##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088417_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 623388 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.48172085442774 31.0 31.0 34.0 30.0 34.0 2 31.693771776165086 31.0 31.0 34.0 30.0 34.0 3 31.785953531348053 31.0 31.0 34.0 30.0 34.0 4 35.55339210892735 37.0 35.0 37.0 33.0 37.0 5 35.385795042573804 37.0 35.0 37.0 33.0 37.0 6 35.417011556205765 37.0 35.0 37.0 33.0 37.0 7 35.298932606979925 37.0 35.0 37.0 32.0 37.0 8 35.321700128972644 37.0 35.0 37.0 32.0 37.0 9 36.86353442799669 39.0 37.0 39.0 33.0 39.0 10 36.7330715381111 39.0 35.0 39.0 32.0 39.0 11 36.833537058782014 39.0 37.0 39.0 32.0 39.0 12 36.6984510449351 39.0 35.0 39.0 32.0 39.0 13 36.72589462742305 39.0 35.0 39.0 32.0 39.0 14 37.75862705088966 40.0 37.0 41.0 32.0 41.0 15 37.75883077633833 40.0 37.0 41.0 32.0 41.0 16 37.7249048746527 40.0 37.0 41.0 32.0 41.0 17 37.77474061098385 40.0 37.0 41.0 32.0 41.0 18 37.75028874473041 40.0 37.0 41.0 32.0 41.0 19 37.8201665736267 40.0 37.0 41.0 32.0 41.0 20 37.781915917534505 40.0 37.0 41.0 32.0 41.0 21 37.739629251766154 40.0 37.0 41.0 32.0 41.0 22 37.62446662431744 39.0 36.0 41.0 32.0 41.0 23 37.515348386558614 39.0 36.0 41.0 32.0 41.0 24 37.44988033135062 39.0 36.0 41.0 32.0 41.0 25 37.39592998261115 39.0 36.0 41.0 32.0 41.0 26 37.190505752436685 39.0 36.0 41.0 31.0 41.0 27 37.03009522159554 39.0 36.0 41.0 31.0 41.0 28 36.932526773053056 39.0 35.0 40.0 31.0 41.0 29 36.78574178521242 39.0 35.0 40.0 30.0 41.0 30 36.602664793034194 38.0 35.0 40.0 30.0 41.0 31 36.400532252786384 38.0 35.0 40.0 30.0 41.0 32 36.24209801921115 38.0 35.0 40.0 30.0 41.0 33 36.32300750094644 38.0 35.0 40.0 30.0 41.0 34 36.28445205874993 38.0 35.0 40.0 30.0 41.0 35 36.23426180805534 38.0 35.0 40.0 30.0 41.0 36 36.159205823660386 38.0 35.0 40.0 30.0 41.0 37 36.03156781972062 38.0 35.0 40.0 29.0 41.0 38 35.934762940576334 38.0 35.0 40.0 29.0 41.0 39 35.889154106270894 38.0 35.0 40.0 28.0 41.0 40 35.75761965260801 38.0 35.0 40.0 27.0 41.0 41 35.63361983227139 38.0 35.0 40.0 27.0 41.0 42 35.49834132193754 38.0 35.0 40.0 26.0 41.0 43 35.164189878534714 38.0 34.0 40.0 25.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 2.0 15 2.0 16 6.0 17 12.0 18 30.0 19 61.0 20 193.0 21 297.0 22 580.0 23 976.0 24 1838.0 25 2777.0 26 4382.0 27 6374.0 28 9179.0 29 12522.0 30 16455.0 31 20367.0 32 25413.0 33 31567.0 34 38856.0 35 48032.0 36 61852.0 37 84569.0 38 115733.0 39 141313.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.21478116357709 22.17158495190796 13.48052898034611 23.13310490416883 2 17.762132091089338 22.977824404704613 36.21564739776832 23.044396106437723 3 19.389208646942194 26.23662951484469 31.77234723799624 22.60181460021688 4 12.904483243180811 16.36204097608552 36.63865842781703 34.09481735291664 5 12.025095125347296 39.743947589623154 34.81138552554749 13.419571759482057 6 31.077114092667806 37.2244894030684 16.173875660102535 15.52452084416126 7 25.048605362952124 34.265818398814226 22.606627012390355 18.078949225843292 8 26.80144629027187 33.94563257553883 20.81608885637837 18.43683227781093 9 25.690581146894072 14.04133541229539 22.955687308706615 37.31239613210392 10 16.172752763928724 27.46908827247236 34.3542063690671 22.003952594531818 11 32.21332460682593 22.75260351498585 24.391550687533286 20.642521190654936 12 20.164809075567707 27.49042329977478 31.865868447900823 20.47889917675669 13 30.066026295020116 21.418763274236913 27.851514626524732 20.66369580421824 14 20.859721393417903 22.65266575551663 28.44376215134074 28.043850699724732 15 22.965151719314456 29.38523038621212 26.061297297990976 21.588320596482447 16 21.940589167581027 28.46365345499111 27.00581339390556 22.5899439835223 17 20.04016760027463 27.63094573524033 28.060694142331904 24.268192522153136 18 20.80662444577053 26.911490115305398 31.061874787451792 21.220010651472275 19 20.451147599889634 26.096748734335602 32.120765879356036 21.33133778641873 20 23.457461484661238 25.38387007770442 31.014231906934363 20.14443653069998 21 23.18138943964273 25.876661084268544 30.14109992492637 20.800849551162358 22 22.1085423524354 25.588076767598995 30.92857097024646 21.374809909719147 23 21.319146342245922 26.74899099758096 31.455530103242285 20.476332556930835 24 20.35137025415953 26.555532028207153 30.51999717671819 22.573100540915128 25 21.283053250944835 27.08088702381182 31.11721752744679 20.51884219779656 26 22.053680853657752 26.448856891695062 30.204302938138046 21.29315931650914 27 21.237816576514145 27.260710825360768 30.069876224758897 21.431596373366187 28 21.00200838001373 26.970201543821826 30.27584746578375 21.751942610380695 29 20.25752821677671 26.93025852278196 30.97460971337273 21.8376035470686 30 19.977927069497646 27.36706513439463 31.892497128594073 20.762510667513652 31 20.97329432071198 26.92111493965235 31.11577380379475 20.98981693584092 32 21.498168075099297 26.966351614083045 29.99688797346115 21.538592337356512 33 21.947807785841242 26.860638960005645 29.793964593479505 21.39758866067361 34 21.01307692801273 28.25415311170571 29.93945985485765 20.79331010542391 35 20.232022432257278 28.798597342265168 30.154253851533873 20.815126373943677 36 20.663054149261775 26.799040084185133 31.195499432135364 21.34240633441773 37 20.76363356368746 26.721560248192137 30.81243142312653 21.702374764993873 38 20.891643727501975 26.52216597047104 31.073745404146376 21.512444897880613 39 21.415073758237245 26.008039936604487 31.460984170372225 21.11590213478604 40 20.247422151212408 26.451744338999145 31.0679705095382 22.232863000250244 41 20.66594159656586 26.042047649297068 31.147696137878818 22.144314616258253 42 19.202005813393903 27.090511848158773 31.325755388297498 22.381726950149826 43 19.46829262032635 26.72492893671357 31.126681938054627 22.680096504905453 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 60.0 1 78.0 2 96.0 3 293.0 4 490.0 5 490.0 6 789.0 7 1088.0 8 1182.5 9 1277.0 10 1901.0 11 2525.0 12 2525.0 13 4305.0 14 6085.0 15 9636.0 16 13187.0 17 13025.0 18 12863.0 19 12863.0 20 14028.0 21 15193.0 22 13048.0 23 10903.0 24 12279.0 25 13655.0 26 13655.0 27 15293.5 28 16932.0 29 18238.0 30 19544.0 31 21125.5 32 22707.0 33 22707.0 34 24531.5 35 26356.0 36 28341.0 37 30326.0 38 31767.0 39 33208.0 40 33208.0 41 34498.0 42 35788.0 43 38786.0 44 41784.0 45 47758.5 46 53733.0 47 53733.0 48 54402.0 49 55071.0 50 50504.5 51 45938.0 52 43387.5 53 40837.0 54 40837.0 55 36748.5 56 32660.0 57 28709.0 58 24758.0 59 21993.0 60 19228.0 61 19228.0 62 16991.5 63 14755.0 64 12927.5 65 11100.0 66 9332.0 67 7564.0 68 7564.0 69 6404.0 70 5244.0 71 4448.5 72 3653.0 73 2840.5 74 2028.0 75 2028.0 76 1597.5 77 1167.0 78 917.0 79 667.0 80 548.5 81 430.0 82 430.0 83 313.0 84 196.0 85 157.5 86 119.0 87 112.5 88 106.0 89 106.0 90 81.5 91 57.0 92 31.5 93 6.0 94 5.0 95 4.0 96 4.0 97 2.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 623388.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 61.46599746310948 #Duplication Level Percentage of deduplicated Percentage of total 1 84.53057532939712 51.957561287519084 2 9.357270805403022 11.50307967173061 3 2.489013190110748 4.589690352869798 4 1.0374901151578835 2.550814591451825 5 0.5781608336819546 1.7768616168182143 6 0.3784419081079347 1.3956785618217975 7 0.2565143500004931 1.103683727046704 8 0.19978582558839764 0.9824028039025345 9 0.13763724196772742 0.7614009329055949 >10 0.9283028400731225 10.617886091105886 >50 0.06937257358006947 2.8916721516807167 >100 0.031937541298208756 3.9795669910845164 >500 0.0026178312539489428 1.1905554005749366 >1k 0.002094265003159154 1.87232094081497 >5k 7.853493761846828E-4 2.826824878672859 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 6136 0.984298703215333 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 6025 0.9664927781734649 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 5407 0.8673570873998216 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 2322 0.3724807022271843 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2135 0.3424833330125059 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 1330 0.213350273024184 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 1302 0.208858688328938 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 1262 0.2024421387643009 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 1170 0.18768407476563553 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 1060 0.17003856346288349 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 1055 0.16923649476730385 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 980 0.15720546433360927 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 907 0.1454952613781465 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 809 0.1297747149447856 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 784 0.1257643714668874 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 744 0.11934782190225028 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 729 0.11694161581551138 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 719 0.11533747842435207 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 1.6041373911592781E-4 0.0 11 0.0 0.0 0.0 1.6041373911592781E-4 0.0 12 0.0 0.0 0.0 6.416549564637113E-4 0.0 13 0.0 0.0 0.0 9.624824346955668E-4 0.0 14 0.0 0.0 0.0 0.0011228961738114947 1.6041373911592781E-4 15 0.0 0.0 0.0 0.001604137391159278 1.6041373911592781E-4 16 0.0 0.0 0.0 0.002566619825854845 1.6041373911592781E-4 17 0.0 0.0 0.0 0.0038499297387822673 1.6041373911592781E-4 18 0.0 0.0 0.0 0.004010343477898195 1.6041373911592781E-4 19 0.0 0.0 0.0 0.004010343477898195 1.6041373911592781E-4 20 0.0 0.0 0.0 0.00513323965170969 1.6041373911592781E-4 21 0.0 0.0 0.0 0.0073790319993326785 1.6041373911592781E-4 22 0.0 0.0 0.0 0.012031030433694585 1.6041373911592781E-4 23 0.0 0.0 0.0 0.02037254486772283 1.6041373911592781E-4 24 0.0 0.0 0.0 0.0328848165187652 1.6041373911592781E-4 25 0.0 0.0 0.0 0.03882012486605453 1.6041373911592781E-4 26 0.0 0.0 0.0 0.04603874312627128 1.6041373911592781E-4 27 0.0 0.0 0.0 0.09993775946922302 1.6041373911592781E-4 28 0.0 0.0 0.0 0.16458449633294192 1.6041373911592781E-4 29 0.0 0.0 0.0 0.25778487875929595 1.6041373911592781E-4 30 0.0 0.0 0.0 0.4153111705711371 1.6041373911592781E-4 31 0.0 0.0 0.0 0.6745397729824764 1.6041373911592781E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AATACGG 30 3.597605E-4 30.833334 5 GGTATCA 1635 0.0 27.042812 1 GCTAACG 40 0.0019302014 23.125 26 TGTACTG 95 1.6730337E-7 19.473684 5 GTTAGAC 50 0.0070313592 18.5 3 ACCCGTT 60 9.2303514E-4 18.5 30 GGACCAA 50 0.0070313592 18.5 6 TATACTG 60 9.2303514E-4 18.5 5 GTATTGG 185 0.0 18.0 1 TAATACT 125 8.556526E-9 17.76 4 TAGTGTG 65 0.0015788377 17.076923 5 CGCCGGA 65 0.0015788377 17.076923 14 TTTACAC 110 7.7935147E-7 16.818182 3 GCTTTAT 110 7.7935147E-7 16.818182 1 AATACCG 135 2.2135282E-8 16.444445 5 TTGGACC 275 0.0 16.145454 4 GCCGGAA 70 0.002590709 15.857143 15 GGACCCT 245 0.0 15.857142 6 TAAGCAG 130 2.5832014E-7 15.653846 5 GTATCAA 2840 0.0 15.568663 2 >>END_MODULE