##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088418_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3378256 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.259025958956336 31.0 31.0 34.0 30.0 34.0 2 31.48526458622437 31.0 31.0 34.0 30.0 34.0 3 31.57691424214151 31.0 31.0 34.0 30.0 34.0 4 35.386777970645205 37.0 35.0 37.0 33.0 37.0 5 35.19527472163151 37.0 35.0 37.0 32.0 37.0 6 35.234835370676464 37.0 35.0 37.0 32.0 37.0 7 35.10845004049427 37.0 35.0 37.0 32.0 37.0 8 35.1347650977309 37.0 35.0 37.0 32.0 37.0 9 36.62520010324854 39.0 35.0 39.0 32.0 39.0 10 36.50169288532308 38.0 35.0 39.0 32.0 39.0 11 36.623408646354804 39.0 35.0 39.0 32.0 39.0 12 36.47957733220928 38.0 35.0 39.0 32.0 39.0 13 36.52169048171601 38.0 35.0 39.0 32.0 39.0 14 37.50523406159865 39.0 36.0 41.0 32.0 41.0 15 37.493295653141736 39.0 36.0 41.0 32.0 41.0 16 37.45455228970214 39.0 36.0 41.0 32.0 41.0 17 37.5036237632672 39.0 36.0 41.0 32.0 41.0 18 37.4839878919774 39.0 36.0 41.0 32.0 41.0 19 37.56392913976916 39.0 36.0 41.0 32.0 41.0 20 37.526131530588565 39.0 36.0 41.0 32.0 41.0 21 37.46395625435136 39.0 36.0 41.0 32.0 41.0 22 37.365375211351655 39.0 36.0 41.0 31.0 41.0 23 37.25116243410801 39.0 36.0 41.0 31.0 41.0 24 37.18356009728097 39.0 36.0 41.0 31.0 41.0 25 37.12480581696591 39.0 36.0 41.0 31.0 41.0 26 36.886956761121716 39.0 36.0 40.0 31.0 41.0 27 36.733898496739144 39.0 35.0 40.0 30.0 41.0 28 36.62339384581867 39.0 35.0 40.0 30.0 41.0 29 36.4775842920134 38.0 35.0 40.0 30.0 41.0 30 36.301066585836004 38.0 35.0 40.0 30.0 41.0 31 36.0647775065004 38.0 35.0 40.0 30.0 41.0 32 35.922540802118014 38.0 35.0 40.0 29.0 41.0 33 35.977382116689796 38.0 35.0 40.0 30.0 41.0 34 35.93176656831217 38.0 35.0 40.0 29.0 41.0 35 35.868168664541706 38.0 35.0 40.0 29.0 41.0 36 35.789013621229415 38.0 35.0 40.0 28.0 41.0 37 35.666789609786825 38.0 34.0 40.0 27.0 41.0 38 35.54461503213492 38.0 34.0 40.0 27.0 41.0 39 35.4761951136918 38.0 34.0 40.0 26.0 41.0 40 35.32253209940277 38.0 34.0 40.0 26.0 41.0 41 35.18748312738881 38.0 34.0 40.0 25.0 41.0 42 35.047398716971124 38.0 34.0 40.0 24.0 41.0 43 34.70301392197631 38.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 3.0 14 3.0 15 17.0 16 37.0 17 92.0 18 234.0 19 515.0 20 1107.0 21 2237.0 22 4103.0 23 7313.0 24 11962.0 25 18898.0 26 28586.0 27 41865.0 28 58419.0 29 78482.0 30 100456.0 31 123675.0 32 150853.0 33 182863.0 34 223269.0 35 270940.0 36 340986.0 37 457156.0 38 602109.0 39 672074.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.091734907005275 22.401262663338716 13.502173902747453 23.004828526908558 2 18.03116756101373 23.23545048095822 35.66124059277923 23.072141365248815 3 19.82484453516844 26.16867993426194 32.00189683671101 22.004578693858605 4 13.171352319066406 16.3046850209102 36.016068646070636 34.507894013952765 5 11.953653009126603 39.94934072491842 34.51638952169404 13.580616744260945 6 31.154003722630847 36.946371145348365 15.996182645720157 15.903442486300623 7 24.86256222145391 34.73138210958554 22.18017225455975 18.225883414400805 8 27.40141658891452 33.382224437698035 20.631414552360745 18.58494442102671 9 25.817285605353767 13.610602630469687 23.122137576311562 37.44997418786498 10 16.072050193946225 27.62694715853387 34.11147645412307 22.18952619339683 11 32.162186643048955 22.199176142956603 24.775298260404185 20.863338953590254 12 20.321846538569012 27.280437006550123 31.810821915213054 20.586894539667806 13 30.34133588455108 21.145999592689247 28.247208026863564 20.26545649589611 14 20.97327733599822 22.492256359494366 28.49878754007985 28.035678764427562 15 23.13010026475199 29.163598022174753 26.304341648471873 21.40196006460138 16 21.991939035999643 28.378399979160847 27.020806001676608 22.60885498316291 17 19.965242420941458 27.227687895766334 28.065723852780845 24.741345830511364 18 20.84362463945894 26.50000473617156 31.586682595990357 21.06968802837914 19 20.35710141564168 25.458609412667364 32.642020024533366 21.542269147157587 20 23.726887482772177 24.636528433605978 31.474879346029432 20.161704737592416 21 23.376558792465698 25.404261843981036 30.54055110092308 20.678628262630188 22 22.1876317247716 25.077377202911798 31.34087529186657 21.394115780450033 23 21.267452792209944 26.430767828133806 31.958176052969346 20.343603326686907 24 20.274928839022266 25.990333473839755 30.871224679242783 22.863513007895197 25 21.235986852387743 26.571136112834555 31.55681511407069 20.636061920707014 26 22.229073225948536 25.948980775879626 30.54436963924581 21.277576358926027 27 21.244807971923976 27.045611700238233 30.263248255904823 21.446332071932975 28 20.898268218867962 26.64889812968585 30.43999625842447 22.012837393021726 29 20.082906683211693 26.620865914246878 31.38228719197124 21.91394021057019 30 19.829403100297903 26.911933257870334 32.49540591358382 20.763257728247947 31 20.811477874974543 26.497133432161448 31.649999289574264 21.041389403289745 32 21.708597572238457 26.427304502678307 30.183976584367795 21.68012134071545 33 22.20160343088268 26.511608356501103 29.829474142871355 21.45731406974486 34 21.163671432833983 28.329735816350208 29.879884768945868 20.626707981869934 35 20.102354587692584 28.93925149544617 30.242231494593657 20.716162422267583 36 20.7642641647051 26.498998299714412 31.516616857929066 21.220120677651426 37 20.911795908895 26.43227748281954 30.934778181404845 21.721148426880614 38 20.871124035597067 26.16788070531067 31.47727703288324 21.483718226209024 39 21.700753288087107 25.777916179235678 31.426570396086028 21.094760136591187 40 20.331970105285095 26.195113691798372 31.033468156350498 22.43944804656604 41 20.91194391425635 25.80434993677211 31.025683074343686 22.258023074627857 42 19.22486040134318 27.00633107733695 31.345404255923764 22.423404265396112 43 19.56266783807977 26.63827134474119 31.093617535201595 22.70544328197745 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 383.0 1 500.5 2 618.0 3 1637.0 4 2656.0 5 2656.0 6 4466.5 7 6277.0 8 6710.0 9 7143.0 10 10673.0 11 14203.0 12 14203.0 13 24587.0 14 34971.0 15 56440.5 16 77910.0 17 76474.0 18 75038.0 19 75038.0 20 81101.0 21 87164.0 22 73454.5 23 59745.0 24 66861.0 25 73977.0 26 73977.0 27 80339.5 28 86702.0 29 91615.0 30 96528.0 31 104110.5 32 111693.0 33 111693.0 34 122415.5 35 133138.0 36 145121.0 37 157104.0 38 162917.0 39 168730.0 40 168730.0 41 177895.5 42 187061.0 43 204057.0 44 221053.0 45 261115.5 46 301178.0 47 301178.0 48 305503.5 49 309829.0 50 283566.0 51 257303.0 52 243383.0 53 229463.0 54 229463.0 55 203560.5 56 177658.0 57 154986.5 58 132315.0 59 118328.0 60 104341.0 61 104341.0 62 93061.0 63 81781.0 64 71982.0 65 62183.0 66 52826.5 67 43470.0 68 43470.0 69 36460.0 70 29450.0 71 24903.0 72 20356.0 73 15960.0 74 11564.0 75 11564.0 76 8972.0 77 6380.0 78 5062.5 79 3745.0 80 3030.5 81 2316.0 82 2316.0 83 1749.5 84 1183.0 85 949.0 86 715.0 87 618.5 88 522.0 89 522.0 90 410.0 91 298.0 92 188.0 93 78.0 94 52.0 95 26.0 96 26.0 97 16.5 98 7.0 99 4.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3378256.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.89300421409602 #Duplication Level Percentage of deduplicated Percentage of total 1 72.4214329452219 30.339513955650528 2 14.151807147011496 11.857234328936533 3 5.545634364337957 6.969698513851371 4 2.568015486227967 4.303275343456482 5 1.4347891422159527 3.005381379059606 6 0.8757289247433613 2.201214932080765 7 0.5810191113292221 1.7038445255569796 8 0.3874980499477513 1.2986765951532107 9 0.2787439162486186 1.0509678052251303 >10 1.4811070941483298 11.60354605360176 >50 0.14802075879136783 4.31573000892775 >100 0.11205520319880241 9.056144809761017 >500 0.007993538966376081 2.2604840952239176 >1k 0.005163967650496283 4.186124463442042 >5k 6.366535459515966E-4 1.8989690386522624 >10k+ 3.5369641441755363E-4 3.9491941514205555 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 36588 1.083044032187022 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 35852 1.0612576429968599 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 32349 0.9575650868377056 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 16241 0.48075101472475734 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12232 0.3620803159973667 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 8781 0.25992701559621295 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 8542 0.25285235932386413 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 8169 0.24181115936743694 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 7888 0.23349325805977994 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 6922 0.2048986222476923 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 6610 0.19566308769968882 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 6088 0.18021132797514458 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 6069 0.17964890760202898 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 5010 0.14830137206890182 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 4883 0.1445420358907081 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4835 0.14312118442178448 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 4380 0.12965269653927944 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 4356 0.12894227080481765 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 3841 0.11369771858615807 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 3425 0.10138367252215344 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 2.960107226924188E-5 0.0 5 0.0 0.0 0.0 2.960107226924188E-5 0.0 6 2.960107226924188E-5 0.0 0.0 2.960107226924188E-5 0.0 7 2.960107226924188E-5 0.0 0.0 2.960107226924188E-5 0.0 8 2.960107226924188E-5 0.0 0.0 8.880321680772565E-5 0.0 9 2.960107226924188E-5 0.0 0.0 8.880321680772565E-5 0.0 10 2.960107226924188E-5 0.0 0.0 1.1840428907696752E-4 0.0 11 2.960107226924188E-5 0.0 0.0 3.256117949616607E-4 0.0 12 2.960107226924188E-5 0.0 0.0 5.328193008463538E-4 0.0 13 2.960107226924188E-5 0.0 0.0 5.624203731155957E-4 0.0 14 2.960107226924188E-5 0.0 0.0 6.216225176540795E-4 0.0 15 2.960107226924188E-5 0.0 0.0 7.400268067310471E-4 0.0 16 2.960107226924188E-5 0.0 0.0 0.0013024471798466428 0.0 17 2.960107226924188E-5 0.0 0.0 0.0020424739865776897 0.0 18 2.960107226924188E-5 0.0 0.0 0.002486490070616318 0.0 19 2.960107226924188E-5 0.0 0.0 0.003019309371462672 0.0 20 2.960107226924188E-5 0.0 0.0 0.0035521286723090256 0.0 21 2.960107226924188E-5 0.0 0.0 0.004795373707617185 0.0 22 2.960107226924188E-5 0.0 0.0 0.007992289512695308 0.0 23 2.960107226924188E-5 0.0 0.0 0.013320482521158847 0.0 24 2.960107226924188E-5 0.0 0.0 0.02172718704562354 0.0 25 2.960107226924188E-5 0.0 0.0 0.02675936933139466 0.0 26 2.960107226924188E-5 0.0 0.0 0.03605410602393661 0.0 27 2.960107226924188E-5 0.0 0.0 0.10218290147342297 0.0 28 2.960107226924188E-5 0.0 0.0 0.16739406368256285 0.0 29 2.960107226924188E-5 0.0 0.0 0.240597515404398 0.0 30 2.960107226924188E-5 0.0 0.0 0.3745127663504483 0.0 31 2.960107226924188E-5 0.0 0.0 0.5848283848234118 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8230 0.0 28.233292 1 ATTGGAC 815 0.0 18.159512 3 GTATTGG 875 0.0 17.971428 1 TTGGACC 1470 0.0 16.612246 4 GTATCAA 14220 0.0 16.340364 2 GGACCCT 1425 0.0 16.098246 6 TCGACGG 130 2.593115E-7 15.653846 19 ACGACGC 145 5.3552867E-8 15.310345 27 ACGTGCG 135 3.9784754E-7 15.074075 9 TGGACCC 1480 0.0 15.0 5 CCCGTAT 150 8.115603E-8 14.8 1 CGCGATA 125 2.9626754E-6 14.799999 14 AAGACCG 230 1.8189894E-12 14.478261 5 CGCATAC 90 8.2798715E-4 14.388888 37 CGAATTA 285 0.0 14.280702 15 CGTCTGT 810 0.0 14.160494 34 ATAAGAC 290 0.0 14.034483 3 CCGATAA 185 4.9094524E-9 14.0 9 GACCCTC 1600 0.0 13.875001 7 AATGCGT 315 0.0 13.5079365 35 >>END_MODULE