##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088431_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3233950 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.391495539510505 31.0 31.0 34.0 30.0 34.0 2 31.582368620417757 31.0 31.0 34.0 30.0 34.0 3 31.706044311136537 31.0 31.0 34.0 30.0 34.0 4 35.40311940506192 37.0 35.0 37.0 33.0 37.0 5 35.27567649468916 37.0 35.0 37.0 33.0 37.0 6 35.32535506114813 37.0 35.0 37.0 33.0 37.0 7 35.16844447193061 37.0 35.0 37.0 32.0 37.0 8 35.200080706257054 37.0 35.0 37.0 32.0 37.0 9 36.75353236753815 39.0 35.0 39.0 32.0 39.0 10 36.598144683745886 39.0 35.0 39.0 32.0 39.0 11 36.62515221323768 39.0 35.0 39.0 32.0 39.0 12 36.47916665378253 38.0 35.0 39.0 32.0 39.0 13 36.49594644320413 38.0 35.0 39.0 32.0 39.0 14 37.47934971165293 39.0 36.0 41.0 32.0 41.0 15 37.497388333152955 39.0 36.0 41.0 32.0 41.0 16 37.36170781861191 39.0 36.0 41.0 32.0 41.0 17 37.41598076655483 39.0 36.0 41.0 32.0 41.0 18 37.281515174940864 39.0 36.0 40.0 31.0 41.0 19 37.35028772862908 39.0 36.0 41.0 31.0 41.0 20 37.24844756412437 39.0 36.0 40.0 31.0 41.0 21 37.09326705731381 39.0 36.0 40.0 31.0 41.0 22 37.001917469348626 39.0 36.0 40.0 31.0 41.0 23 36.818602328421896 39.0 36.0 40.0 30.0 41.0 24 37.03591459360844 39.0 36.0 40.0 31.0 41.0 25 37.00431330107145 39.0 36.0 40.0 31.0 41.0 26 36.8357179300855 39.0 36.0 40.0 30.0 41.0 27 36.783675072280026 39.0 35.0 40.0 30.0 41.0 28 36.60057638491628 39.0 35.0 40.0 30.0 41.0 29 36.444824440699456 39.0 35.0 40.0 30.0 41.0 30 36.30241191113035 38.0 35.0 40.0 30.0 41.0 31 36.04667975695357 38.0 35.0 40.0 29.0 41.0 32 35.91671176115896 38.0 35.0 40.0 29.0 41.0 33 35.72082994480434 38.0 34.0 40.0 27.0 41.0 34 35.62085375469627 38.0 34.0 40.0 27.0 41.0 35 35.376748249045285 38.0 34.0 40.0 26.0 41.0 36 35.22648092889501 38.0 34.0 40.0 25.0 41.0 37 35.08828584239088 38.0 34.0 40.0 25.0 41.0 38 35.01940444348243 38.0 33.0 40.0 25.0 41.0 39 34.94291222808021 38.0 33.0 40.0 24.0 41.0 40 34.83766415683607 38.0 33.0 40.0 24.0 41.0 41 34.64868782757927 38.0 33.0 40.0 23.0 41.0 42 34.44125048315527 38.0 33.0 40.0 23.0 41.0 43 34.11494580930441 38.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 2.0 13 4.0 14 5.0 15 23.0 16 65.0 17 133.0 18 295.0 19 699.0 20 1445.0 21 2953.0 22 5361.0 23 9289.0 24 14772.0 25 21961.0 26 32299.0 27 44311.0 28 59847.0 29 78133.0 30 98005.0 31 120413.0 32 146668.0 33 178472.0 34 217025.0 35 264763.0 36 333200.0 37 441486.0 38 581915.0 39 580404.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.37859274262125 21.351257749810603 13.371789916356159 23.898359591211985 2 19.197266500718936 23.31133752840953 34.688538783840194 22.80285718703134 3 19.561094018151177 24.99117178682416 32.15467153171818 23.293062663306483 4 13.959399495972418 16.475981384993585 36.49506022047341 33.06955889856059 5 12.618315063621887 38.57016960682756 35.14247282734736 13.669042502203189 6 32.5819508650412 37.568144219916825 13.785247143586016 16.06465777145596 7 26.57440591227446 32.5001932621098 21.658745496992843 19.266655328622893 8 27.080165123146614 34.486031014703386 18.953570710740735 19.48023315140927 9 24.880749547766662 14.327772538227245 21.309822353468668 39.48165556053742 10 16.42675366038436 27.37008920978988 33.712642434174924 22.49051469565083 11 33.702654648340264 22.415374387359112 23.269036317815676 20.61293464648495 12 21.156665996691356 26.929080536186394 30.763091575318107 21.15116189180414 13 31.205337126424343 20.91151687564743 25.910542834614013 21.972603163314215 14 20.89880795930673 22.477403794121738 27.29395939949597 29.329828847075557 15 23.076485412575952 29.387436416765873 24.911640563397704 22.624437607260468 16 22.486865907017734 28.1248009400269 25.99019774579075 23.398135407164613 17 22.134726881986424 26.710524281451477 26.694568561666077 24.460180274896025 18 23.14315310997387 25.750429041883766 28.778397934414567 22.328019913727797 19 23.191484098393605 24.869153821178436 29.650118276411202 22.28924380401676 20 23.90772893829527 24.716059308276257 29.525812087385393 21.850399666043074 21 22.93170890087973 25.474357983271233 29.861500641630208 21.732432474218836 22 21.832990615191946 25.90859475254719 29.501785741894587 22.756628890366272 23 22.724531919170055 25.973345289815857 30.317290001391488 20.984832789622597 24 22.760772430000465 26.11063869262048 28.060978060885294 23.06761081649376 25 22.720604833098843 26.08082994480434 29.05851976684859 22.140045455248224 26 22.566149754943645 26.684488010018708 29.072867545880428 21.676494689157224 27 21.606085437313503 26.828213175837597 28.660585352278172 22.905116034570728 28 22.020779542046103 26.443204131170862 28.910434607832524 22.62558171895051 29 22.402263485830023 26.453068229255244 28.436463148780906 22.70820513613383 30 22.235625164272793 26.49651355153914 29.778660770883903 21.489200513304162 31 22.763586326319206 26.214721934476415 29.65855996536743 21.363131773836948 32 22.19994124831862 26.064936068894077 28.856259373212325 22.878863309574978 33 22.02662378824657 26.203930178264972 29.43264428949118 22.336801743997277 34 21.62522611666847 26.638476166916618 29.74628550224957 21.99001221416534 35 21.237310409870283 28.434422300901375 28.717883702592808 21.61038358663554 36 23.135082484268466 26.432195921396435 28.62533434344996 21.807387250885142 37 22.09310595401908 26.890211660662654 28.683962337080043 22.332720048238222 38 22.024490174554337 25.78824657153017 29.813231497085606 22.374031756829883 39 21.53218200652453 25.705623154346853 30.429938619953926 22.332256219174692 40 20.71661590315249 26.30897200018553 30.115122373567928 22.859289723094047 41 21.802841726062557 25.19111303514278 30.261754201518265 22.744291037276394 42 20.64800012368775 26.95592077799595 29.77142503749285 22.624654060823453 43 21.047295103511185 26.46491133134402 29.21820065245288 23.26959291269191 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 202.0 1 366.0 2 530.0 3 1233.5 4 1937.0 5 1937.0 6 3156.5 7 4376.0 8 4809.5 9 5243.0 10 7920.0 11 10597.0 12 10597.0 13 20255.5 14 29914.0 15 47936.0 16 65958.0 17 60557.5 18 55157.0 19 55157.0 20 59573.5 21 63990.0 22 52427.5 23 40865.0 24 46632.5 25 52400.0 26 52400.0 27 58717.5 28 65035.0 29 72127.0 30 79219.0 31 89651.5 32 100084.0 33 100084.0 34 112009.5 35 123935.0 36 136485.5 37 149036.0 38 158806.5 39 168577.0 40 168577.0 41 173925.0 42 179273.0 43 190052.5 44 200832.0 45 209034.5 46 217237.0 47 217237.0 48 266371.0 49 315505.0 50 301268.0 51 287031.0 52 266863.5 53 246696.0 54 246696.0 55 222764.0 56 198832.0 57 172930.0 58 147028.0 59 132263.0 60 117498.0 61 117498.0 62 104917.5 63 92337.0 64 80609.5 65 68882.0 66 58973.5 67 49065.0 68 49065.0 69 42236.5 70 35408.0 71 29826.5 72 24245.0 73 20049.5 74 15854.0 75 15854.0 76 12720.0 77 9586.0 78 7525.5 79 5465.0 80 4192.5 81 2920.0 82 2920.0 83 2246.0 84 1572.0 85 1164.5 86 757.0 87 580.0 88 403.0 89 403.0 90 347.0 91 291.0 92 198.0 93 105.0 94 81.5 95 58.0 96 58.0 97 33.5 98 9.0 99 7.5 100 6.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3233950.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 49.995559241020096 #Duplication Level Percentage of deduplicated Percentage of total 1 80.00200135723004 39.99744798255564 2 11.449299025631236 11.448282154082003 3 3.616197049549324 5.4238138145383585 4 1.543407716787641 3.086541277508163 5 0.8179413698900304 2.044671810700907 6 0.4795055106460778 1.4383887698340942 7 0.33055134582860907 1.1568269574801202 8 0.2256908070721446 0.9026830492103233 9 0.1851073021021255 0.8329088779372997 >10 1.134345552573473 10.903606542568788 >50 0.12297181501826317 4.241018064422362 >100 0.07995442621442701 7.8401496682439324 >500 0.008498384950422455 2.937823030088408 >1k 0.003908016436848978 3.5153827619105593 >5k 3.721920416046646E-4 1.2771255845601435 >10k+ 2.481280277364431E-4 2.9533296543587504 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 32542 1.006261692357643 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 28018 0.8663708467972603 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 22727 0.7027628751217551 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11941 0.3692388565067487 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 8306 0.25683761344485845 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 7519 0.2325020485783639 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 6880 0.2127429304720234 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 6772 0.2094033612146137 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 6153 0.19026268185964534 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 5550 0.17161675350577468 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 4231 0.13083071785278066 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3532 0.10921628349232362 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 3270 0.10111473584934831 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 3262 0.10086736034879945 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 3.092193756860805E-5 0.0 9 0.0 0.0 0.0 1.236877502744322E-4 0.0 10 3.092193756860805E-5 0.0 0.0 1.5460968784304025E-4 0.0 11 3.092193756860805E-5 0.0 0.0 3.092193756860805E-4 0.0 12 6.18438751372161E-5 0.0 0.0 5.565948762349448E-4 0.0 13 6.18438751372161E-5 0.0 0.0 6.18438751372161E-4 0.0 14 6.18438751372161E-5 0.0 0.0 7.112045640779852E-4 0.0 15 6.18438751372161E-5 0.0 0.0 8.967361894896334E-4 0.0 16 6.18438751372161E-5 0.0 0.0 0.00126779944031293 0.0 17 9.276581270582414E-5 0.0 0.0 0.0017934723789792668 0.0 18 9.276581270582414E-5 0.0 0.0 0.0020717698170967394 0.0 19 1.236877502744322E-4 0.0 0.0 0.00253559888062586 0.0 20 1.236877502744322E-4 0.0 0.0 0.004390915134742343 0.0 21 1.236877502744322E-4 0.0 0.0 0.007359421141328716 0.0 22 1.236877502744322E-4 0.0 0.0 0.011688492400933842 0.0 23 1.5460968784304025E-4 3.092193756860805E-5 0.0 0.015399124909166808 0.0 24 1.855316254116483E-4 3.092193756860805E-5 0.0 0.020686776233398783 0.0 25 1.855316254116483E-4 3.092193756860805E-5 0.0 0.024428330679200357 0.0 26 1.855316254116483E-4 3.092193756860805E-5 0.0 0.03218973700892098 0.0 27 1.855316254116483E-4 3.092193756860805E-5 0.0 0.07446002566520818 0.0 28 1.855316254116483E-4 3.092193756860805E-5 0.0 0.16156712379597707 0.0 29 1.855316254116483E-4 3.092193756860805E-5 0.0 0.26840241809551785 0.0 30 2.1645356298025635E-4 3.092193756860805E-5 0.0 0.4088807804697042 0.0 31 2.1645356298025635E-4 3.092193756860805E-5 0.0 0.5793534222854404 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9690 0.0 22.700205 1 GTATTGG 1405 0.0 18.69751 1 ATTGGAC 1855 0.0 15.2587595 3 GTATTAG 855 0.0 15.146199 1 GTATCAA 14670 0.0 15.044648 2 TTGGACC 2185 0.0 14.901603 4 TGGACCC 2100 0.0 14.888095 5 TTAACGG 545 0.0 14.59633 35 CTAATAC 945 0.0 14.095239 3 ATTAGAG 745 0.0 13.90604 3 GGACCCT 2345 0.0 13.884862 6 CTAGTAC 530 0.0 13.613208 3 TGTTACG 260 1.8189894E-12 13.519231 16 TATTGGA 1985 0.0 13.327455 2 CTCTAAT 750 0.0 13.32 1 ACCGTTA 445 0.0 13.303371 8 CCGTATA 140 9.570831E-6 13.214285 2 CCGTTTA 435 0.0 13.183908 27 TAACGGC 620 0.0 13.129032 36 CGCCGTT 470 0.0 12.989362 25 >>END_MODULE