##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088419_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2368273 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.200596806195907 31.0 31.0 34.0 30.0 34.0 2 31.42481546679796 31.0 31.0 34.0 30.0 34.0 3 31.510094908821745 31.0 31.0 34.0 30.0 34.0 4 35.32546670084066 37.0 35.0 37.0 33.0 37.0 5 35.14014727187279 37.0 35.0 37.0 32.0 37.0 6 35.189470555126036 37.0 35.0 37.0 32.0 37.0 7 35.05379531836068 37.0 35.0 37.0 32.0 37.0 8 35.093900492046316 37.0 35.0 37.0 32.0 37.0 9 36.563510203426716 39.0 35.0 39.0 32.0 39.0 10 36.4393475752162 38.0 35.0 39.0 32.0 39.0 11 36.55882535501608 39.0 35.0 39.0 32.0 39.0 12 36.41434243433928 38.0 35.0 39.0 32.0 39.0 13 36.46063101677889 38.0 35.0 39.0 32.0 39.0 14 37.42791730514176 39.0 36.0 41.0 32.0 41.0 15 37.41309046718854 39.0 36.0 41.0 32.0 41.0 16 37.359934433234685 39.0 36.0 41.0 32.0 41.0 17 37.43235978284598 39.0 36.0 41.0 32.0 41.0 18 37.41047294800895 39.0 36.0 41.0 32.0 41.0 19 37.492380734822376 39.0 36.0 41.0 32.0 41.0 20 37.45937271589889 39.0 36.0 41.0 32.0 41.0 21 37.39940918973446 39.0 36.0 41.0 32.0 41.0 22 37.303004341138035 39.0 36.0 41.0 31.0 41.0 23 37.19310569347368 39.0 36.0 41.0 31.0 41.0 24 37.13282336960308 39.0 36.0 41.0 31.0 41.0 25 37.0640808724332 39.0 36.0 41.0 31.0 41.0 26 36.813058714092506 39.0 35.0 40.0 30.0 41.0 27 36.65899370553986 39.0 35.0 40.0 30.0 41.0 28 36.538202310291084 38.0 35.0 40.0 30.0 41.0 29 36.39688583199656 38.0 35.0 40.0 30.0 41.0 30 36.20830199896718 38.0 35.0 40.0 30.0 41.0 31 35.949909913257464 38.0 35.0 40.0 29.0 41.0 32 35.81409237870803 38.0 34.0 40.0 29.0 41.0 33 35.8508888122273 38.0 35.0 40.0 29.0 41.0 34 35.78557961856593 38.0 35.0 40.0 29.0 41.0 35 35.69589021198147 38.0 34.0 40.0 28.0 41.0 36 35.60834667287091 38.0 34.0 40.0 27.0 41.0 37 35.48017141604874 38.0 34.0 40.0 27.0 41.0 38 35.35464703604694 38.0 34.0 40.0 26.0 41.0 39 35.27548639873866 38.0 34.0 40.0 25.0 41.0 40 35.097207543218204 38.0 34.0 40.0 25.0 41.0 41 34.94599144608751 38.0 34.0 40.0 24.0 41.0 42 34.79257036667648 38.0 33.0 40.0 24.0 41.0 43 34.44632692261408 38.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 3.0 14 3.0 15 11.0 16 29.0 17 75.0 18 181.0 19 414.0 20 866.0 21 1703.0 22 3191.0 23 5554.0 24 8983.0 25 14337.0 26 21532.0 27 31172.0 28 43084.0 29 58445.0 30 73021.0 31 89167.0 32 108636.0 33 130906.0 34 159471.0 35 192072.0 36 240277.0 37 321334.0 38 414532.0 39 449273.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.331848144196215 22.450114492712622 13.779534707358485 22.438502655732677 2 18.10441617161535 23.26682776858918 36.003239491393096 22.625516568402375 3 20.186101855656 26.346582509702216 31.69026543814839 21.777050196493395 4 13.287868417196835 16.288704891708008 35.323968140497314 35.09945855059784 5 11.908677758011851 40.19114350414838 34.15370609722781 13.746472640611957 6 31.46710704382476 36.20756559737834 15.875450169807282 16.449877188989614 7 24.882182079515324 34.71174987005299 21.960939469393942 18.445128581037743 8 27.450931543787394 33.70282902351207 20.48154921328749 18.36469021941305 9 25.758770209346643 13.739125514668283 23.16616369818851 37.33594057779656 10 16.496240087185896 27.631738401780538 33.57454989353001 22.297471617503557 11 31.959237807465605 22.19794761837001 24.585045727414027 21.257768846750352 12 20.364628571114903 27.42960798860604 31.77995104449529 20.425812395783762 13 30.77491488523494 21.10217023121912 28.28905282456879 19.833862058977154 14 21.049980302101996 22.411563193939212 28.51297126640383 28.02548523755496 15 23.222533888618415 28.83953834714157 26.653008331387472 21.284919432852547 16 21.822610822316516 28.256835255057165 27.233811304693333 22.686742617932985 17 19.81355190047769 27.112752626069714 28.183195096173456 24.89050037727914 18 20.769733894698795 26.237008993473303 31.898307331967217 21.094949779860684 19 20.279672149283464 25.041623157465377 33.16682662851791 21.511878064733246 20 23.846026197148724 24.190327719819464 32.10187339044105 19.861772692590762 21 23.41799277363716 24.990995548232824 30.95770631173011 20.633305366399902 22 22.127220974946724 24.608058277065187 31.86098055418442 21.40374019380367 23 21.034061529224036 26.19512193062202 32.73845540611239 20.032361134041558 24 20.128211570203266 25.52488670013972 31.4272045494755 22.919697180181508 25 21.116906707968212 26.296419373948865 32.06678453033075 20.519889387752173 26 22.25685130050463 25.532191601221648 31.02813738112118 21.18281971715254 27 21.12704067478707 26.71410770633284 30.71563117934461 21.443220439535477 28 20.85338134581613 26.261583863009037 30.985954744237677 21.899080046937154 29 20.061622963231013 26.164593355580205 31.88593544747586 21.88784823371292 30 19.708749793625987 26.4742282667581 33.11923920933102 20.697782730284896 31 20.708718969476912 25.996876204728085 32.28301804732816 21.01138677846684 32 21.53307494532936 26.16294658597214 30.716602351164752 21.587376117533747 33 22.312503668284865 25.965883156207077 30.379225705820232 21.342387469687825 34 20.99994384093388 28.122095721228085 30.38467271298537 20.493287724852667 35 20.037808141206696 28.842451862601987 30.581905042197416 20.5378349539939 36 20.7034830866205 26.04315465320088 32.0996776976303 21.15368456254832 37 20.724637742354872 26.264159579575498 31.397182672774633 21.614020005294996 38 20.922883468248806 25.81518262463829 31.97004737207239 21.291886535040515 39 21.690278105606914 25.34192637419757 31.88445757731478 21.08333794288074 40 20.352510035794015 26.027447004631643 31.229465521922517 22.390577437651825 41 20.908991488734618 25.733055268543787 31.15054725532065 22.207405987400946 42 19.027747223398652 27.022180297626157 31.554723631946146 22.395348847029037 43 19.648199341883306 26.807551325375073 31.020156882251328 22.524092450490294 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 424.0 1 476.5 2 529.0 3 1337.5 4 2146.0 5 2146.0 6 3536.0 7 4926.0 8 5278.0 9 5630.0 10 8251.5 11 10873.0 12 10873.0 13 19133.5 14 27394.0 15 44037.0 16 60680.0 17 59375.0 18 58070.0 19 58070.0 20 62037.5 21 66005.0 22 53847.0 23 41689.0 24 45120.0 25 48551.0 26 48551.0 27 53538.5 28 58526.0 29 61940.5 30 65355.0 31 70010.0 32 74665.0 33 74665.0 34 80638.0 35 86611.0 36 93992.0 37 101373.0 38 106731.0 39 112089.0 40 112089.0 41 117573.0 42 123057.0 43 137608.0 44 152159.0 45 184594.5 46 217030.0 47 217030.0 48 220802.0 49 224574.0 50 205556.5 51 186539.0 52 176190.0 53 165841.0 54 165841.0 55 145957.0 56 126073.0 57 108750.5 58 91428.0 59 81459.0 60 71490.0 61 71490.0 62 63120.5 63 54751.0 64 48075.5 65 41400.0 66 36060.0 67 30720.0 68 30720.0 69 26128.5 70 21537.0 71 18634.0 72 15731.0 73 12400.0 74 9069.0 75 9069.0 76 7080.0 77 5091.0 78 3888.0 79 2685.0 80 2183.0 81 1681.0 82 1681.0 83 1255.0 84 829.0 85 643.0 86 457.0 87 403.5 88 350.0 89 350.0 90 269.0 91 188.0 92 112.5 93 37.0 94 26.0 95 15.0 96 15.0 97 10.0 98 5.0 99 2.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2368273.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 45.17361137682731 #Duplication Level Percentage of deduplicated Percentage of total 1 75.61575952587246 34.1583693478539 2 13.197555671954698 11.923625020978491 3 4.591625181520032 6.222608746141202 4 2.0811248396282105 3.7604769892810737 5 1.0990157191988017 2.4823254498055523 6 0.7024155344489209 1.9038387826945207 7 0.47155326871609704 1.4911234873117512 8 0.31665779887233314 1.1443661076560259 9 0.23921391877906856 0.9725540942568219 >10 1.446894252224211 12.48381582765255 >50 0.143122450371216 4.524762403946929 >100 0.0840140975641678 6.925993013428347 >500 0.004681246122853027 1.48036613930854 >1k 0.005336620580052439 4.420501357476402 >5k 6.553744571994223E-4 1.9889908805040257 >10k+ 3.7449968982824133E-4 4.116282351703981 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 30045 1.268645971135929 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 28507 1.20370413377174 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 25804 1.0895703324743389 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 12970 0.5476564568358463 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9715 0.41021453185506906 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 6699 0.2828643488314059 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 6658 0.2811331294998507 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 6491 0.2740815775883946 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 6439 0.2718858847776418 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 5587 0.2359103025706918 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 5439 0.22966102303239533 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 4894 0.20664847338123601 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 4316 0.1822425032924836 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3762 0.15884992988561705 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 3729 0.15745650944802395 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 3664 0.15471189343458294 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 3491 0.14740699235265528 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 3365 0.14208665977275423 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 2903 0.12257877364645038 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 2568 0.10843344496179283 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2429 0.10256418917920357 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 2424 0.10235306487047734 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 4.222486174524643E-5 0.0 0.0 0.0 0.0 7 4.222486174524643E-5 0.0 0.0 0.0 0.0 8 4.222486174524643E-5 0.0 0.0 0.0 0.0 9 4.222486174524643E-5 0.0 0.0 4.222486174524643E-5 0.0 10 4.222486174524643E-5 0.0 0.0 8.444972349049286E-5 0.0 11 4.222486174524643E-5 0.0 0.0 3.800237557072179E-4 0.0 12 4.222486174524643E-5 0.0 0.0 7.178226496691893E-4 0.0 13 4.222486174524643E-5 0.0 0.0 8.444972349049286E-4 0.0 14 4.222486174524643E-5 0.0 0.0 9.711718201406679E-4 0.0 15 4.222486174524643E-5 0.0 0.0 0.0013511955758478858 0.0 16 8.444972349049286E-5 0.0 0.0 0.0024912668429695395 0.0 17 8.444972349049286E-5 0.0 0.0 0.0036735629718364395 0.0 18 8.444972349049286E-5 0.0 0.0 0.004053586727543657 0.0 19 8.444972349049286E-5 0.0 0.0 0.004771409377212847 0.0 20 8.444972349049286E-5 0.0 0.0 0.006375954123532211 0.0 21 8.444972349049286E-5 0.0 0.0 0.009500593892680447 0.0 22 8.444972349049286E-5 0.0 0.0 0.016003222601448396 0.0 23 8.444972349049286E-5 0.0 0.0 0.026221639143798034 0.0 24 8.444972349049286E-5 0.0 0.0 0.03926912142307918 0.0 25 8.444972349049286E-5 0.0 0.0 0.045729525270101885 0.0 26 8.444972349049286E-5 0.0 0.0 0.056243515844668246 0.0 27 8.444972349049286E-5 0.0 0.0 0.12705460899144652 0.0 28 8.444972349049286E-5 0.0 0.0 0.20812634354231965 0.0 29 8.444972349049286E-5 0.0 0.0 0.29988096811474013 0.0 30 8.444972349049286E-5 0.0 0.0 0.46628914825275636 0.0 31 8.444972349049286E-5 0.0 0.0 0.7106444231724974 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7315 0.0 27.010254 1 ATTGGAC 610 0.0 21.836065 3 GTATTGG 675 0.0 20.82963 1 CGCGAAT 45 0.0038269882 20.555557 35 TTGGACC 1105 0.0 18.75113 4 GGACCCT 1210 0.0 17.429752 6 TGGACCC 1245 0.0 17.236946 5 GACCCTC 1315 0.0 16.460075 7 TATACGT 80 3.3844615E-4 16.1875 4 CGTCTGT 615 0.0 15.9430895 34 GTATCAA 12470 0.0 15.888932 2 TATACTG 345 0.0 15.550725 5 TATACCG 120 1.937513E-6 15.416666 5 ACCCTCG 1370 0.0 15.124088 8 GTATAGA 185 3.0559022E-10 15.0 1 CAATGCG 210 9.094947E-12 14.97619 19 CGACGAG 235 0.0 14.957446 24 GTACTAG 350 0.0 14.8 1 TGCGACG 200 6.184564E-11 14.799999 22 ACGTTTA 165 1.6474587E-8 14.575757 26 >>END_MODULE