##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088408_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 450178 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.417121671872014 31.0 31.0 34.0 30.0 34.0 2 31.626230068994932 31.0 31.0 34.0 30.0 34.0 3 31.708937353668993 31.0 31.0 34.0 30.0 34.0 4 35.49899373136848 37.0 35.0 37.0 33.0 37.0 5 35.31168782126181 37.0 35.0 37.0 33.0 37.0 6 35.34112728742853 37.0 35.0 37.0 32.0 37.0 7 35.215601384341305 37.0 35.0 37.0 32.0 37.0 8 35.249898928868134 37.0 35.0 37.0 32.0 37.0 9 36.75837779722688 39.0 37.0 39.0 32.0 39.0 10 36.62806045608626 39.0 35.0 39.0 32.0 39.0 11 36.72970691593103 39.0 35.0 39.0 32.0 39.0 12 36.59529785995762 39.0 35.0 39.0 32.0 39.0 13 36.62976644793837 39.0 35.0 39.0 32.0 39.0 14 37.639738059167705 39.0 36.0 41.0 32.0 41.0 15 37.63032400517129 39.0 36.0 41.0 32.0 41.0 16 37.60060464971633 39.0 36.0 41.0 32.0 41.0 17 37.65578948771375 39.0 36.0 41.0 32.0 41.0 18 37.638822865622046 39.0 36.0 41.0 32.0 41.0 19 37.689927095504444 40.0 37.0 41.0 32.0 41.0 20 37.660943004767006 39.0 37.0 41.0 32.0 41.0 21 37.60836380276246 39.0 37.0 41.0 32.0 41.0 22 37.51292155547361 39.0 36.0 41.0 32.0 41.0 23 37.38692694889577 39.0 36.0 41.0 32.0 41.0 24 37.312751844825826 39.0 36.0 41.0 31.0 41.0 25 37.25156493653621 39.0 36.0 41.0 31.0 41.0 26 37.036636619292814 39.0 36.0 41.0 31.0 41.0 27 36.86113048616325 39.0 35.0 40.0 31.0 41.0 28 36.75690726779185 39.0 35.0 40.0 30.0 41.0 29 36.60395665714451 39.0 35.0 40.0 30.0 41.0 30 36.430358658130785 38.0 35.0 40.0 30.0 41.0 31 36.201198192714884 38.0 35.0 40.0 30.0 41.0 32 36.035388224213534 38.0 35.0 40.0 30.0 41.0 33 36.1030436849424 38.0 35.0 40.0 30.0 41.0 34 36.060253943995484 38.0 35.0 40.0 30.0 41.0 35 35.99013945594854 38.0 35.0 40.0 29.0 41.0 36 35.90817854270977 38.0 35.0 40.0 29.0 41.0 37 35.77510895690149 38.0 35.0 40.0 28.0 41.0 38 35.66079417474865 38.0 35.0 40.0 27.0 41.0 39 35.597732452496565 38.0 35.0 40.0 27.0 41.0 40 35.457983286611075 38.0 34.0 40.0 26.0 41.0 41 35.323469827490456 38.0 34.0 40.0 25.0 41.0 42 35.14612220055178 38.0 34.0 40.0 24.0 41.0 43 34.80618555327004 38.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 3.0 16 4.0 17 13.0 18 24.0 19 60.0 20 131.0 21 296.0 22 542.0 23 885.0 24 1457.0 25 2335.0 26 3531.0 27 5293.0 28 7486.0 29 10005.0 30 12569.0 31 15719.0 32 19095.0 33 23275.0 34 29096.0 35 35241.0 36 44689.0 37 60760.0 38 81222.0 39 96447.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.023772818751695 22.296958092132446 13.816756927259885 22.862512161855978 2 17.869598247804202 23.20770895068173 35.95622176117003 22.966471040344043 3 19.593582982731274 26.02925953733856 31.8682832124182 22.50887426751196 4 13.265197321948207 16.26467752755577 36.05196166849557 34.41816348200045 5 12.151193527893412 39.72828525605428 34.39839352433926 13.722127691713057 6 31.111249328043574 37.016691175490585 16.122733674235526 15.749325822230317 7 24.76398224702229 34.54366939299566 22.46111538102706 18.231232978954992 8 27.05974081363372 33.8037398540133 20.72535752524557 18.41116180710741 9 25.652075401285714 13.975360857260904 22.996459178369445 37.376104563083935 10 16.38862849806077 27.73591779251763 33.78352562764062 22.091928081780985 11 32.10796618226568 22.716792024488093 24.319935669890576 20.85530612335565 12 20.074948131627934 27.662391320766456 31.686355175064087 20.57630537254153 13 30.002132489815143 21.322010404773224 28.219504284971723 20.456352820439918 14 20.909729040512865 22.68569321468397 28.447191999609046 27.957385745194124 15 23.108414893664282 29.182456717120786 26.272496656877948 21.436631732336984 16 21.969754186121936 28.2752600082634 27.08684120503445 22.668144600580213 17 19.952329967257395 27.569094891354084 28.358560391667297 24.12001474972122 18 20.860637347893498 26.58259621749619 31.445117264726395 21.11164916988391 19 20.681152788452568 25.911528328794386 32.26101675337311 21.146302129379933 20 23.384527897853737 25.041650191701947 31.397136243885754 20.176685666558562 21 23.10175086299197 25.847109365628707 30.356881055937873 20.694258715441446 22 22.23809248786036 25.41061535659228 31.048385305368097 21.302906850179262 23 20.96726183865049 26.613917161656058 31.824522744336686 20.59429825535677 24 20.162024799079475 26.4653092776635 30.90088809315426 22.47177783010276 25 21.16118513121476 26.936011977484466 31.277627960495625 20.625174930805148 26 22.084375513685696 26.426213631052608 30.478388548529693 21.011022306732006 27 21.220939272909828 27.214346325231354 30.216047874396352 21.34866652746247 28 20.829982806800864 27.011093389725843 30.437960095784334 21.72096370768896 29 20.07294892242624 26.912465735775626 31.22942480529924 21.785160536498896 30 19.834820893068965 27.203017473088426 32.227252331300065 20.73490930254255 31 20.743128273705068 26.71432189045222 31.536192350581327 21.006357485261383 32 21.25448156062713 26.805841245018634 30.384647850405837 21.55502934394839 33 21.81115025612091 26.726983548729617 30.127638400810348 21.334227794339128 34 20.93993931289401 28.184407056764215 30.042338808204754 20.833314822137023 35 20.138034288659153 28.729746900115067 30.34355299459325 20.78866581663253 36 20.55453620567864 26.56104918498905 31.45955599784974 21.42485861148257 37 20.702477686603967 26.427324302831323 31.1032524912368 21.76694551932791 38 20.622509318536224 26.069243721372438 31.645260319251495 21.662986640839847 39 21.2076112115652 25.836224782197263 31.551741755483388 21.404422250754145 40 20.12426195860304 26.234289547690025 31.29517657459938 22.34627191910755 41 20.38327061740023 26.040810523837237 31.22942480529924 22.3464940534633 42 19.22483995219669 27.049522633269508 31.405133080692526 22.32050433384128 43 19.422095260097116 26.692330589233592 31.1296864795703 22.755887671098986 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 48.0 1 73.0 2 98.0 3 254.5 4 411.0 5 411.0 6 685.5 7 960.0 8 1008.0 9 1056.0 10 1565.5 11 2075.0 12 2075.0 13 3499.5 14 4924.0 15 7836.5 16 10749.0 17 10481.5 18 10214.0 19 10214.0 20 10852.5 21 11491.0 22 9700.5 23 7910.0 24 8885.0 25 9860.0 26 9860.0 27 10729.5 28 11599.0 29 12296.5 30 12994.0 31 13935.5 32 14877.0 33 14877.0 34 16165.0 35 17453.0 36 19222.0 37 20991.0 38 21926.0 39 22861.0 40 22861.0 41 24105.0 42 25349.0 43 27802.0 44 30255.0 45 35052.0 46 39849.0 47 39849.0 48 40327.0 49 40805.0 50 37441.5 51 34078.0 52 31803.5 53 29529.0 54 29529.0 55 26404.0 56 23279.0 57 20498.5 58 17718.0 59 15862.0 60 14006.0 61 14006.0 62 12550.5 63 11095.0 64 9695.0 65 8295.0 66 6973.0 67 5651.0 68 5651.0 69 4732.5 70 3814.0 71 3146.0 72 2478.0 73 2005.5 74 1533.0 75 1533.0 76 1158.5 77 784.0 78 612.0 79 440.0 80 346.0 81 252.0 82 252.0 83 204.5 84 157.0 85 118.5 86 80.0 87 77.0 88 74.0 89 74.0 90 72.5 91 71.0 92 41.5 93 12.0 94 7.0 95 2.0 96 2.0 97 1.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 450178.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 62.32414969846467 #Duplication Level Percentage of deduplicated Percentage of total 1 86.32701728036744 53.802579480035675 2 8.058573742101578 10.044875125177107 3 2.197561961966385 4.108835420677341 4 0.9555873567029213 2.382246778764521 5 0.5091692084695475 1.5866768985252422 6 0.34469485028885727 1.2889688069815568 7 0.23486384408501187 1.0246382564257803 8 0.17429643598744687 0.8690301734712405 9 0.14555666790403418 0.8164526004054663 >10 0.936792217835901 11.118846010506282 >50 0.07439622943975491 3.131766430963423 >100 0.03540974379538887 4.086744533254957 >500 0.004292090157016833 1.9699209862201523 >1k 0.0017883708987570138 3.7684184985913407 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 4891 1.086459133942574 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 4644 1.0315919480738729 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 4181 0.928743741364527 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1652 0.3669659556886387 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 1537 0.34142050477811 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 944 0.20969483182207926 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 930 0.20658495084166706 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 857 0.19036914287237494 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 841 0.1868149931804753 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 794 0.17637467846052005 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 747 0.16593436374056483 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 696 0.15460551159763472 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 679 0.15082922754999134 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 635 0.1410553158972673 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 625 0.13883397233983003 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 565 0.12550591099520636 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 524 0.1163984024097135 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 497 0.11040077480463284 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 468 0.10395887848806472 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 4.442687114874561E-4 0.0 12 0.0 0.0 0.0 8.885374229749122E-4 0.0 13 0.0 0.0 0.0 8.885374229749122E-4 0.0 14 0.0 0.0 0.0 0.0011106717787186403 0.0 15 0.0 0.0 0.0 0.0017770748459498243 0.0 16 0.0 0.0 0.0 0.0037762840476433766 0.0 17 0.0 0.0 0.0 0.006664030672311841 0.0 18 0.0 0.0 0.0 0.007108299383799297 0.0 19 0.0 0.0 0.0 0.008663239874005394 0.0 20 0.0 0.0 0.0 0.009996046008467761 0.0 21 0.0 0.0 0.0 0.012661658277392499 0.0 22 0.0 0.0 0.0 0.019992092016935522 0.0 23 0.0 0.0 0.0 0.029099600602428374 0.0 24 0.0 0.0 0.0 0.04620394599469543 0.0 25 0.0 0.0 0.0 0.05442291715721337 0.0 26 0.0 0.0 0.0 0.0617533508967564 0.0 27 0.0 0.0 0.0 0.13017073246582464 0.0 28 0.0 0.0 0.0 0.21124977231228537 0.0 29 0.0 0.0 0.0 0.31343157595440024 0.0 30 0.0 0.0 0.0 0.5109090182105744 0.0 31 0.0 0.0 0.0 0.8056813082825016 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCATAGC 25 0.0054928353 29.6 1 GCTGCGA 35 8.860982E-4 26.42857 30 GGTATCA 1270 0.0 24.035433 1 TACTCCG 55 1.8993263E-5 23.545454 5 ACGACAT 40 0.0019293724 23.125 27 GCGCGCT 50 2.6985645E-4 22.2 23 TGACGGA 45 0.003822247 20.555555 37 GACGACA 45 0.003822247 20.555555 26 ATTAGAT 80 1.6131129E-5 18.5 3 CTATAGT 50 0.0070283962 18.5 1 TACGACG 50 0.0070283962 18.5 5 TGAACAC 95 3.596535E-6 17.526316 5 ACTCCGT 65 0.0015779166 17.076921 6 TCTATAC 65 0.0015779166 17.076921 3 ATTGGAC 185 1.8189894E-11 16.0 3 GGGTAGA 70 0.0025892104 15.857142 1 TTACAGC 70 0.0025892104 15.857142 4 GTATTGG 130 2.5785448E-7 15.653845 1 AATACCG 120 1.9290437E-6 15.416667 5 TAGCCTC 85 5.355153E-4 15.235294 5 >>END_MODULE