##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088429_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3350841 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.33134159454298 31.0 31.0 34.0 30.0 34.0 2 31.51705049568153 31.0 31.0 34.0 30.0 34.0 3 31.626831890859638 31.0 31.0 34.0 30.0 34.0 4 35.32717159662306 37.0 35.0 37.0 33.0 37.0 5 35.21793305024023 37.0 35.0 37.0 33.0 37.0 6 35.278919530947604 37.0 35.0 37.0 32.0 37.0 7 35.10540309134334 37.0 35.0 37.0 32.0 37.0 8 35.15971632196216 37.0 35.0 37.0 32.0 37.0 9 36.67868752948887 39.0 35.0 39.0 32.0 39.0 10 36.53234844625573 38.0 35.0 39.0 32.0 39.0 11 36.56246446787538 38.0 35.0 39.0 32.0 39.0 12 36.40770809477382 38.0 35.0 39.0 32.0 39.0 13 36.42739688334958 38.0 35.0 39.0 32.0 39.0 14 37.3554916512004 39.0 36.0 41.0 32.0 41.0 15 37.37985419182826 39.0 36.0 41.0 32.0 41.0 16 37.23766540996723 39.0 36.0 40.0 32.0 41.0 17 37.32772101093427 39.0 36.0 40.0 32.0 41.0 18 37.202896228140936 39.0 36.0 40.0 31.0 41.0 19 37.30046307777659 39.0 36.0 40.0 31.0 41.0 20 37.19769693638104 39.0 36.0 40.0 31.0 41.0 21 37.0464355067877 39.0 36.0 40.0 31.0 41.0 22 36.9551670759669 39.0 36.0 40.0 31.0 41.0 23 36.75011944762524 39.0 35.0 40.0 30.0 41.0 24 36.94308891409649 39.0 36.0 40.0 31.0 41.0 25 36.90731849108925 39.0 36.0 40.0 30.0 41.0 26 36.719645306954284 39.0 35.0 40.0 30.0 41.0 27 36.66437560003593 39.0 35.0 40.0 30.0 41.0 28 36.465127411297644 39.0 35.0 40.0 30.0 41.0 29 36.29236660289163 38.0 35.0 40.0 30.0 41.0 30 36.10719547719513 38.0 35.0 40.0 29.0 41.0 31 35.79791879113333 38.0 34.0 40.0 28.0 41.0 32 35.65949204990628 38.0 34.0 40.0 27.0 41.0 33 35.44462091755473 38.0 34.0 40.0 27.0 41.0 34 35.31641549091706 38.0 34.0 40.0 26.0 41.0 35 35.05393183382918 38.0 33.0 40.0 25.0 41.0 36 34.900489757645914 38.0 33.0 40.0 25.0 41.0 37 34.73786282309426 38.0 33.0 40.0 24.0 41.0 38 34.640404006039084 38.0 33.0 40.0 24.0 41.0 39 34.53493824386177 38.0 33.0 40.0 23.0 41.0 40 34.38089064804925 38.0 33.0 40.0 23.0 41.0 41 34.15451076311887 38.0 33.0 40.0 22.0 41.0 42 33.8864717842476 37.0 33.0 40.0 20.0 41.0 43 33.546662464736464 37.0 32.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 4.0 14 14.0 15 21.0 16 67.0 17 138.0 18 341.0 19 810.0 20 1756.0 21 3405.0 22 6224.0 23 10571.0 24 16932.0 25 25596.0 26 36424.0 27 50964.0 28 67051.0 29 86484.0 30 107199.0 31 130913.0 32 158526.0 33 192586.0 34 231935.0 35 279599.0 36 352868.0 37 466666.0 38 583676.0 39 540070.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.3380103681434 21.703148552855836 14.038624930278697 22.920216148722066 2 19.262268785657096 23.8918826646803 34.78258144746349 22.06326710219912 3 19.899123831897725 24.95319831648234 32.88944476923853 22.25823308238141 4 13.850224466037034 16.466403508850462 36.283488234744645 33.39988379036785 5 12.267785908075018 39.01623502875845 34.948808373778405 13.767170689388127 6 32.29437027898369 37.60775279996872 13.083043928374996 17.014832992672584 7 25.94286031476874 33.24875755071638 21.19641009525668 19.611972039258205 8 27.394286986461008 34.23892688432546 18.581544155631377 19.785241973582153 9 24.42476381302485 14.344577973111825 21.73523005120207 39.495428162661256 10 16.606398214657155 27.602921177101507 33.161137756163306 22.62954285207803 11 33.21079693127785 22.36838453391253 23.537434333649372 20.883384201160247 12 21.383974948378633 27.443379139744323 30.652513801759024 20.520132110118027 13 31.81998190901926 20.85586872071817 26.333806945778687 20.99034242448388 14 20.577252098801466 23.004881461101856 27.748556257966285 28.6693101821304 15 22.66174372344137 29.47451102573951 25.863596631412832 22.000148619406293 16 21.81052458173933 28.43426471145602 26.575447775647966 23.179762931156684 17 21.85564758220399 26.61806394275348 26.842485214905746 24.683803260136784 18 23.070178501456798 25.325821189367087 29.71585342306603 21.888146886110086 19 22.90314580727644 24.263461023665403 30.860939089619592 21.972454079438563 20 23.860487561182403 24.051514231800315 30.817666370920016 21.270331836097267 21 22.700420580982506 25.0628125894365 31.277491232797978 20.959275596783016 22 21.23317698452418 25.571580388326392 30.755413342501182 22.43982928464824 23 22.420968347946083 25.786511505619035 31.844871183085083 19.9476489633498 24 22.353612123046123 25.767680412171153 28.918949004145528 22.959758460637193 25 22.18986218683608 26.013409767876183 30.26974422242058 21.526983822867155 26 22.02065093509361 26.78100811109808 30.222562037410906 20.975778916397406 27 20.790273247820473 26.859764459131302 29.77900174911313 22.57096054393509 28 21.316200917918813 26.357860608724792 30.072599684676177 22.253338788680217 29 21.846993038464074 26.246396054005544 29.322579018222587 22.584031889307788 30 21.634359851750652 26.41796492283579 31.159222416103898 20.788452809309664 31 22.4219233320829 26.22273035336502 30.887798018467606 20.467548296084477 32 21.86379479062122 25.976046013523174 29.78097140389532 22.379187791960288 33 21.490694425668064 26.147525352590588 30.514936399548652 21.846843822192696 34 20.785587856899205 26.806494250249415 30.957004525132646 21.45091336771873 35 20.276700684992218 29.08771260707387 29.582424233199966 21.053162474733956 36 22.82080826873015 26.49561707046082 29.503548512149635 21.180026148659394 37 21.555752719988803 27.265125381956352 29.465528206202563 21.713593691852285 38 21.415190992350873 25.671406073878174 31.024987458372387 21.888415475398563 39 20.9373109616362 25.543468042798807 31.646473228661105 21.872747766903892 40 19.658079867113955 26.448464728705424 31.17396498371603 22.719490420464595 41 21.398090807650973 25.084090829734983 31.253855375411728 22.26396298720232 42 19.88823104408714 27.24715974288246 30.684684829868086 22.179924383162316 43 20.372527374471066 26.928195041185184 29.82636299364846 22.87291459069529 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 197.0 1 379.0 2 561.0 3 1366.0 4 2171.0 5 2171.0 6 3613.5 7 5056.0 8 5735.0 9 6414.0 10 9882.0 11 13350.0 12 13350.0 13 26571.5 14 39793.0 15 64543.0 16 89293.0 17 80934.0 18 72575.0 19 72575.0 20 76891.0 21 81207.0 22 63228.0 23 45249.0 24 50080.5 25 54912.0 26 54912.0 27 59566.5 28 64221.0 29 70750.0 30 77279.0 31 86444.0 32 95609.0 33 95609.0 34 108182.0 35 120755.0 36 132641.0 37 144527.0 38 154878.5 39 165230.0 40 165230.0 41 170188.5 42 175147.0 43 188074.5 44 201002.0 45 212634.0 46 224266.0 47 224266.0 48 293579.5 49 362893.0 50 342409.5 51 321926.0 52 294492.5 53 267059.0 54 267059.0 55 235398.5 56 203738.0 57 172204.5 58 140671.0 59 123383.5 60 106096.0 61 106096.0 62 94143.0 63 82190.0 64 71441.0 65 60692.0 66 51829.0 67 42966.0 68 42966.0 69 36966.0 70 30966.0 71 25843.5 72 20721.0 73 17150.5 74 13580.0 75 13580.0 76 10852.5 77 8125.0 78 6462.0 79 4799.0 80 3744.5 81 2690.0 82 2690.0 83 2031.5 84 1373.0 85 1070.0 86 767.0 87 572.5 88 378.0 89 378.0 90 307.5 91 237.0 92 166.0 93 95.0 94 72.0 95 49.0 96 49.0 97 30.0 98 11.0 99 8.0 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3350841.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 45.55562867252425 #Duplication Level Percentage of deduplicated Percentage of total 1 79.61670959916731 36.26989258627864 2 11.583249385510088 10.553644156550847 3 3.707099173616131 5.06637700216434 4 1.5773453000061217 2.8742782710172103 5 0.8032633991208639 1.829658456828986 6 0.5066941119119579 1.384966128768936 7 0.32858751862719016 1.0478307689504494 8 0.23586226590945977 0.8595883042905221 9 0.18218101740995182 0.7469433702279398 >10 1.1992828808257854 10.74804338803412 >50 0.14333520883736903 4.533492917608775 >100 0.09856390854331913 9.020416116982636 >500 0.010524711742878744 3.3100710087647043 >1k 0.006577944839186993 5.818365266498955 >5k 2.6311779356747974E-4 0.983432105415848 >10k+ 4.6045613874308954E-4 4.953000151616913 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 45382 1.3543465655338465 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 38677 1.1542475456161603 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 31926 0.9527757360017977 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16539 0.49357758246362626 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 11809 0.3524189897401876 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 10916 0.325768963672105 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 10037 0.29953674316388035 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 9395 0.28037737391896544 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 9033 0.26957411587120966 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 8249 0.24617700451916397 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 6141 0.18326742450626574 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4882 0.1456947673733251 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 4712 0.14062141414647847 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 4551 0.13581665020811193 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 4527 0.13510041210549828 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 4089 0.12202906673279931 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 3991 0.11910442781379361 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 3944 0.1177017948628419 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 3940 0.11758242184573962 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3906 0.1165677512003703 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 3889 0.11606041587768562 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3703 0.11050957058242991 No Hit GTATTGGACCCTCGCATGTGCGTTGCTGCATTTTACTCTTCTC 3444 0.10278016772505769 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 3394 0.10128800501127927 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 2.984325427556843E-5 0.0 0.0 2.984325427556843E-5 0.0 3 2.984325427556843E-5 0.0 0.0 2.984325427556843E-5 0.0 4 2.984325427556843E-5 0.0 0.0 2.984325427556843E-5 0.0 5 5.968650855113686E-5 0.0 0.0 2.984325427556843E-5 0.0 6 5.968650855113686E-5 0.0 0.0 2.984325427556843E-5 0.0 7 5.968650855113686E-5 0.0 0.0 5.968650855113686E-5 0.0 8 8.95297628267053E-5 0.0 0.0 5.968650855113686E-5 0.0 9 8.95297628267053E-5 0.0 0.0 2.3874603420454745E-4 0.0 10 1.4921627137784216E-4 0.0 0.0 3.581190513068212E-4 0.0 11 1.790595256534106E-4 0.0 0.0 4.1780555985795805E-4 0.0 12 1.790595256534106E-4 0.0 0.0 6.863948483380739E-4 0.0 13 1.790595256534106E-4 0.0 0.0 7.759246111647793E-4 0.0 14 2.3874603420454745E-4 0.0 0.0 8.356111197159161E-4 0.0 15 2.3874603420454745E-4 0.0 0.0 0.001104200408196032 0.0 16 2.685892884801159E-4 0.0 0.0 0.0014623194595028532 0.0 17 2.685892884801159E-4 0.0 0.0 0.0019696547821875165 0.0 18 2.685892884801159E-4 0.0 0.0 0.0024471468505966112 0.0 19 2.685892884801159E-4 0.0 0.0 0.0032230714617613905 0.0 20 2.984325427556843E-4 0.0 0.0 0.0059089643465625495 0.0 21 2.984325427556843E-4 0.0 0.0 0.010803258047755773 0.0 22 2.984325427556843E-4 0.0 0.0 0.017070341445625144 0.0 23 2.984325427556843E-4 0.0 0.0 0.021546829586960407 0.0 24 2.984325427556843E-4 0.0 0.0 0.028440621324616715 0.0 25 3.2827579703125273E-4 0.0 0.0 0.033155855500156525 0.0 26 3.2827579703125273E-4 0.0 0.0 0.04243710757985831 0.0 27 3.581190513068212E-4 0.0 0.0 0.09111145530331043 0.0 28 3.581190513068212E-4 0.0 0.0 0.1920114980090073 0.0 29 3.581190513068212E-4 0.0 0.0 0.3214416918021476 0.0 30 3.8796230558238963E-4 0.0 0.0 0.5015457313552031 0.0 31 4.1780555985795805E-4 0.0 0.0 0.7109558466068667 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12165 0.0 23.632551 1 GTATTGG 1595 0.0 18.094046 1 TCTAGAC 245 0.0 17.367348 3 GTATTAG 875 0.0 16.068571 1 TAATACT 1000 0.0 15.725001 4 TGGACCC 2335 0.0 15.608138 5 GTATCAA 18935 0.0 15.212306 2 TTGGACC 2445 0.0 15.208588 4 ATTGGAC 1835 0.0 15.122616 3 GTCAACC 740 0.0 15.0 15 TATTACC 805 0.0 14.937888 2 CTAATAC 1085 0.0 14.834102 3 TATACTG 350 0.0 14.8 5 ATTAGAG 780 0.0 14.705129 3 ATTACCC 825 0.0 14.575756 3 TCTAATA 1060 0.0 14.311321 2 TACCCTC 920 0.0 14.277173 5 GGACCCT 2555 0.0 14.119373 6 TCGGGTA 295 0.0 13.79661 25 ATACTGG 1050 0.0 13.566667 6 >>END_MODULE