##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088406_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3351786 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.417968211574365 31.0 31.0 34.0 30.0 34.0 2 31.628446147814927 31.0 31.0 34.0 30.0 34.0 3 31.724022058687517 31.0 31.0 34.0 30.0 34.0 4 35.501907042991405 37.0 35.0 37.0 33.0 37.0 5 35.30548668679922 37.0 35.0 37.0 33.0 37.0 6 35.32693316339408 37.0 35.0 37.0 32.0 37.0 7 35.21554747230282 37.0 35.0 37.0 32.0 37.0 8 35.228975537221054 37.0 35.0 37.0 32.0 37.0 9 36.770189683947606 39.0 37.0 39.0 32.0 39.0 10 36.61567325598949 39.0 35.0 39.0 32.0 39.0 11 36.71509577282082 39.0 35.0 39.0 32.0 39.0 12 36.587320013867235 39.0 35.0 39.0 32.0 39.0 13 36.623732839745735 39.0 35.0 39.0 32.0 39.0 14 37.680113527534274 39.0 37.0 41.0 32.0 41.0 15 37.67341411414691 39.0 36.0 41.0 32.0 41.0 16 37.63614443165524 39.0 36.0 41.0 32.0 41.0 17 37.648871079478226 39.0 36.0 41.0 32.0 41.0 18 37.61212141825283 39.0 36.0 41.0 32.0 41.0 19 37.654121713021055 40.0 37.0 41.0 32.0 41.0 20 37.60669237236506 39.0 37.0 41.0 32.0 41.0 21 37.56032515202343 39.0 36.0 41.0 32.0 41.0 22 37.44378847575591 39.0 36.0 41.0 32.0 41.0 23 37.35004024719955 39.0 36.0 41.0 31.0 41.0 24 37.28296108403102 39.0 36.0 41.0 31.0 41.0 25 37.22177101998755 39.0 36.0 41.0 31.0 41.0 26 37.02024920445398 39.0 36.0 41.0 31.0 41.0 27 36.85855093374099 39.0 35.0 40.0 30.0 41.0 28 36.762039998973684 39.0 35.0 40.0 30.0 41.0 29 36.629482908515044 39.0 35.0 40.0 30.0 41.0 30 36.477261078123725 38.0 35.0 40.0 30.0 41.0 31 36.30405521116205 38.0 35.0 40.0 30.0 41.0 32 36.15951525544889 38.0 35.0 40.0 30.0 41.0 33 36.28156869203463 38.0 35.0 40.0 30.0 41.0 34 36.287313092184284 38.0 35.0 40.0 30.0 41.0 35 36.2523568032088 38.0 35.0 40.0 30.0 41.0 36 36.197103574034855 38.0 35.0 40.0 30.0 41.0 37 36.09698769551517 38.0 35.0 40.0 29.0 41.0 38 36.01205088869039 38.0 35.0 40.0 29.0 41.0 39 36.00204786343758 38.0 35.0 40.0 29.0 41.0 40 35.90694125460277 38.0 35.0 40.0 28.0 41.0 41 35.81534650481863 38.0 35.0 40.0 27.0 41.0 42 35.714337072832215 38.0 35.0 40.0 27.0 41.0 43 35.40204923584024 38.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 0.0 13 1.0 14 4.0 15 11.0 16 31.0 17 95.0 18 196.0 19 464.0 20 999.0 21 1931.0 22 3620.0 23 6251.0 24 10503.0 25 16456.0 26 25035.0 27 36713.0 28 51503.0 29 69899.0 30 90498.0 31 113698.0 32 139867.0 33 170857.0 34 210306.0 35 259159.0 36 328746.0 37 440809.0 38 620278.0 39 753855.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.409475425937096 21.429948093344862 12.790882234128311 24.36969424658973 2 18.245735258754586 22.729374727384148 35.219014579093056 23.805875434768208 3 19.434564139834702 25.651697333899005 31.12066223798297 23.79307628828332 4 13.516435715167974 16.321507399338742 36.35709439683799 33.804962488655306 5 12.874091603700236 38.693520409715894 34.77059692951758 13.661791057066292 6 32.08405906582342 37.062777874243764 16.053680038045385 14.799483021887436 7 26.220230050486514 33.165333347654055 22.503017794095445 18.11141880776398 8 26.781811249286203 33.93214841281633 20.68142178528104 18.604618552616426 9 26.13830357904711 13.854852308590107 21.78265557526644 38.224188537096346 10 16.092674174305877 27.01183786793071 34.41556233005329 22.479925627710124 11 33.66351551083512 22.255985316485003 23.649302192920434 20.43119697975945 12 20.35920551013698 26.62088212075592 31.454185917597364 21.565726451509732 13 29.819863201290296 20.887461192331493 27.14949582103392 22.14317978534429 14 21.283846880439263 21.996601214994037 27.38357997795802 29.33597192660868 15 23.662340018127647 29.048543075244066 24.71709112693949 22.572025779688797 16 23.0089570157522 27.89805196393803 25.9384996536175 23.154491366692266 17 21.236528823737554 27.232138328640314 27.30007225998318 24.231260587638946 18 21.946866536228747 26.395688746238573 29.51799428722478 22.139450430307903 19 21.84140037579965 25.878919477556146 30.124387416141722 22.155292730502484 20 23.798565898896886 25.354781003321815 29.273050248434718 21.57360284934659 21 23.717325628784177 25.961054792877587 28.600543113432657 21.721076464905575 22 23.115706074313813 25.56983053214018 29.20174498013895 22.112718413407062 23 22.292891013925114 26.226555036628234 29.53377691773878 21.94677703170787 24 21.81690597192064 26.17867011796099 28.910109416293285 23.09431449382508 25 22.49248609547268 26.400163972282243 29.174654945154614 21.932694987090464 26 22.828008709386577 26.32718795293017 28.638701874164994 22.206101463518255 27 22.49290378323676 26.735835760397592 28.477086544308023 22.294173912057634 28 22.158485058413635 26.439098438862146 28.822126472274785 22.580290030449437 29 21.540963534068105 26.508016919934622 29.400266007436038 22.55075353856123 30 21.47189587879417 26.789001445796362 29.830007046989277 21.909095628420193 31 22.173521817920356 26.475049421412944 29.296977790348187 22.054450970318513 32 22.428460528207946 26.397628010857492 28.512291655851534 22.66161980508302 33 22.548247411976778 26.36886722481686 28.58291072282061 22.49997464038575 34 22.322069487729827 27.098299235094363 28.65499169696395 21.924639580211863 35 21.901875597069743 27.425796276969947 28.918045483810722 21.75428264214959 36 21.939348156475383 26.425732430411724 29.309329414228714 22.325589998884176 37 22.09052129223047 25.994559318524512 29.264875502194947 22.650043887050067 38 21.94442007932487 25.862838498639235 29.668212708090554 22.52452871394534 39 22.3695068837927 25.550229042068917 29.698465236145744 22.38179883799264 40 21.679277853657723 25.645879540042234 29.671763054085194 23.00307955221485 41 21.608569282167775 25.550199207228623 29.892123184475384 22.94910832612822 42 20.926067475668194 26.332707398384024 29.87920469862933 22.86202042731845 43 20.89008665827711 25.80298980901525 29.815029957163137 23.491893575544502 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 282.0 1 412.0 2 542.0 3 1432.0 4 2322.0 5 2322.0 6 3551.0 7 4780.0 8 4902.0 9 5024.0 10 7385.5 11 9747.0 12 9747.0 13 16469.5 14 23192.0 15 35736.5 16 48281.0 17 48877.0 18 49473.0 19 49473.0 20 55569.0 21 61665.0 22 55942.5 23 50220.0 24 57400.0 25 64580.0 26 64580.0 27 72337.0 28 80094.0 29 87129.0 30 94164.0 31 103636.0 32 113108.0 33 113108.0 34 125738.0 35 138368.0 36 151524.5 37 164681.0 38 174372.5 39 184064.0 40 184064.0 41 193301.0 42 202538.0 43 213922.5 44 225307.0 45 247937.0 46 270567.0 47 270567.0 48 273985.5 49 277404.0 50 260336.0 51 243268.0 52 232368.5 53 221469.0 54 221469.0 55 204914.0 56 188359.0 57 171479.0 58 154599.0 59 142467.5 60 130336.0 61 130336.0 62 117077.0 63 103818.0 64 91618.0 65 79418.0 66 67919.5 67 56421.0 68 56421.0 69 47765.5 70 39110.0 71 33496.5 72 27883.0 73 21754.5 74 15626.0 75 15626.0 76 12043.5 77 8461.0 78 6736.5 79 5012.0 80 4094.5 81 3177.0 82 3177.0 83 2424.5 84 1672.0 85 1429.5 86 1187.0 87 1003.0 88 819.0 89 819.0 90 709.0 91 599.0 92 342.5 93 86.0 94 65.5 95 45.0 96 45.0 97 27.5 98 10.0 99 9.0 100 8.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3351786.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 47.50499099534945 #Duplication Level Percentage of deduplicated Percentage of total 1 74.1761454948933 35.23737123804637 2 13.769196204721961 13.082110834370333 3 5.054085352735516 7.202828375142848 4 2.326488016639961 4.420791691250789 5 1.2586645526059481 2.9896424118855554 6 0.7301179262106706 2.0810547306108673 7 0.49368248208634147 1.641666730625139 8 0.34513157985655424 1.311637807463707 9 0.24589999137104376 1.0513329188254146 >10 1.3896231115893969 12.129525863251157 >50 0.11533779878523272 3.8064409920441125 >100 0.08556535869877649 7.869570728076983 >500 0.007043490864285693 2.3751590109508633 >1k 0.002704197384640683 2.4169243815346424 >5k 1.2577662254142712E-4 0.4833191511163947 >10k+ 1.8866493381214066E-4 1.900623134804915 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 22677 0.6765646732816475 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 21341 0.6367053266527158 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 19601 0.5847927045461733 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 8269 0.24670429436724184 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7909 0.2359637518624399 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 4369 0.13034841723188773 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 4283 0.1277826209668517 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 4030 0.12023440637319925 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3942 0.11760894042758101 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 3534 0.10543632558880549 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 5.966968058223288E-5 0.0 5 0.0 0.0 0.0 5.966968058223288E-5 0.0 6 0.0 0.0 0.0 8.950452087334931E-5 0.0 7 0.0 0.0 0.0 1.1933936116446576E-4 0.0 8 0.0 0.0 0.0 2.0884388203781505E-4 0.0 9 0.0 0.0 0.0 3.281832432022808E-4 0.0 10 0.0 0.0 0.0 3.878529237845137E-4 0.0 11 0.0 0.0 0.0 4.4752260436674654E-4 0.0 12 0.0 0.0 0.0 5.370271252400959E-4 0.0 13 0.0 0.0 0.0 5.966968058223288E-4 0.0 14 0.0 0.0 0.0 7.45871007277911E-4 0.0 15 0.0 0.0 0.0 9.248800490246096E-4 0.0 16 0.0 0.0 0.0 0.001223228451935774 0.0 17 0.0 0.0 0.0 0.0016409162160114042 0.0 18 0.0 0.0 0.0 0.0018199252577581026 0.0 19 0.0 0.0 0.0 0.001998934299504801 0.0 20 0.0 0.0 0.0 0.002446456903871548 0.0 21 0.0 0.0 0.0 0.0034906763140606233 0.0 22 0.0 0.0 0.0 0.0052210970509453765 0.0 23 0.0 0.0 0.0 0.009069791448499396 0.0 24 0.0 0.0 0.0 0.015961639555747295 0.0 25 0.0 0.0 0.0 0.02070537916203481 0.0 26 0.0 0.0 0.0 0.028372933116851733 0.0 27 0.0 0.0 0.0 0.0885796408243247 0.0 28 0.0 0.0 0.0 0.15269471260993392 0.0 29 0.0 0.0 0.0 0.2231049356969687 0.0 30 0.0 0.0 0.0 0.3390729599085383 0.0 31 0.0 0.0 0.0 0.5407863151167766 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5510 0.0 28.136116 1 GTATTGG 720 0.0 16.70139 1 CGTATAC 145 2.9849616E-9 16.586206 3 TATACTG 515 0.0 16.524273 5 GTATCAA 9575 0.0 16.13316 2 ACGTTTA 220 0.0 15.977273 26 ATTGGAC 760 0.0 14.848684 3 ACTACGC 100 1.09435736E-4 14.799999 8 CCCGTAT 115 2.2122329E-5 14.478261 1 ACGGACC 525 0.0 14.4476185 8 TCTATAC 315 0.0 14.095239 3 CGAATTA 215 1.9826984E-10 13.767442 15 CAAACGT 135 6.575492E-6 13.703703 4 TTGGACC 1305 0.0 13.467434 4 GAACCGT 180 5.1682946E-8 13.361112 6 AAGACGG 605 0.0 13.14876 5 ACCCTCG 1045 0.0 13.100479 8 GACGGAC 595 0.0 13.058824 7 GGACCCT 1205 0.0 12.896265 6 TTATACT 720 0.0 12.847222 4 >>END_MODULE