##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088420_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3212305 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.28331525182073 31.0 31.0 34.0 30.0 34.0 2 31.511730050540034 31.0 31.0 34.0 30.0 34.0 3 31.59955577070048 31.0 31.0 34.0 30.0 34.0 4 35.40751423043578 37.0 35.0 37.0 33.0 37.0 5 35.22346321410949 37.0 35.0 37.0 33.0 37.0 6 35.26369258211783 37.0 35.0 37.0 32.0 37.0 7 35.123050582058674 37.0 35.0 37.0 32.0 37.0 8 35.156689666765764 37.0 35.0 37.0 32.0 37.0 9 36.63885683333307 39.0 35.0 39.0 32.0 39.0 10 36.526295915238435 39.0 35.0 39.0 32.0 39.0 11 36.64206667797734 39.0 35.0 39.0 32.0 39.0 12 36.50323303671351 38.0 35.0 39.0 32.0 39.0 13 36.54035062050459 39.0 35.0 39.0 32.0 39.0 14 37.51388333299609 39.0 36.0 41.0 32.0 41.0 15 37.50319723687508 39.0 36.0 41.0 32.0 41.0 16 37.46000582136503 39.0 36.0 41.0 32.0 41.0 17 37.52937688046434 39.0 36.0 41.0 32.0 41.0 18 37.51145330222379 39.0 36.0 41.0 32.0 41.0 19 37.59335088044255 39.0 36.0 41.0 32.0 41.0 20 37.55987273935694 39.0 36.0 41.0 32.0 41.0 21 37.49113175741407 39.0 36.0 41.0 32.0 41.0 22 37.396824398679456 39.0 36.0 41.0 32.0 41.0 23 37.27408854389605 39.0 36.0 41.0 31.0 41.0 24 37.20687450288811 39.0 36.0 41.0 31.0 41.0 25 37.14947615497283 39.0 36.0 41.0 31.0 41.0 26 36.91050320564205 39.0 36.0 40.0 31.0 41.0 27 36.75136545253331 39.0 35.0 40.0 30.0 41.0 28 36.636273330209924 39.0 35.0 40.0 30.0 41.0 29 36.49358544721002 38.0 35.0 40.0 30.0 41.0 30 36.31426312258643 38.0 35.0 40.0 30.0 41.0 31 36.062441766893244 38.0 35.0 40.0 30.0 41.0 32 35.9181615693404 38.0 35.0 40.0 29.0 41.0 33 35.954477236750556 38.0 35.0 40.0 30.0 41.0 34 35.89824752008293 38.0 35.0 40.0 29.0 41.0 35 35.82275001906731 38.0 35.0 40.0 29.0 41.0 36 35.737471068282744 38.0 35.0 40.0 28.0 41.0 37 35.61385298095916 38.0 34.0 40.0 27.0 41.0 38 35.480300594121665 38.0 34.0 40.0 27.0 41.0 39 35.40170127058296 38.0 34.0 40.0 26.0 41.0 40 35.22792418528129 38.0 34.0 40.0 25.0 41.0 41 35.07654347890378 38.0 34.0 40.0 24.0 41.0 42 34.91781166483258 38.0 34.0 40.0 24.0 41.0 43 34.571161206672464 38.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 0.0 13 3.0 14 4.0 15 12.0 16 32.0 17 90.0 18 220.0 19 544.0 20 1024.0 21 2205.0 22 4064.0 23 6855.0 24 11422.0 25 18260.0 26 27319.0 27 40185.0 28 55855.0 29 75137.0 30 95835.0 31 117509.0 32 143240.0 33 175222.0 34 211269.0 35 256261.0 36 323487.0 37 438017.0 38 563208.0 39 645024.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.43890446268334 22.40658966069536 13.62750423761131 22.527001639009995 2 17.82937797002464 23.138649661224573 36.2434762577028 22.788496111047984 3 19.76509079928587 26.34478980047038 32.18508205167318 21.705037348570574 4 12.850585483009864 15.999850574587407 35.959910407013034 35.189653535389695 5 11.714454262593371 40.13940145783168 34.526266964064746 13.619877315510202 6 31.239530492901512 36.66588322092703 15.864776227662066 16.22981005850939 7 24.738684527154177 35.01379850294415 21.921486284770594 18.32603068513108 8 27.574654336994776 33.38857922893374 20.554368280720542 18.482398153350942 9 25.67380743733861 13.676378799646983 23.430931994315607 37.2188817686988 10 16.33092125436408 27.557812847783758 33.773941141952584 22.33732475589958 11 31.736401120067985 22.258004766048057 24.896017034497035 21.10957707938692 12 20.239578744857663 27.48649334356482 31.830445739118794 20.44348217245872 13 30.498691749382452 21.060671387056956 28.601487094158244 19.839149769402344 14 21.00712728087775 22.6698274292136 28.435438104414118 27.887607185494527 15 23.027389989431267 29.07379591912972 26.656279525138494 21.242534566300524 16 21.950655370520543 28.483472148503957 27.112307206196174 22.453565274779326 17 19.631510706486463 27.19221867163921 28.186333489503646 24.98993713237068 18 20.765120373065447 26.328477526262294 32.04832666885616 20.858075431816093 19 20.119945023900286 25.08983424674805 33.16634005799573 21.623880671355927 20 23.959493261069543 24.20065965093601 31.899959686268893 19.939887401725553 21 23.603860779097875 25.149635542079597 30.809963561990532 20.436540116831996 22 22.028574497129007 24.79008064302736 31.797229715111115 21.384115144732522 23 21.046911796980673 26.250869702596734 32.643195462448304 20.05902303797429 24 19.944774857929122 25.674305522047252 31.414576137695516 22.96634348232811 25 21.02337729449725 26.45290531254037 32.07712219107463 20.44659520188774 26 22.243591439791675 25.799449305094008 30.844113494826924 21.112845760287392 27 21.04411007049455 26.856229405364683 30.69966892932022 21.39999159482054 28 20.76938522338321 26.496985809255346 30.823193937063888 21.91043503029756 29 19.77651561729039 26.53589867711814 31.765072121109295 21.92251358448217 30 19.51530131790101 26.867062747777688 33.13228351604222 20.48535241827909 31 20.705630380676805 26.37535974946339 32.06392294629558 20.85508692356423 32 21.5586004442293 26.321473210046992 30.503112251171665 21.61681409455204 33 22.091084128063805 26.29177490929411 30.251766255072294 21.3653747075698 34 20.911899710643915 28.56406848042138 30.180010926733296 20.34402088220141 35 19.8753231713676 29.34403800386327 30.47724297661648 20.30339584815265 36 20.51097265047995 26.520675963210216 32.03478499083991 20.933566395469917 37 20.755843545366957 26.60248637660496 31.30085717265328 21.3408129053748 38 20.81116207832071 26.093848498196774 31.86484471430951 21.230144709173008 39 21.64031746674117 25.758855401339538 31.76678428729526 20.834042844624033 40 20.210938874110646 26.31098230087118 31.164568744250627 22.31351008076755 41 20.90486426413432 25.920826322531642 31.16067745746434 22.013631955869695 42 18.997822435914397 27.418442520246366 31.50276826141976 22.080966782419477 43 19.371821791517306 27.00537464530921 31.19289731205474 22.429906251118744 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 307.0 1 411.0 2 515.0 3 1556.0 4 2597.0 5 2597.0 6 4275.0 7 5953.0 8 6535.0 9 7117.0 10 10615.5 11 14114.0 12 14114.0 13 24948.0 14 35782.0 15 57884.5 16 79987.0 17 78529.0 18 77071.0 19 77071.0 20 82994.0 21 88917.0 22 74079.0 23 59241.0 24 66029.0 25 72817.0 26 72817.0 27 78564.5 28 84312.0 29 88722.5 30 93133.0 31 99027.5 32 104922.0 33 104922.0 34 113031.5 35 121141.0 36 133592.0 37 146043.0 38 149725.5 39 153408.0 40 153408.0 41 160525.5 42 167643.0 43 185740.5 44 203838.0 45 248048.0 46 292258.0 47 292258.0 48 296518.0 49 300778.0 50 275518.5 51 250259.0 52 237072.5 53 223886.0 54 223886.0 55 196985.5 56 170085.0 57 145332.0 58 120579.0 59 107626.0 60 94673.0 61 94673.0 62 83807.0 63 72941.0 64 64256.0 65 55571.0 66 47521.0 67 39471.0 68 39471.0 69 33710.5 70 27950.0 71 23502.0 72 19054.0 73 14939.5 74 10825.0 75 10825.0 76 8359.0 77 5893.0 78 4749.0 79 3605.0 80 2948.0 81 2291.0 82 2291.0 83 1763.5 84 1236.0 85 1053.5 86 871.0 87 769.0 88 667.0 89 667.0 90 541.5 91 416.0 92 252.0 93 88.0 94 63.0 95 38.0 96 38.0 97 24.0 98 10.0 99 6.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3212305.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.45115611948499 #Duplication Level Percentage of deduplicated Percentage of total 1 73.77763749810896 30.581683700608846 2 13.911310719072723 11.532798248858969 3 5.166665364632986 6.424927579396132 4 2.3716582241788324 3.932319012499893 5 1.267620601145181 2.6272169719172154 6 0.7626132366445615 1.8966720198563682 7 0.5024947946001345 1.4580293126139101 8 0.3278469473416 1.087170799804259 9 0.2414026646186115 0.9005777584889167 >10 1.379087682716262 10.894494561509088 >50 0.15508237071632344 4.505866851275528 >100 0.1190260816794139 9.671929628707165 >500 0.010396679858965144 2.8675643316025616 >1k 0.006027060787768623 4.814197847620008 >5k 6.7804433862397E-4 2.088317582161684 >10k+ 4.520295590826467E-4 4.716233793079375 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 38530 1.1994502390028343 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 37743 1.1749506973964179 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 34155 1.0632552014830472 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 17577 0.547177182739497 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12873 0.40074027839822185 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 10145 0.31581683557445506 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 9240 0.28764391924179056 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 9224 0.2871458345331468 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 9042 0.2814801209723236 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 7575 0.23581197924854586 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 7483 0.23294799217384402 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 6546 0.20377890642389188 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 6243 0.19434642725395004 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 5819 0.18114718247488953 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 5700 0.1774426774543513 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 4968 0.15465530203389777 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4804 0.1495499337702989 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 4596 0.14307483255792958 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 3866 0.12034971772605652 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 3662 0.11399913769084816 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 3592 0.11182001709053158 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 3363 0.10469117969806728 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3266 0.10167154115191428 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 3.113029429023707E-5 0.0 4 0.0 0.0 0.0 3.113029429023707E-5 0.0 5 3.113029429023707E-5 0.0 0.0 3.113029429023707E-5 0.0 6 3.113029429023707E-5 0.0 0.0 3.113029429023707E-5 0.0 7 3.113029429023707E-5 0.0 0.0 3.113029429023707E-5 0.0 8 3.113029429023707E-5 0.0 0.0 3.113029429023707E-5 0.0 9 3.113029429023707E-5 0.0 0.0 1.245211771609483E-4 0.0 10 3.113029429023707E-5 0.0 0.0 1.5565147145118536E-4 0.0 11 3.113029429023707E-5 0.0 0.0 2.8017264861213365E-4 0.0 12 3.113029429023707E-5 0.0 0.0 4.35824120063319E-4 0.0 13 3.113029429023707E-5 0.0 0.0 4.669544143535561E-4 0.0 14 3.113029429023707E-5 0.0 0.0 6.537361800949786E-4 0.0 15 6.226058858047414E-5 0.0 0.0 9.339088287071122E-4 0.0 16 1.245211771609483E-4 0.0 0.0 0.0014942541259313795 0.0 17 1.245211771609483E-4 0.0 0.0 0.0024592932489287287 0.0 18 1.245211771609483E-4 0.0 0.0 0.0027705961918310994 0.0 19 1.245211771609483E-4 0.0 0.0 0.003517723254796789 0.0 20 1.245211771609483E-4 0.0 0.0 0.004545022966374612 0.0 21 1.245211771609483E-4 0.0 0.0 0.006039277092305992 0.0 22 1.245211771609483E-4 0.0 0.0 0.010522039470100131 0.0 23 1.245211771609483E-4 0.0 0.0 0.017059401271049917 0.0 24 1.245211771609483E-4 0.0 0.0 0.027581440741150046 0.0 25 1.245211771609483E-4 0.0 0.0 0.032998111947651294 0.0 26 1.245211771609483E-4 0.0 0.0 0.04183911552607863 0.0 27 1.245211771609483E-4 0.0 0.0 0.1036950102807797 0.0 28 1.245211771609483E-4 0.0 0.0 0.1711232277134332 0.0 29 1.245211771609483E-4 0.0 0.0 0.2507856508021499 0.0 30 1.245211771609483E-4 0.0 0.0 0.3883815515649977 0.0 31 1.245211771609483E-4 0.0 0.0 0.5897634253285413 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9310 0.0 27.581097 1 ATTGGAC 1245 0.0 22.289156 3 GTATTGG 1240 0.0 22.080645 1 CCCGTAT 130 6.9849193E-10 18.5 1 ACGAACG 140 9.458745E-11 18.5 15 GGACCCT 1950 0.0 17.45641 6 TTGGACC 2010 0.0 17.395523 4 TGCGACG 150 2.5283953E-10 17.266666 22 TGGACCC 2105 0.0 16.61045 5 TATTGGA 1805 0.0 16.501385 2 GTATCAA 15955 0.0 16.105608 2 ACGTTTA 230 0.0 15.282609 26 CGTATAC 210 9.094947E-12 14.97619 3 CGCAAGA 410 0.0 14.8902445 2 GACCCTC 2200 0.0 14.884091 7 ACGGACC 390 0.0 14.705129 8 CGTCTGT 840 0.0 14.535714 34 CGACGAG 180 3.3378456E-9 14.388888 24 CGTTTAG 310 0.0 14.32258 26 ATCACGT 235 3.6379788E-12 14.170214 23 >>END_MODULE