##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088421_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1396936 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.212213014769468 31.0 31.0 34.0 30.0 34.0 2 31.461238023789207 31.0 31.0 34.0 30.0 34.0 3 31.555167165854414 31.0 31.0 34.0 30.0 34.0 4 35.358860391599904 37.0 35.0 37.0 33.0 37.0 5 35.14547767399509 37.0 35.0 37.0 32.0 37.0 6 35.18222667323342 37.0 35.0 37.0 32.0 37.0 7 35.06775256704674 37.0 35.0 37.0 32.0 37.0 8 35.078292062055816 37.0 35.0 37.0 32.0 37.0 9 36.59440804732643 39.0 35.0 39.0 32.0 39.0 10 36.43363403906836 38.0 35.0 39.0 32.0 39.0 11 36.558324790827925 38.0 35.0 39.0 32.0 39.0 12 36.42456920002061 38.0 35.0 39.0 32.0 39.0 13 36.46905155282705 38.0 35.0 39.0 32.0 39.0 14 37.471564194780576 39.0 36.0 41.0 32.0 41.0 15 37.466523162120524 39.0 36.0 41.0 32.0 41.0 16 37.42878485485377 39.0 36.0 41.0 32.0 41.0 17 37.43899505775497 39.0 36.0 41.0 32.0 41.0 18 37.408601396198534 39.0 36.0 41.0 32.0 41.0 19 37.47699679870803 39.0 36.0 41.0 32.0 41.0 20 37.434894655159574 39.0 36.0 41.0 32.0 41.0 21 37.385606785135465 39.0 36.0 41.0 31.0 41.0 22 37.27722315123957 39.0 36.0 41.0 31.0 41.0 23 37.18468992137077 39.0 36.0 41.0 31.0 41.0 24 37.11103085610221 39.0 36.0 41.0 31.0 41.0 25 37.04766288505701 39.0 36.0 40.0 31.0 41.0 26 36.812377947164364 39.0 35.0 40.0 30.0 41.0 27 36.67155689308601 39.0 35.0 40.0 30.0 41.0 28 36.58180689738113 39.0 35.0 40.0 30.0 41.0 29 36.44384567367438 38.0 35.0 40.0 30.0 41.0 30 36.282738078193994 38.0 35.0 40.0 30.0 41.0 31 36.09001700865323 38.0 35.0 40.0 29.0 41.0 32 35.92799526964728 38.0 34.0 40.0 29.0 41.0 33 36.036424002244914 38.0 35.0 40.0 30.0 41.0 34 36.01189961458506 38.0 35.0 40.0 29.0 41.0 35 35.9763224657393 38.0 35.0 40.0 29.0 41.0 36 35.905546138119426 38.0 35.0 40.0 29.0 41.0 37 35.803932320449896 38.0 35.0 40.0 28.0 41.0 38 35.698938247707844 38.0 34.0 40.0 27.0 41.0 39 35.67056114238591 38.0 34.0 40.0 27.0 41.0 40 35.560939799675864 38.0 34.0 40.0 27.0 41.0 41 35.45096482587606 38.0 34.0 40.0 26.0 41.0 42 35.35958984520408 38.0 34.0 40.0 26.0 41.0 43 35.01620618267408 38.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 0.0 12 0.0 13 1.0 14 2.0 15 10.0 16 12.0 17 37.0 18 106.0 19 234.0 20 453.0 21 933.0 22 1688.0 23 2930.0 24 4849.0 25 7734.0 26 11744.0 27 17046.0 28 23723.0 29 32186.0 30 40711.0 31 51053.0 32 62513.0 33 76208.0 34 92831.0 35 112836.0 36 140946.0 37 186108.0 38 254425.0 39 275616.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.54280224720388 22.552214274669705 13.36102727684017 23.543956201286242 2 17.994883086984657 24.049777513071465 34.970320759147164 22.985018640796714 3 19.567109731583983 26.344012896796993 31.80532250582704 22.28355486579199 4 13.730765045785919 17.324487306505095 36.81084888642 32.13389876128899 5 12.583396805580213 39.40230619011895 34.735807510150785 13.278489494150053 6 30.756885068464122 38.210555100591584 16.412562923426698 14.619996907517596 7 24.981029911177032 34.079585607357814 23.218601281662153 17.720783199802998 8 26.15109067272946 34.42111879141206 21.176918627625028 18.25087190823345 9 25.78328570528643 14.163927338117135 22.648782764564736 37.40400419203171 10 15.781539025409897 27.993050504819116 34.768378794733614 21.457031675037367 11 32.53513403620495 23.35869359798874 23.9896459107647 20.116526455041605 12 19.65537433354141 27.73319608056489 32.01685689251333 20.59457269338037 13 28.95744686943425 21.852898056890222 27.698477238756823 21.491177834918705 14 20.793436492437735 23.088387728571675 28.356918284015876 27.761257494974718 15 23.19583717507459 29.880395379602216 25.28913278775835 21.634634657564842 16 21.876163260163672 28.744623948412812 27.050058127215564 22.329154664207955 17 20.3571244495095 28.280536832038116 28.447831539884433 22.914507178567952 18 20.726361121769358 27.418221020862806 30.512421470990798 21.34299638637704 19 20.95872681354049 27.038962414885148 31.37359191831265 20.62871885326171 20 22.569824243916685 26.36799395247885 30.49194809211016 20.5702337114943 21 22.49644937205427 26.93867149246637 29.786976640304207 20.777902495175155 22 21.900359071568058 26.81976840742883 30.39716923323617 20.88270328776694 23 21.260888115131973 27.285430399102033 30.42823722776133 21.02544425800466 24 20.802957329469642 27.46088582440427 30.05449068532846 21.68166616079763 25 21.433122204596344 27.61729957564269 30.255859967815272 20.693718251945686 26 21.58967912631645 27.51743816466896 29.72240675306528 21.170475955949307 27 21.308134374087288 27.861548417393493 29.670077942010227 21.160239266508988 28 20.95299999427318 27.990759777112196 29.82541791463603 21.230822313978592 29 20.483329229112858 27.712507945961733 30.472906418046353 21.331256406879056 30 20.576175286484133 28.10314860523317 30.671913387585402 20.6487627206973 31 21.089513048557702 27.963342629869942 30.084126975036796 20.86301734653556 32 21.074265392258486 27.956184105785802 29.747604757841444 21.22194574411426 33 21.285155511777205 27.88452727970358 29.69434533865546 21.13597186986376 34 21.17835033244186 28.213962558055634 29.709807750677196 20.897879358825314 35 20.89293997720726 28.378966538195023 29.941099663835708 20.78699382076201 36 20.83187776676956 27.68351592342097 30.247484494636833 21.237121815172635 37 20.895087534432502 27.30175183401387 30.226295263347787 21.576865368205844 38 20.815699502339406 27.1552884312524 30.584078297073024 21.444933769335172 39 21.112563496108628 26.917840187381525 30.6603165785691 21.309279737940752 40 20.44925465447236 26.903308383490725 30.84092614121191 21.806510820825007 41 20.437514674974373 26.59406014305595 30.91322723446171 22.055197947507974 42 19.674988689531947 27.296311355709925 30.884521552884316 22.144178401873816 43 19.736408826173854 26.691416070600226 30.966916165092744 22.605258938133172 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 233.0 1 280.0 2 327.0 3 758.5 4 1190.0 5 1190.0 6 1879.5 7 2569.0 8 2708.5 9 2848.0 10 4258.0 11 5668.0 12 5668.0 13 9263.5 14 12859.0 15 19244.0 16 25629.0 17 25319.0 18 25009.0 19 25009.0 20 28313.0 21 31617.0 22 28804.0 23 25991.0 24 29944.5 25 33898.0 26 33898.0 27 37507.0 28 41116.0 29 44127.5 30 47139.0 31 51804.5 32 56470.0 33 56470.0 34 61362.0 35 66254.0 36 71665.5 37 77077.0 38 80014.0 39 82951.0 40 82951.0 41 85974.5 42 88998.0 43 92350.0 44 95702.0 45 101887.0 46 108072.0 47 108072.0 48 107964.0 49 107856.0 50 100064.5 51 92273.0 52 87172.5 53 82072.0 54 82072.0 55 75885.5 56 69699.0 57 63992.0 58 58285.0 59 52427.0 60 46569.0 61 46569.0 62 41098.0 63 35627.0 64 30792.5 65 25958.0 66 21526.0 67 17094.0 68 17094.0 69 14492.5 70 11891.0 71 9957.5 72 8024.0 73 6190.5 74 4357.0 75 4357.0 76 3276.0 77 2195.0 78 1790.0 79 1385.0 80 1112.0 81 839.0 82 839.0 83 656.5 84 474.0 85 375.5 86 277.0 87 254.0 88 231.0 89 231.0 90 196.0 91 161.0 92 97.0 93 33.0 94 23.5 95 14.0 96 14.0 97 9.0 98 4.0 99 2.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1396936.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 55.27148345651038 #Duplication Level Percentage of deduplicated Percentage of total 1 78.69626351963232 43.49659227214539 2 12.478349174446604 13.793937399199713 3 3.9316982645331358 6.519323867524015 4 1.6531400526211364 3.654860122789754 5 0.8256130564180508 2.281642919464464 6 0.5074724284498844 1.6829252360221763 7 0.32130421787740554 1.2431272534042623 8 0.2188019240179217 0.9674805538887362 9 0.18068066502883395 0.8987839549247243 >10 1.0025603989079326 10.673497036007772 >50 0.1168001501996942 4.56265639825374 >100 0.06367746262092773 6.213995539964604 >500 0.0019492956675277702 0.7281818775487675 >1k 0.0012995304450185135 1.1305565942609588 >5k 1.2995304450185135E-4 0.6312154606331198 >10k+ 2.599060890037027E-4 1.5212235139677792 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 10720 0.7673937818196396 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 10459 0.7487100339600382 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 8788 0.6290910965140851 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3889 0.2783950016321435 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 2251 0.161138377133956 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1517 0.10859481035637997 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 1428 0.10222372392149676 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 1.4317048168276857E-4 0.0 10 0.0 0.0 0.0 1.4317048168276857E-4 0.0 11 0.0 0.0 0.0 2.1475572252415285E-4 0.0 12 0.0 0.0 0.0 5.0109668588969E-4 0.0 13 0.0 0.0 0.0 5.0109668588969E-4 0.0 14 0.0 0.0 0.0 5.726819267310743E-4 0.0 15 0.0 0.0 0.0 7.158524084138429E-4 0.0 16 0.0 0.0 0.0 0.0010737786126207643 0.0 17 0.0 0.0 0.0 0.0014317048168276858 0.0 18 0.0 0.0 0.0 0.0019328015027173758 0.0 19 0.0 0.0 0.0 0.0023623129477656816 0.0 20 0.0 0.0 0.0 0.0028634096336553716 0.0 21 0.0 0.0 0.0 0.003794017764593367 0.0 22 0.0 0.0 0.0 0.005440478303945206 0.0 23 0.0 0.0 0.0 0.008375473178441962 0.0 24 0.0 0.0 0.0 0.014460218649959626 0.0 25 0.0 0.0 0.0 0.018970088822966837 0.0 26 0.0 0.0 0.0 0.028634096336553713 0.0 27 0.0 0.0 0.0 0.08647497093639221 0.0 28 0.0 0.0 0.0 0.14574755035305842 0.0 29 0.0 0.0 0.0 0.21117646048208363 0.0 30 0.0 0.0 0.0 0.3257128458282985 0.0 31 0.0 0.0 0.0 0.5294444412628782 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 3125 0.0 23.7984 1 CCCGTAT 65 6.903492E-5 19.923077 1 TAGCCCG 80 1.6170763E-5 18.5 5 CCGTATA 90 2.1528904E-6 18.5 2 CGGGCGA 70 1.2194361E-4 18.5 28 ATGACGG 95 3.6075107E-6 17.526316 20 TGCGGTC 85 2.723795E-5 17.411764 12 GTCCTAT 195 1.8189894E-12 16.128206 1 GTACGGT 70 0.0025928689 15.857142 11 CGGACCA 215 0.0 15.488372 9 TTGCGTG 120 1.9361287E-6 15.416666 7 AAGACCG 110 1.4522342E-5 15.136364 5 GTATCAA 4910 0.0 15.071283 2 GTAGACC 75 0.004104995 14.8 3 ACGGACC 215 1.2732926E-11 14.627907 8 CGCAAGA 215 1.2732926E-11 14.627907 2 CGTATAC 115 2.2104074E-5 14.478261 3 ACGCCTA 90 8.275586E-4 14.388889 6 GTATACC 90 8.275586E-4 14.388889 4 TATACCG 90 8.275586E-4 14.388889 5 >>END_MODULE