##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088407_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2304333 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.418732448825757 31.0 31.0 34.0 30.0 34.0 2 31.630089487934253 31.0 31.0 34.0 30.0 34.0 3 31.723619806685925 31.0 31.0 34.0 30.0 34.0 4 35.50380565656092 37.0 35.0 37.0 33.0 37.0 5 35.30445599659424 37.0 35.0 37.0 33.0 37.0 6 35.32621023089979 37.0 35.0 37.0 32.0 37.0 7 35.21683150829329 37.0 35.0 37.0 32.0 37.0 8 35.22599641631656 37.0 35.0 37.0 32.0 37.0 9 36.77513579851523 39.0 37.0 39.0 32.0 39.0 10 36.613841836227664 39.0 35.0 39.0 32.0 39.0 11 36.71727870928377 39.0 35.0 39.0 32.0 39.0 12 36.583903020960946 39.0 35.0 39.0 32.0 39.0 13 36.624021788517545 39.0 35.0 39.0 32.0 39.0 14 37.67646125798658 39.0 37.0 41.0 32.0 41.0 15 37.67484039850143 39.0 36.0 41.0 32.0 41.0 16 37.63425034489373 39.0 36.0 41.0 32.0 41.0 17 37.64070600907074 39.0 36.0 41.0 32.0 41.0 18 37.59592124922917 39.0 36.0 41.0 32.0 41.0 19 37.64407184204713 39.0 37.0 41.0 32.0 41.0 20 37.59853588869317 39.0 36.0 41.0 32.0 41.0 21 37.54702770823488 39.0 36.0 41.0 32.0 41.0 22 37.4399190568377 39.0 36.0 41.0 32.0 41.0 23 37.34552167590361 39.0 36.0 41.0 31.0 41.0 24 37.27350387292115 39.0 36.0 41.0 31.0 41.0 25 37.20707553986338 39.0 36.0 41.0 31.0 41.0 26 36.99729119011879 39.0 36.0 41.0 31.0 41.0 27 36.84561519537324 39.0 35.0 40.0 30.0 41.0 28 36.74678833310984 39.0 35.0 40.0 30.0 41.0 29 36.61645777758683 39.0 35.0 40.0 30.0 41.0 30 36.45579740428141 38.0 35.0 40.0 30.0 41.0 31 36.28796706031637 38.0 35.0 40.0 30.0 41.0 32 36.13420629744052 38.0 35.0 40.0 30.0 41.0 33 36.26853540699196 38.0 35.0 40.0 30.0 41.0 34 36.286076708531276 38.0 35.0 40.0 30.0 41.0 35 36.251806054072915 38.0 35.0 40.0 30.0 41.0 36 36.19789934874864 38.0 35.0 40.0 30.0 41.0 37 36.10252120678739 38.0 35.0 40.0 29.0 41.0 38 36.01401316563188 38.0 35.0 40.0 29.0 41.0 39 36.00541501597208 38.0 35.0 40.0 29.0 41.0 40 35.90786097321872 38.0 35.0 40.0 28.0 41.0 41 35.8164644606487 38.0 35.0 40.0 27.0 41.0 42 35.730472548889416 38.0 35.0 40.0 27.0 41.0 43 35.410155129488665 38.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 0.0 13 0.0 14 4.0 15 5.0 16 29.0 17 67.0 18 158.0 19 298.0 20 707.0 21 1299.0 22 2388.0 23 4142.0 24 7165.0 25 10973.0 26 17292.0 27 24899.0 28 34945.0 29 47357.0 30 62057.0 31 78042.0 32 96256.0 33 118462.0 34 146729.0 35 180614.0 36 227719.0 37 305069.0 38 428091.0 39 509564.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.1999914942849 21.59132382342309 12.88090740357405 24.327777278717964 2 18.382846576427973 22.938872116139464 34.87486400620049 23.80341730123207 3 19.369205752814374 25.777567738690543 31.201132822382878 23.65209368611221 4 13.592219527299223 16.727183093762925 36.60317323928442 33.07742413965343 5 13.0781011251412 38.64385051986844 34.67463252923948 13.603415825750877 6 31.728964520318897 37.49206386403354 16.27807265703351 14.500898958614055 7 26.007872994050775 33.1511981992186 22.86531503910242 17.975613767628204 8 26.546206646348423 33.89883319815322 20.764229822686218 18.790730332812142 9 25.992771010092724 14.008435412763692 21.92369766001702 38.07509591712656 10 16.089818615625433 27.389878112234644 34.35892295080615 22.161380321333766 11 33.58945950954138 22.846524352166114 23.376786254417222 20.18722988387529 12 20.19317520514613 27.020530452846874 31.42796635729298 21.358327984714016 13 29.347754860083157 21.319444715672606 26.944629964506 22.38817045973824 14 21.372084676997638 22.252990344711463 27.532912994779835 28.842011983511064 15 23.73033758575692 29.349534116813846 24.463564944823514 22.45656335260572 16 23.018548100469854 27.876179354286034 26.107554767475012 22.997717777769097 17 21.300567235725048 27.68927060455238 27.380895035569946 23.629267124152626 18 21.725028457258563 26.64133178668187 29.390326832102826 22.243312923956736 19 21.839421646090212 26.37032060904392 30.047089548255396 21.743168196610473 20 23.22194752234161 25.86670416124753 29.201118067570963 21.710230248839903 21 23.356086121233346 26.318288198797656 28.6376144420099 21.6880112379591 22 22.877943422239756 26.184930737007196 29.11614770955413 21.82097813119892 23 22.10535543256986 26.560527493205193 29.283441238744572 22.050675835480376 24 21.708060423558575 26.764534466155716 28.879723546900554 22.647681563385152 25 22.46519925722541 26.703258600210994 29.060947354397133 21.770594788166466 26 22.539016713296213 26.855102973398377 28.624074732254414 21.981805581051002 27 22.36499672573365 26.93738274806636 28.51224193725473 22.185378588945262 28 21.889804989122666 27.02829842735403 28.915308681514347 22.166587902008956 29 21.56394062837272 26.817998961087657 29.28647899413843 22.33158141640119 30 21.44247380912394 27.32586826643545 29.479333065142928 21.75232485929768 31 22.134170712305902 27.00929075788959 28.906802966411536 21.949735563392963 32 22.098411991669607 27.034764506692394 28.5659234147148 22.3009000869232 33 22.27277915127718 26.93720916204385 28.524436355335798 22.26557533134317 34 22.27086970502961 27.226880837101238 28.63856916513369 21.86368029273547 35 21.890803108752078 27.37238932046714 28.95128438467878 21.78552318610201 36 21.783960911899452 26.855146369904006 29.12664966391576 22.234243054280782 37 21.92230897183697 26.45416265791446 29.194218023176337 22.429310347072235 38 21.569061416036657 26.488706276393216 29.554842984933167 22.387389322636963 39 22.091381757758104 25.988431359530068 29.605530103505007 22.314656779206825 40 21.544932958908284 26.158589058091863 29.772172685111048 22.5243052978888 41 21.256519782514072 25.892047720533444 30.05694055503263 22.794491941919855 42 20.676568881320538 26.513225302072225 30.02222335053137 22.787982466075867 43 20.679042482141252 25.89469490737667 30.13882976114997 23.287432849332106 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 219.0 1 347.5 2 476.0 3 1126.5 4 1777.0 5 1777.0 6 2728.5 7 3680.0 8 3668.5 9 3657.0 10 5449.0 11 7241.0 12 7241.0 13 11679.5 14 16118.0 15 24527.0 16 32936.0 17 33199.0 18 33462.0 19 33462.0 20 37307.5 21 41153.0 22 37154.5 23 33156.0 24 38710.5 25 44265.0 26 44265.0 27 51689.5 28 59114.0 29 64127.5 30 69141.0 31 74990.5 32 80840.0 33 80840.0 34 90091.0 35 99342.0 36 108655.0 37 117968.0 38 124983.5 39 131999.0 40 131999.0 41 139060.5 42 146122.0 43 152916.0 44 159710.0 45 170525.0 46 181340.0 47 181340.0 48 183630.5 49 185921.0 50 174660.0 51 163399.0 52 155211.0 53 147023.0 54 147023.0 55 136788.5 56 126554.0 57 116916.0 58 107278.0 59 98412.0 60 89546.0 61 89546.0 62 79103.5 63 68661.0 64 59881.5 65 51102.0 66 43410.0 67 35718.0 68 35718.0 69 30065.0 70 24412.0 71 20878.0 72 17344.0 73 13776.0 74 10208.0 75 10208.0 76 7741.5 77 5275.0 78 4229.0 79 3183.0 80 2624.5 81 2066.0 82 2066.0 83 1569.0 84 1072.0 85 883.5 86 695.0 87 652.5 88 610.0 89 610.0 90 520.5 91 431.0 92 249.5 93 68.0 94 54.0 95 40.0 96 40.0 97 24.5 98 9.0 99 5.5 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2304333.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 47.797572647450146 #Duplication Level Percentage of deduplicated Percentage of total 1 74.56962434060429 35.642470367131004 2 13.49855903798618 12.903967125080781 3 4.990889473008941 7.15657206484617 4 2.3119557807882014 4.420234975596655 5 1.187408720368748 2.8377627287020526 6 0.753860639496938 2.161962520944487 7 0.4736395519922421 1.5847174626538452 8 0.3461300318938393 1.3235340275928014 9 0.2472201519839017 1.0634870856927787 >10 1.3687832742353148 12.298303161070113 >50 0.1439305215257337 4.810207722745448 >100 0.1010077426701762 9.002347813466319 >500 0.005174958524566678 1.656033000499258 >1k 0.0014526199367204608 1.1307387425713782 >5k 9.07887460450288E-5 0.2306434515395815 >10k+ 2.723662381350864E-4 1.777017749867519 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 14720 0.6387965628231683 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 13991 0.6071605102213959 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 12239 0.5311298323636384 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5315 0.23065242740524047 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 3474 0.15075946054671785 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 4.339650562657394E-5 0.0 8 4.339650562657394E-5 0.0 0.0 4.339650562657394E-5 0.0 9 4.339650562657394E-5 0.0 0.0 4.339650562657394E-5 0.0 10 4.339650562657394E-5 0.0 0.0 4.339650562657394E-5 0.0 11 4.339650562657394E-5 0.0 0.0 8.679301125314788E-5 0.0 12 4.339650562657394E-5 0.0 0.0 2.169825281328697E-4 0.0 13 4.339650562657394E-5 0.0 0.0 2.169825281328697E-4 0.0 14 4.339650562657394E-5 0.0 0.0 5.207580675188873E-4 0.0 15 4.339650562657394E-5 0.0 0.0 6.94344090025183E-4 0.0 16 4.339650562657394E-5 0.0 0.0 9.547231237846266E-4 0.0 17 4.339650562657394E-5 0.0 0.0 0.0014320846856769398 0.0 18 4.339650562657394E-5 0.0 0.0 0.0014754811913035139 0.0 19 4.339650562657394E-5 0.0 0.0 0.0016924637194363835 0.0 20 4.339650562657394E-5 0.0 0.0 0.0023000147982084186 0.0 21 4.339650562657394E-5 0.0 0.0 0.0029509623826070278 0.0 22 4.339650562657394E-5 0.0 0.0 0.0042962540570308195 0.0 23 4.339650562657394E-5 0.0 0.0 0.006900044394625256 0.0 24 4.339650562657394E-5 0.0 0.0 0.011152901946029501 0.0 25 4.339650562657394E-5 0.0 0.0 0.015709535036819766 4.339650562657394E-5 26 4.339650562657394E-5 0.0 0.0 0.024649215195893998 4.339650562657394E-5 27 4.339650562657394E-5 0.0 0.0 0.08002315637540235 4.339650562657394E-5 28 4.339650562657394E-5 0.0 0.0 0.1375669228362394 4.339650562657394E-5 29 4.339650562657394E-5 0.0 0.0 0.2006220455116513 4.339650562657394E-5 30 4.339650562657394E-5 0.0 0.0 0.298741544733335 4.339650562657394E-5 31 4.339650562657394E-5 0.0 0.0 0.4717200161608587 4.339650562657394E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 4220 0.0 23.497631 1 TATACCG 180 0.0 19.527779 5 CGCATAC 85 2.7250382E-5 17.411764 37 TATACTG 365 0.0 16.726027 5 ACGTTTA 155 4.0199666E-10 16.709679 26 CGGGATA 135 2.2224413E-8 16.444445 24 TACGTTA 105 9.3511735E-6 15.857142 19 CTAGTAC 235 0.0 15.744679 3 CGTACGA 120 1.9374584E-6 15.416666 12 GTATCAA 6510 0.0 15.260368 2 ATCACGT 170 1.4879333E-9 15.235294 23 CCCGTAT 85 5.367055E-4 15.235294 1 ATACCGA 305 0.0 15.163935 6 GTACTAG 235 0.0 14.957446 1 TAGTGCG 75 0.0041060694 14.8 7 TACCGAC 225 1.8189894E-12 14.8 7 ACCGACC 290 0.0 14.672415 8 CAATGCG 165 1.6474587E-8 14.575759 19 CGAATTA 90 8.278461E-4 14.388889 15 TAGTACT 285 0.0 14.280702 4 >>END_MODULE