCC 2230 0.0 15.596413 5 TTGGACC 2210 0.0 15.570136 4 CTCTAAT 410 0.0 15.341463 1 CCGAGTT 230 0.0 15.282609 13 CCGTTTA 390 0.0 15.179487 27 ATTGGAC 1675 0.0 15.131343 3 GTATCAA 18445 0.0 14.994578 2 TACTGGT 470 0.0 14.957447 7 ACCGTTA 415 0.0 14.710843 8 CTAGGCA 340 0.0 14.691175 4 TGTTACG 240 0.0 14.645833 16 >>END_MODULE