##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088409_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1294428 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.454046884029086 31.0 31.0 34.0 30.0 34.0 2 31.658857812099242 31.0 31.0 34.0 30.0 34.0 3 31.743768676202926 31.0 31.0 34.0 30.0 34.0 4 35.525320064151884 37.0 35.0 37.0 33.0 37.0 5 35.35189133733201 37.0 35.0 37.0 33.0 37.0 6 35.38910468562176 37.0 35.0 37.0 33.0 37.0 7 35.27288501175809 37.0 35.0 37.0 32.0 37.0 8 35.300120207535684 37.0 35.0 37.0 32.0 37.0 9 36.824924986171496 39.0 37.0 39.0 32.0 39.0 10 36.69136328942204 39.0 35.0 39.0 32.0 39.0 11 36.79730351939235 39.0 37.0 39.0 32.0 39.0 12 36.658821502625095 39.0 35.0 39.0 32.0 39.0 13 36.701656639071466 39.0 35.0 39.0 32.0 39.0 14 37.72973313309045 40.0 37.0 41.0 32.0 41.0 15 37.72084271971867 40.0 37.0 41.0 32.0 41.0 16 37.674480156486105 39.0 36.0 41.0 32.0 41.0 17 37.729521456581594 39.0 37.0 41.0 32.0 41.0 18 37.70752255050107 39.0 37.0 41.0 32.0 41.0 19 37.76225715142132 40.0 37.0 41.0 32.0 41.0 20 37.72605197044563 40.0 37.0 41.0 32.0 41.0 21 37.68076092297138 40.0 37.0 41.0 32.0 41.0 22 37.58028411004706 39.0 36.0 41.0 32.0 41.0 23 37.477525980587565 39.0 36.0 41.0 32.0 41.0 24 37.400906809803246 39.0 36.0 41.0 32.0 41.0 25 37.34492609863198 39.0 36.0 41.0 31.0 41.0 26 37.135798978390454 39.0 36.0 41.0 31.0 41.0 27 36.970777053648405 39.0 36.0 40.0 31.0 41.0 28 36.86701152941686 39.0 35.0 40.0 31.0 41.0 29 36.720574647643595 39.0 35.0 40.0 30.0 41.0 30 36.54536752913256 38.0 35.0 40.0 30.0 41.0 31 36.33637637628358 38.0 35.0 40.0 30.0 41.0 32 36.181897332257954 38.0 35.0 40.0 30.0 41.0 33 36.26648295617833 38.0 35.0 40.0 30.0 41.0 34 36.25064739019861 38.0 35.0 40.0 30.0 41.0 35 36.18492415182614 38.0 35.0 40.0 30.0 41.0 36 36.11670096753161 38.0 35.0 40.0 30.0 41.0 37 35.99545436285371 38.0 35.0 40.0 29.0 41.0 38 35.89241502810508 38.0 35.0 40.0 29.0 41.0 39 35.84027153306325 38.0 35.0 40.0 28.0 41.0 40 35.698806731622 38.0 35.0 40.0 27.0 41.0 41 35.58091218669559 38.0 35.0 40.0 27.0 41.0 42 35.435093338524815 38.0 34.0 40.0 26.0 41.0 43 35.09970890617323 38.0 34.0 40.0 25.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 0.0 13 1.0 14 3.0 15 6.0 16 12.0 17 24.0 18 80.0 19 153.0 20 355.0 21 714.0 22 1225.0 23 2157.0 24 3671.0 25 6028.0 26 9171.0 27 13717.0 28 19271.0 29 26514.0 30 34383.0 31 43040.0 32 53592.0 33 66128.0 34 82260.0 35 100652.0 36 129391.0 37 178376.0 38 240255.0 39 283248.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.02391172008022 22.22332953242668 13.524506577422615 23.228252170070487 2 17.976743395538417 23.03511666929331 35.83250671339 23.155633221778267 3 19.596532213456445 25.842302545989426 31.99104160293195 22.570123637622178 4 13.350066593120669 16.216738204056156 36.078870358181376 34.3543248446418 5 12.267271721563501 39.39817432873826 34.63746148878115 13.697092460917101 6 31.343651404326856 37.02685665019607 15.87048487826283 15.759007067214245 7 25.134190545939983 34.397818959416824 22.146152586316116 18.321837908327076 8 27.09304804902243 33.71241969425878 20.633747106830196 18.560785149888602 9 25.719236604894206 13.86303448318485 22.97292703804306 37.44480187387788 10 16.36097179603655 27.538032242813042 34.003127250028584 22.097868711121823 11 32.48006069089976 22.342455509306042 24.357785832815733 20.819697966978463 12 20.186522541230566 27.296690121041884 31.559345131594807 20.957442206132747 13 30.126820495230326 21.108860438742056 28.002870766083554 20.761448299944067 14 20.991047783267977 22.498818010735246 28.27264243356911 28.237491772427664 15 23.337412355109745 29.142679237470144 25.838903361175745 21.681005046244366 16 22.362078076185004 28.176383699981766 26.741773200208897 22.719765023624333 17 20.290429440648687 27.399978986857516 27.816919905935283 24.49267166655851 18 21.16795990197987 26.474396412932972 31.008986208580158 21.348657476506997 19 20.778675986613393 25.552290278022415 31.96446615802501 21.70456757733918 20 23.69857574156307 24.81034093823681 30.944633459721203 20.546449860478912 21 23.471911917850974 25.692429397386334 29.948672309313455 20.886986375449233 22 22.401477718343546 25.242423680575516 30.825971008043705 21.530127593037232 23 21.623682429613698 26.330085566752263 31.418201707626842 20.628030296007193 24 20.53818366104565 25.923805727317394 30.475932226435155 23.062078385201804 25 21.471800671802526 26.527392794346227 31.132592929077553 20.868213604773693 26 22.243261116106883 26.269827290509784 30.009780381759356 21.477131211623977 27 21.556085004341686 26.98195650897539 29.747270609103015 21.714687877579905 28 21.179239015225257 26.69225325780963 30.139412929880997 21.989094797084118 29 20.379580787807434 26.631840473166523 30.91944859041986 22.06913014860618 30 20.19378443605979 26.9656558727098 31.823863513459226 21.016696177771184 31 21.225977806413336 26.41676477950106 31.044291378122228 21.312966035963377 32 21.86695590639263 26.460567911077327 29.85820764074943 21.814268541780617 33 22.207260658762017 26.44673940922168 29.62783561542241 21.718164316593892 34 21.453645934729472 27.98062155639402 29.655956144335565 20.909776364540942 35 20.53378017162793 28.465777934346292 29.985677071262362 21.014764822763414 36 21.00935702874165 26.413983628289873 31.020265321825548 21.55639402114293 37 21.131186902631896 26.163371002481405 30.697265510325796 22.0081765845609 38 21.05524602372631 26.110992654670635 31.15167471655434 21.682086605048717 39 21.873445259218744 25.63634284796064 31.096669725933 21.393542166887613 40 20.60724891612357 26.016279005089505 30.83779090069127 22.538681178095654 41 20.99931398270124 25.717923283488926 30.827438837849613 22.455323895960223 42 19.5642399577265 26.928805619161512 31.031621689271244 22.475332733840737 43 19.742851668845233 26.523452830130374 30.899517006739657 22.834178494284735 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 127.0 1 184.5 2 242.0 3 627.5 4 1013.0 5 1013.0 6 1604.0 7 2195.0 8 2314.5 9 2434.0 10 3651.0 11 4868.0 12 4868.0 13 8539.0 14 12210.0 15 19499.0 16 26788.0 17 26369.5 18 25951.0 19 25951.0 20 28897.5 21 31844.0 22 27119.5 23 22395.0 24 25212.0 25 28029.0 26 28029.0 27 30371.5 28 32714.0 29 34518.5 30 36323.0 31 39816.5 32 43310.0 33 43310.0 34 47337.0 35 51364.0 36 56122.5 37 60881.0 38 63495.5 39 66110.0 40 66110.0 41 69804.5 42 73499.0 43 79966.0 44 86433.0 45 100381.0 46 114329.0 47 114329.0 48 115441.0 49 116553.0 50 106926.5 51 97300.0 52 92047.5 53 86795.0 54 86795.0 55 77771.5 56 68748.0 57 60575.5 58 52403.0 59 46982.0 60 41561.0 61 41561.0 62 37369.0 63 33177.0 64 29556.0 65 25935.0 66 21978.5 67 18022.0 68 18022.0 69 15168.0 70 12314.0 71 10340.5 72 8367.0 73 6485.0 74 4603.0 75 4603.0 76 3458.0 77 2313.0 78 1855.0 79 1397.0 80 1117.0 81 837.0 82 837.0 83 637.0 84 437.0 85 344.5 86 252.0 87 216.0 88 180.0 89 180.0 90 151.5 91 123.0 92 74.0 93 25.0 94 22.0 95 19.0 96 19.0 97 11.5 98 4.0 99 4.0 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1294428.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 51.662188577049115 #Duplication Level Percentage of deduplicated Percentage of total 1 79.59353756842059 41.119763473741884 2 11.702458606929454 12.091492467326018 3 3.68192050068041 5.706482136955634 4 1.5490044912433865 3.2009984853324744 5 0.8215490478760641 2.1221510918334188 6 0.48839402449442426 1.5138902516000936 7 0.34214676019350865 1.2373235312300412 8 0.2566204732270774 1.0606060224471086 9 0.19556264403600437 0.909287477533295 >10 1.1694567819496782 11.487960352747567 >50 0.1161853004962887 4.188668468401724 >100 0.07278713316260012 6.746005218299567 >500 0.00676739171130483 2.260165555208229 >1k 0.003007729649468814 3.0644429546622045 >5k 1.503864824734407E-4 0.4107626169738376 >10k+ 4.5115944742032206E-4 2.879999895707052 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 13094 1.0115664988705435 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 12721 0.9827506821545886 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 11254 0.8694187702985412 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 5287 0.4084429570435744 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4397 0.3396867187668994 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 2946 0.22759087411582568 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 2943 0.22735911151489305 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 2918 0.22542775650712127 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 2571 0.1986205489992491 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 2429 0.18765045255510543 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 2288 0.17675761031127263 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 2050 0.15837111063728534 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 1985 0.15334958761707873 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 1725 0.1332634955362523 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1642 0.12685139691045003 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 1629 0.1258470923064087 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 1561 0.12059380668526948 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 1503 0.11611306306723898 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 1361 0.1051429666230953 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 7.725420031087091E-5 0.0 0.0 7.725420031087091E-5 0.0 7 7.725420031087091E-5 0.0 0.0 7.725420031087091E-5 0.0 8 7.725420031087091E-5 0.0 0.0 1.5450840062174181E-4 0.0 9 7.725420031087091E-5 0.0 0.0 1.5450840062174181E-4 0.0 10 7.725420031087091E-5 0.0 0.0 1.5450840062174181E-4 0.0 11 7.725420031087091E-5 0.0 0.0 6.180336024869673E-4 0.0 12 7.725420031087091E-5 0.0 0.0 7.72542003108709E-4 0.0 13 7.725420031087091E-5 0.0 0.0 7.72542003108709E-4 0.0 14 7.725420031087091E-5 0.0 0.0 9.270504037304508E-4 0.0 15 7.725420031087091E-5 0.0 0.0 0.0013133214052848054 0.0 16 7.725420031087091E-5 0.0 0.0 0.0020086092080826433 0.0 17 7.725420031087091E-5 0.0 0.0 0.003012913812123965 0.0 18 7.725420031087091E-5 0.0 0.0 0.003244676413056578 0.0 19 7.725420031087091E-5 0.0 0.0 0.003630947414610932 0.0 20 7.725420031087091E-5 0.0 0.0 0.004403489417719641 0.0 21 7.725420031087091E-5 0.0 0.0 0.006643861226734897 0.0 22 7.725420031087091E-5 7.725420031087091E-5 0.0 0.010429317041967572 0.0 23 7.725420031087091E-5 1.5450840062174181E-4 0.0 0.016841415667769855 0.0 24 7.725420031087091E-5 2.317626009326127E-4 0.0 0.027888766312224395 0.0 25 7.725420031087091E-5 2.317626009326127E-4 0.0 0.03383733973616145 0.0 26 7.725420031087091E-5 2.317626009326127E-4 0.0 0.043262352174087707 0.0 27 7.725420031087091E-5 2.317626009326127E-4 0.0 0.11140055684827584 0.0 28 7.725420031087091E-5 2.317626009326127E-4 0.0 0.17884347371966614 0.0 29 7.725420031087091E-5 2.317626009326127E-4 0.0 0.25949685884421536 0.0 30 7.725420031087091E-5 2.317626009326127E-4 0.0 0.40929275324699405 0.0 31 7.725420031087091E-5 2.317626009326127E-4 0.0 0.6497850788147351 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 2935 0.0 28.616695 1 CTAGCGG 55 1.9029E-5 23.545454 29 TCTACCG 40 0.0019313183 23.125 5 TGCTACG 65 2.6832804E-6 22.76923 18 GTATTGG 280 0.0 20.482143 1 CGCAATA 75 9.267256E-6 19.733332 36 CGACGAA 80 1.6169275E-5 18.5 10 GCTACGT 60 9.237675E-4 18.5 19 ATTGGAC 255 0.0 18.137255 3 CGTATAC 65 0.0015800797 17.076923 3 GGACCCT 565 0.0 17.026548 6 GTATCAA 5050 0.0 16.631683 2 ATCACGT 90 4.4466535E-5 16.444445 23 TTGGACC 605 0.0 16.206612 4 TAGACCA 70 0.0025927303 15.857143 4 GACCCTC 575 0.0 15.765218 7 TCTATAC 165 9.731593E-10 15.69697 3 TGGACCC 590 0.0 15.364407 5 ACGTTTA 100 1.0935328E-4 14.8 26 ACGTTGC 100 1.0935328E-4 14.8 6 >>END_MODULE