##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088414_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2955766 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.375154866792567 31.0 31.0 34.0 30.0 34.0 2 31.569926374415296 31.0 31.0 34.0 30.0 34.0 3 31.64493231196245 31.0 31.0 34.0 30.0 34.0 4 35.43961971279188 37.0 35.0 37.0 33.0 37.0 5 35.269339995114635 37.0 35.0 37.0 33.0 37.0 6 35.31579360477115 37.0 35.0 37.0 32.0 37.0 7 35.19992719315399 37.0 35.0 37.0 32.0 37.0 8 35.235721298641366 37.0 35.0 37.0 32.0 37.0 9 36.73798094977749 39.0 37.0 39.0 32.0 39.0 10 36.59496827556715 39.0 35.0 39.0 32.0 39.0 11 36.709133266977155 39.0 35.0 39.0 32.0 39.0 12 36.57151242689712 39.0 35.0 39.0 32.0 39.0 13 36.611298729331075 39.0 35.0 39.0 32.0 39.0 14 37.61823906222617 39.0 36.0 41.0 32.0 41.0 15 37.608816800788695 39.0 36.0 41.0 32.0 41.0 16 37.559490839261294 39.0 36.0 41.0 32.0 41.0 17 37.62324588617638 39.0 36.0 41.0 32.0 41.0 18 37.59866308767338 39.0 36.0 41.0 32.0 41.0 19 37.66687281740165 39.0 37.0 41.0 32.0 41.0 20 37.62571259023888 39.0 37.0 41.0 32.0 41.0 21 37.584282720621324 39.0 36.0 41.0 32.0 41.0 22 37.469095659128634 39.0 36.0 41.0 32.0 41.0 23 37.35979302827084 39.0 36.0 41.0 32.0 41.0 24 37.28755219459186 39.0 36.0 41.0 31.0 41.0 25 37.226932713888715 39.0 36.0 41.0 31.0 41.0 26 37.00161074997141 39.0 36.0 40.0 31.0 41.0 27 36.828491835957244 39.0 35.0 40.0 31.0 41.0 28 36.70704040847618 39.0 35.0 40.0 30.0 41.0 29 36.55721291874932 38.0 35.0 40.0 30.0 41.0 30 36.37563020888663 38.0 35.0 40.0 30.0 41.0 31 36.14112010220024 38.0 35.0 40.0 30.0 41.0 32 35.99617358072324 38.0 35.0 40.0 30.0 41.0 33 36.05611404962369 38.0 35.0 40.0 30.0 41.0 34 36.028777988514655 38.0 35.0 40.0 30.0 41.0 35 35.94154138047464 38.0 35.0 40.0 29.0 41.0 36 35.85687567960387 38.0 35.0 40.0 29.0 41.0 37 35.72173067827426 38.0 35.0 40.0 28.0 41.0 38 35.60563014798871 38.0 35.0 40.0 27.0 41.0 39 35.53221872096776 38.0 34.0 40.0 27.0 41.0 40 35.370270177003185 38.0 34.0 40.0 26.0 41.0 41 35.228556996731136 38.0 34.0 40.0 25.0 41.0 42 35.057913244823844 38.0 34.0 40.0 24.0 41.0 43 34.7167695277637 38.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 3.0 14 4.0 15 21.0 16 31.0 17 78.0 18 200.0 19 384.0 20 946.0 21 1839.0 22 3419.0 23 6023.0 24 9656.0 25 15840.0 26 23554.0 27 34241.0 28 48682.0 29 65678.0 30 84961.0 31 103711.0 32 126518.0 33 156009.0 34 191955.0 35 233877.0 36 299672.0 37 408733.0 38 546102.0 39 593628.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.332094624540645 22.37792166226961 13.660655139818239 22.629328573371506 2 18.325063621409814 23.111200277694515 35.62183203947809 22.94190406141758 3 20.12178907261265 26.0768951263395 31.83452275992078 21.966793041127072 4 13.271720427124475 16.150060593429927 35.59730371078089 34.9809152686647 5 11.9188054805421 39.99501313703453 34.354647830714605 13.731533551708761 6 31.458748764279715 36.50045368950045 15.80551369763371 16.235283848586118 7 25.06923755128112 34.67544453789644 21.813634773524022 18.44168313729842 8 27.647215645622826 33.33423552473369 20.35391164253192 18.664637187111563 9 25.799978753392523 13.62218795398553 23.034062912964018 37.54377037965793 10 16.521910056479435 27.430520548649657 33.589431639717084 22.458137755153825 11 32.14740273756448 22.148235009131305 24.476294808181702 21.228067445122516 12 20.452803097403518 27.34898500084242 31.413379814234283 20.784832087519785 13 30.642818139189636 20.889779502166274 28.245165550994226 20.222236807649864 14 21.19379544930147 22.42650466917882 28.19698853021518 28.182711351304533 15 23.321196603520036 28.876676976458892 26.32546013453027 21.4766662854908 16 22.155001444633978 28.084598036515747 26.969996948337588 22.790403570512684 17 20.037952936734506 27.017294332501287 27.921425444368737 25.023327286395475 18 20.98515241057648 26.015895710282884 31.616575872379617 21.38237600676102 19 20.5010816147151 25.008407296112072 32.706648631860574 21.78386245731225 20 23.958628660049545 24.193965286832583 31.541671431365 20.305734621752872 21 23.657759105423096 25.008407296112072 30.559895472104355 20.773938126360477 22 22.3943302683636 24.548357346285194 31.411383715760994 21.645928669590216 23 21.359471622584465 26.01687684343077 32.219938926153155 20.403712607831608 24 20.31683157597726 25.56826216960341 30.952010409484377 23.16289584493495 25 21.36965510801599 26.193413145695565 31.706907786340327 20.730023959948117 26 22.377549508316964 25.549992793746192 30.64826511976929 21.424192578167556 27 21.36349765170856 26.58853914687428 30.332238749616852 21.715724451800313 28 21.086581278761578 26.12791405002967 30.686393983826864 22.099110687381884 29 20.225687689756224 26.230087226120062 31.413921129074495 22.130303955049214 30 19.83076468164259 26.538095370201837 32.62836097309462 21.00277897506095 31 20.981261710162443 26.067557445345805 31.730996296729852 21.2201845477619 32 21.732708204912026 26.119456005651326 30.23571554717119 21.912120242265456 33 22.310121978532806 26.013155303904302 29.975343109028252 21.70137960853464 34 21.330680439520584 27.93851069401299 30.040909869049177 20.689898997417252 35 20.216654498360153 28.634235592398046 30.3579173723495 20.791192536892297 36 20.799379923850537 26.06542601816247 31.71035866844669 21.42483538954031 37 21.04588116921299 26.052434461997333 31.09616931786887 21.80551505092081 38 20.965225258021103 25.701899270781247 31.646889503431595 21.685985967766054 39 21.901869092478904 25.32548246376743 31.54769355896238 21.224954884791288 40 20.46224227492975 25.88334123878548 31.12841138303912 22.526005103245655 41 21.049941030514592 25.531283599581293 31.03046722913789 22.388308140766217 42 19.295099815073318 26.917827730611965 31.348997180426323 22.438075273888394 43 19.697973384902596 26.403984618538818 31.01926877838097 22.878773218177624 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 274.0 1 407.0 2 540.0 3 1445.0 4 2350.0 5 2350.0 6 3966.0 7 5582.0 8 5883.0 9 6184.0 10 9364.5 11 12545.0 12 12545.0 13 22226.5 14 31908.0 15 51371.5 16 70835.0 17 68956.0 18 67077.0 19 67077.0 20 71911.0 21 76745.0 22 62679.5 23 48614.0 24 54289.0 25 59964.0 26 59964.0 27 65224.5 28 70485.0 29 74531.0 30 78577.0 31 84432.5 32 90288.0 33 90288.0 34 98456.0 35 106624.0 36 117323.5 37 128023.0 38 134234.5 39 140446.0 40 140446.0 41 148975.5 42 157505.0 43 175854.5 44 194204.0 45 233173.5 46 272143.0 47 272143.0 48 276857.0 49 281571.0 50 258537.0 51 235503.0 52 223012.5 53 210522.0 54 210522.0 55 186168.5 56 161815.0 57 139944.5 58 118074.0 59 105144.5 60 92215.0 61 92215.0 62 82391.5 63 72568.0 64 64190.5 65 55813.0 66 47749.0 67 39685.0 68 39685.0 69 33020.5 70 26356.0 71 22108.5 72 17861.0 73 13855.0 74 9849.0 75 9849.0 76 7498.5 77 5148.0 78 4159.5 79 3171.0 80 2640.0 81 2109.0 82 2109.0 83 1599.5 84 1090.0 85 870.5 86 651.0 87 550.0 88 449.0 89 449.0 90 372.5 91 296.0 92 176.5 93 57.0 94 46.0 95 35.0 96 35.0 97 24.0 98 13.0 99 7.5 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2955766.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.88105785704708 #Duplication Level Percentage of deduplicated Percentage of total 1 73.70596006019208 30.868835776901065 2 13.702764887603564 11.477725781184764 3 5.08121839507075 6.3842040476475 4 2.4359224962096353 4.080760439961531 5 1.305819989448167 2.734456126448365 6 0.7803954681486165 1.9610272651745728 7 0.5214875861182072 1.528831623616392 8 0.3562879432223788 1.19373727710918 9 0.2726107265406947 1.0275503049632226 >10 1.5514308895238869 12.41608186377188 >50 0.16220847420516066 4.781364809156111 >100 0.10885915271295239 8.728961779679455 >500 0.008244413776468111 2.230641170931824 >1k 0.0057387586091018445 4.485587681576622 >5k 6.466206883495036E-4 1.862303564420686 >10k+ 4.041379302184397E-4 4.237930487456911 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 34869 1.179694197713892 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 33612 1.137167150579579 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 30444 1.0299868122172051 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 14468 0.4894839442635175 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11799 0.3991858624803181 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 8106 0.2742436309234222 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 7972 0.2697101191366299 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 7797 0.2637894880717892 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 7552 0.25550060458101215 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 6258 0.2117217668787042 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 6099 0.2063424506540775 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 5688 0.19243742569608013 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 5542 0.1874979277791273 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 4701 0.15904506649037845 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 4563 0.15437622599353265 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4469 0.15119600130727534 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 4333 0.14659482516545624 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 3904 0.13208082101221816 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 3179 0.10755249231502088 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 3105 0.10504891117903109 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3028 0.10244383351050118 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 2966 0.10034623850467188 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 6.76643550267511E-5 0.0 0.0 0.0 0.0 7 6.76643550267511E-5 0.0 0.0 0.0 0.0 8 1.0149653254012665E-4 0.0 0.0 0.0 0.0 9 1.0149653254012665E-4 0.0 0.0 2.3682524259362886E-4 0.0 10 1.0149653254012665E-4 0.0 0.0 3.0448959762037996E-4 0.0 11 1.0149653254012665E-4 0.0 0.0 5.751470177273844E-4 0.0 12 1.0149653254012665E-4 0.0 0.0 9.81133147887891E-4 0.0 13 1.0149653254012665E-4 0.0 0.0 0.0010487975029146422 0.0 14 1.0149653254012665E-4 0.0 0.0 0.0012517905679948955 0.0 15 1.0149653254012665E-4 0.0 0.0 0.0017254410531821532 0.0 16 1.0149653254012665E-4 0.0 0.0 0.002875735088636922 0.0 17 1.0149653254012665E-4 0.0 0.0 0.003958364769064939 0.0 18 1.0149653254012665E-4 0.0 0.0 0.004398183076738822 0.0 19 1.0149653254012665E-4 0.0 0.0 0.005007162271979582 0.0 20 1.0149653254012665E-4 0.0 0.0 0.005954463242354097 0.0 21 1.0149653254012665E-4 0.0 0.0 0.008627205265910766 0.0 22 1.0149653254012665E-4 0.0 0.0 0.014581668508264863 0.0 23 1.0149653254012665E-4 0.0 0.0 0.02358102772682276 0.0 24 1.0149653254012665E-4 0.0 0.0 0.036166597761798466 0.0 25 1.353287100535022E-4 0.0 0.0 0.04242555060177294 0.0 26 1.353287100535022E-4 0.0 0.0 0.052304546435678605 0.0 27 1.353287100535022E-4 0.0 0.0 0.12118685985291122 0.0 28 1.353287100535022E-4 0.0 0.0 0.19368921626407504 0.0 29 1.353287100535022E-4 0.0 0.0 0.2788448070652413 0.0 30 1.353287100535022E-4 0.0 0.0 0.429533325709816 0.0 31 1.353287100535022E-4 0.0 0.0 0.6675088623388996 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8585 0.0 28.100176 1 ATTGGAC 895 0.0 18.396648 3 GTATTGG 900 0.0 17.472223 1 GTATCAA 14160 0.0 17.036724 2 TATACTG 380 0.0 16.065788 5 CGAACGA 270 0.0 15.759259 16 TAGTACT 470 0.0 15.744681 4 CAATGCG 170 1.4897523E-9 15.235294 19 TATACCG 220 1.8189894E-12 15.136364 5 ACGTTTA 160 1.0984877E-8 15.03125 26 TTGGACC 1605 0.0 14.86916 4 GGACCCT 1615 0.0 14.547988 6 CGTCTGT 715 0.0 14.230769 34 TAACGAA 305 0.0 13.95082 13 AGCCGTC 200 9.858923E-10 13.874999 12 TGGACCC 1685 0.0 13.833829 5 CTAGTAC 415 0.0 13.819277 3 TGCGACG 175 3.5719495E-8 13.742858 22 TAAACGT 190 7.1395334E-9 13.6315775 4 CGGCTAA 95 0.0012458845 13.6315775 26 >>END_MODULE