##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088411_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3284409 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.503654995464938 31.0 31.0 34.0 30.0 34.0 2 31.698031822467907 31.0 31.0 34.0 30.0 34.0 3 31.78566311321154 31.0 31.0 34.0 30.0 34.0 4 35.554501890598885 37.0 35.0 37.0 33.0 37.0 5 35.38666469370897 37.0 35.0 37.0 33.0 37.0 6 35.421150958970095 37.0 35.0 37.0 33.0 37.0 7 35.30852887079532 37.0 35.0 37.0 32.0 37.0 8 35.33492600951952 37.0 35.0 37.0 32.0 37.0 9 36.87771011466599 39.0 37.0 39.0 33.0 39.0 10 36.739058990521585 39.0 35.0 39.0 32.0 39.0 11 36.84434064088851 39.0 37.0 39.0 32.0 39.0 12 36.710313179631406 39.0 35.0 39.0 32.0 39.0 13 36.745227832465446 39.0 35.0 39.0 32.0 39.0 14 37.794068278341705 40.0 37.0 41.0 32.0 41.0 15 37.78836496916188 40.0 37.0 41.0 32.0 41.0 16 37.74826643088604 40.0 37.0 41.0 32.0 41.0 17 37.79266589514278 40.0 37.0 41.0 32.0 41.0 18 37.76394565963009 40.0 37.0 41.0 32.0 41.0 19 37.82045719640885 40.0 37.0 41.0 32.0 41.0 20 37.77735537809085 40.0 37.0 41.0 32.0 41.0 21 37.73312489400681 40.0 37.0 41.0 32.0 41.0 22 37.624360120801036 39.0 37.0 41.0 32.0 41.0 23 37.51803992742682 39.0 36.0 41.0 32.0 41.0 24 37.447702767834336 39.0 36.0 41.0 32.0 41.0 25 37.39136508272873 39.0 36.0 41.0 32.0 41.0 26 37.185903156397394 39.0 36.0 41.0 31.0 41.0 27 37.02722346699208 39.0 36.0 41.0 31.0 41.0 28 36.92169489244488 39.0 35.0 40.0 31.0 41.0 29 36.782966433230456 39.0 35.0 40.0 30.0 41.0 30 36.6092916564289 38.0 35.0 40.0 30.0 41.0 31 36.39922068171169 38.0 35.0 40.0 30.0 41.0 32 36.26027026475692 38.0 35.0 40.0 30.0 41.0 33 36.35245397269341 38.0 35.0 40.0 30.0 41.0 34 36.34137922530355 38.0 35.0 40.0 30.0 41.0 35 36.273187657201035 38.0 35.0 40.0 30.0 41.0 36 36.20226409073901 38.0 35.0 40.0 30.0 41.0 37 36.091014852291536 38.0 35.0 40.0 29.0 41.0 38 35.98220593111272 38.0 35.0 40.0 29.0 41.0 39 35.94269745333179 38.0 35.0 40.0 28.0 41.0 40 35.80661391440591 38.0 35.0 40.0 27.0 41.0 41 35.6910540069766 38.0 35.0 40.0 27.0 41.0 42 35.53989560983422 38.0 35.0 40.0 26.0 41.0 43 35.21567563601245 38.0 34.0 40.0 25.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 3.0 13 3.0 14 4.0 15 12.0 16 37.0 17 69.0 18 197.0 19 410.0 20 867.0 21 1692.0 22 3230.0 23 5518.0 24 9234.0 25 14694.0 26 22499.0 27 33568.0 28 47705.0 29 64989.0 30 84873.0 31 106025.0 32 132147.0 33 164162.0 34 203865.0 35 253526.0 36 325902.0 37 449138.0 38 615931.0 39 744108.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.54257280381341 21.86646060219662 13.250663970291154 23.340302623698815 2 18.149505740606607 22.723996919993823 35.853725891020275 23.2727714483793 3 19.650963080420254 25.83813404481598 31.54293512166116 22.967967753102613 4 13.164133943123405 16.007781004131946 36.02185355112594 34.806231501618704 5 12.368069871931297 39.29562365710239 34.56192575285234 13.774380718113974 6 31.771591175155105 36.61797297474219 15.899725034245126 15.710710815857587 7 25.71302782327049 33.858176615640744 22.076422272621954 18.352373288466815 8 27.213023712941965 33.551576554564306 20.47138465398189 18.764015078511843 9 25.898510203814446 13.759553088546525 22.515831615368246 37.82610509227079 10 16.306586664450133 27.139159587006368 33.967145991866424 22.587107756677078 11 32.918494621102305 22.1042811659571 24.15049404626525 20.826730166675343 12 20.58379452741726 26.899512210568172 31.365947420068572 21.150745841945994 13 30.333128425844652 20.791533575751377 27.764751588489737 21.110586409914234 14 21.27439061334931 22.095877827639615 27.762589860154446 28.86714169885663 15 23.427685163449496 28.91780530378525 25.597451474527077 22.05705805823818 16 22.622273900723084 27.88361620005304 26.378474788006002 23.115635111217877 17 20.624654237642144 26.990578822552248 27.50942406990116 24.87534286990445 18 21.514007542909546 26.14686538734975 30.671058324343893 21.668068745396813 19 21.14161177855742 25.16939881726058 31.554261360262988 22.134728043919015 20 24.053216271176943 24.44040921821856 30.511760258847175 20.99461425175732 21 23.875680525781046 25.284305334688828 29.597988557454325 21.2420255820758 22 22.720312847760436 24.890566308885404 30.46280167908443 21.926319164269735 23 21.73164182658128 25.969116513808117 31.118596983506013 21.180644676104592 24 20.913260193843094 25.776387776309225 29.988165298536206 23.32218673131148 25 21.96991909351119 26.13200731090434 30.625174879255297 21.272898716329177 26 22.69839109562786 25.743078891818893 29.799211973904587 21.759318038648658 27 21.87589913436481 26.51219747601471 29.486583430991693 22.125319958628783 28 21.507613698537543 26.176033496437256 29.795923711084704 22.520429093940493 29 20.817839678310467 26.20200468333877 30.487220075209876 22.492935563140886 30 20.553499883845163 26.532657778005113 31.461855085648587 21.451987252501134 31 21.64161040844791 26.038322267415538 30.622312872726877 21.697754451409676 32 22.117769132894228 26.066059373238836 29.35785403096874 22.458317462898194 33 22.57252370213332 25.995544403879055 29.295925081194213 22.13600681279341 34 21.849105881758334 27.52805755921385 29.328016090566067 21.294820468461754 35 21.01650555701193 28.20927600673363 29.549852043396545 21.224366392857892 36 21.335284369273133 26.152741634796396 30.689204663609193 21.82276933232128 37 21.583822234076205 25.99791926036008 30.189145139962775 22.229113365600934 38 21.51306368969273 25.701275328377193 30.760663486185795 22.024997495744287 39 22.248386239350822 25.258699510322863 30.665212523775203 21.82770172655111 40 21.06187140517518 25.856493512227008 30.353071130909704 22.728563951688113 41 21.44038699199765 25.475542175167586 30.41268611795912 22.671384714875646 42 20.0294177734868 26.668085491179696 30.661832920321437 22.640663815012076 43 20.264559011986634 26.23044206735519 30.471052783012105 23.033946137646073 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 294.0 1 426.5 2 559.0 3 1478.0 4 2397.0 5 2397.0 6 3969.5 7 5542.0 8 5736.0 9 5930.0 10 8707.0 11 11484.0 12 11484.0 13 20262.0 14 29040.0 15 46637.5 16 64235.0 17 63389.0 18 62543.0 19 62543.0 20 67743.5 21 72944.0 22 61313.0 23 49682.0 24 55851.0 25 62020.0 26 62020.0 27 68566.5 28 75113.0 29 81874.0 30 88635.0 31 96256.0 32 103877.0 33 103877.0 34 114569.0 35 125261.0 36 137430.5 37 149600.0 38 158217.0 39 166834.0 40 166834.0 41 175941.5 42 185049.0 43 201282.0 44 217515.0 45 252810.0 46 288105.0 47 288105.0 48 292531.0 49 296957.0 50 276366.0 51 255775.0 52 244113.5 53 232452.0 54 232452.0 55 209617.5 56 186783.0 57 164445.0 58 142107.0 59 128458.0 60 114809.0 61 114809.0 62 101510.5 63 88212.0 64 77388.0 65 66564.0 66 56814.0 67 47064.0 68 47064.0 69 40063.5 70 33063.0 71 28358.5 72 23654.0 73 18306.0 74 12958.0 75 12958.0 76 9831.5 77 6705.0 78 5404.0 79 4103.0 80 3345.0 81 2587.0 82 2587.0 83 2006.0 84 1425.0 85 1215.0 86 1005.0 87 913.5 88 822.0 89 822.0 90 682.5 91 543.0 92 323.0 93 103.0 94 76.0 95 49.0 96 49.0 97 27.0 98 5.0 99 5.0 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3284409.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.648431300448465 #Duplication Level Percentage of deduplicated Percentage of total 1 73.15003068812932 31.1973405842838 2 13.934668107531802 11.885834709572407 3 5.159042855176395 6.600752543551799 4 2.51115882881603 4.283879391811004 5 1.3440698289163677 2.8661234880772612 6 0.8174015164690691 2.0916535452008094 7 0.5369682865815177 1.6030598556553965 8 0.3885522442182538 1.3256914955341819 9 0.2961677158444408 1.1367979634342138 >10 1.5871549510302587 12.705230535878286 >50 0.15663362597797922 4.652099171538218 >100 0.10424281395820557 8.672889575968412 >500 0.008345122410339224 2.4127106422548104 >1k 0.004707504949176398 3.682414256905476 >5k 4.992808279429512E-4 1.3945142024643156 >10k+ 3.5662916281639374E-4 3.489008037869459 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 31255 0.9516171706995079 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 30464 0.9275336902316368 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 28101 0.8555877176076426 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 14261 0.4342029266148035 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10616 0.3232240564436403 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 7957 0.2422658079429206 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 7218 0.21976556512906886 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 7080 0.21556389597032527 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 6919 0.21066194861845772 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 5770 0.17567848584022272 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 5666 0.17251201053218404 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 5233 0.15932851237467685 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 4959 0.1509860678131134 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 4489 0.13667603517101554 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 4301 0.1309520221141764 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3934 0.11977801790215531 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 3810 0.11600260503487841 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 3552 0.10814731052070554 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 3.0446877961910346E-5 0.0 3 0.0 0.0 0.0 3.0446877961910346E-5 0.0 4 0.0 0.0 0.0 9.134063388573104E-5 0.0 5 0.0 0.0 0.0 9.134063388573104E-5 0.0 6 0.0 0.0 0.0 9.134063388573104E-5 0.0 7 0.0 0.0 0.0 9.134063388573104E-5 0.0 8 0.0 0.0 0.0 9.134063388573104E-5 0.0 9 0.0 0.0 0.0 9.134063388573104E-5 0.0 10 0.0 3.0446877961910346E-5 0.0 1.2178751184764138E-4 0.0 11 0.0 3.0446877961910346E-5 0.0 2.7402190165719313E-4 0.0 12 0.0 3.0446877961910346E-5 0.0 6.089375592382069E-4 0.0 13 0.0 3.0446877961910346E-5 0.0 6.698313151620276E-4 0.0 14 3.0446877961910346E-5 3.0446877961910346E-5 0.0 8.220657049715793E-4 0.0 15 3.0446877961910346E-5 3.0446877961910346E-5 0.0 0.0011874282405145034 0.0 16 3.0446877961910346E-5 3.0446877961910346E-5 0.0 0.0017354720438288898 0.0 17 3.0446877961910346E-5 3.0446877961910346E-5 0.0 0.002283515847143276 0.0 18 3.0446877961910346E-5 3.0446877961910346E-5 0.0 0.002466197114914738 0.0 19 3.0446877961910346E-5 3.0446877961910346E-5 0.0 0.0028620065284195727 0.0 20 3.0446877961910346E-5 3.0446877961910346E-5 0.0 0.0035622847215435105 0.0 21 3.0446877961910346E-5 3.0446877961910346E-5 0.0 0.0054804380331438625 0.0 22 3.0446877961910346E-5 3.0446877961910346E-5 0.0 0.009194957144496925 0.0 23 3.0446877961910346E-5 3.0446877961910346E-5 0.0 0.015040757713183712 0.0 24 3.0446877961910346E-5 3.0446877961910346E-5 0.0 0.024083480467871083 0.0 25 3.0446877961910346E-5 3.0446877961910346E-5 0.0 0.029503024745091127 0.0 26 3.0446877961910346E-5 3.0446877961910346E-5 0.0 0.03775412867276883 0.0 27 3.0446877961910346E-5 3.0446877961910346E-5 0.0 0.1012358692233519 0.0 28 3.0446877961910346E-5 3.0446877961910346E-5 0.0 0.16901061956656432 0.0 29 3.0446877961910346E-5 3.0446877961910346E-5 0.0 0.24701552090497864 0.0 30 3.0446877961910346E-5 3.0446877961910346E-5 0.0 0.3845745155368896 0.0 31 3.0446877961910346E-5 3.0446877961910346E-5 0.0 0.6095160499194833 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7505 0.0 27.682213 1 GTATTGG 1015 0.0 19.13793 1 CAATGCG 190 0.0 17.526314 19 ATTGGAC 1060 0.0 17.452831 3 GGACCCT 1575 0.0 17.384127 6 TGGACCC 1710 0.0 16.011696 5 GACCCTC 1640 0.0 15.905489 7 CATACGT 70 0.002593869 15.857142 2 GTATCAA 13080 0.0 15.855122 2 TATACCG 165 9.767973E-10 15.69697 5 CGATGCG 285 0.0 15.578948 33 GTACTAG 365 0.0 15.20548 1 TTGGACC 1855 0.0 15.15903 4 CTAGACA 335 0.0 14.910448 4 CGTCGTA 325 0.0 14.800001 10 CGCATTG 150 8.115421E-8 14.8 14 GTCGTAG 360 0.0 14.388888 11 GCGCTAG 130 4.44973E-6 14.230769 11 TACCGTC 395 0.0 14.050632 7 CCGTCGT 350 0.0 13.742858 9 >>END_MODULE