##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088405_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2758010 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.376262957712264 31.0 31.0 34.0 30.0 34.0 2 31.57292286829997 31.0 31.0 34.0 30.0 34.0 3 31.647456318142428 31.0 31.0 34.0 30.0 34.0 4 35.43942516524596 37.0 35.0 37.0 33.0 37.0 5 35.26716690657394 37.0 35.0 37.0 33.0 37.0 6 35.30306416582971 37.0 35.0 37.0 32.0 37.0 7 35.18586988444567 37.0 35.0 37.0 32.0 37.0 8 35.220808118897324 37.0 35.0 37.0 32.0 37.0 9 36.714741425883155 39.0 35.0 39.0 32.0 39.0 10 36.58690468852542 39.0 35.0 39.0 32.0 39.0 11 36.69202649736585 39.0 35.0 39.0 32.0 39.0 12 36.565234716335326 39.0 35.0 39.0 32.0 39.0 13 36.60999488761825 39.0 35.0 39.0 32.0 39.0 14 37.61309313599298 39.0 36.0 41.0 32.0 41.0 15 37.603521742125665 39.0 36.0 41.0 32.0 41.0 16 37.55340988611354 39.0 36.0 41.0 32.0 41.0 17 37.62069753191613 39.0 36.0 41.0 32.0 41.0 18 37.600471716926336 39.0 36.0 41.0 32.0 41.0 19 37.66680541404853 39.0 37.0 41.0 32.0 41.0 20 37.62857495077973 39.0 37.0 41.0 32.0 41.0 21 37.58179919579697 39.0 36.0 41.0 32.0 41.0 22 37.4703496361507 39.0 36.0 41.0 32.0 41.0 23 37.36890112798721 39.0 36.0 41.0 32.0 41.0 24 37.30485277428291 39.0 36.0 41.0 31.0 41.0 25 37.241863517536196 39.0 36.0 41.0 31.0 41.0 26 37.012435777970346 39.0 36.0 41.0 31.0 41.0 27 36.84287076551571 39.0 35.0 40.0 31.0 41.0 28 36.72422942628924 39.0 35.0 40.0 30.0 41.0 29 36.57521401300213 38.0 35.0 40.0 30.0 41.0 30 36.39530748619476 38.0 35.0 40.0 30.0 41.0 31 36.158823572068265 38.0 35.0 40.0 30.0 41.0 32 36.02388751309821 38.0 35.0 40.0 30.0 41.0 33 36.07282932259129 38.0 35.0 40.0 30.0 41.0 34 36.044145960311965 38.0 35.0 40.0 30.0 41.0 35 35.95983118262805 38.0 35.0 40.0 29.0 41.0 36 35.877578036337795 38.0 35.0 40.0 29.0 41.0 37 35.74410716422348 38.0 35.0 40.0 28.0 41.0 38 35.626413247232605 38.0 35.0 40.0 27.0 41.0 39 35.55086384748424 38.0 34.0 40.0 27.0 41.0 40 35.3890196192182 38.0 34.0 40.0 26.0 41.0 41 35.25207812879576 38.0 34.0 40.0 25.0 41.0 42 35.08583870254277 38.0 34.0 40.0 24.0 41.0 43 34.750286982280706 38.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 5.0 15 4.0 16 28.0 17 66.0 18 155.0 19 384.0 20 897.0 21 1727.0 22 3188.0 23 5510.0 24 9324.0 25 14702.0 26 22298.0 27 32272.0 28 46014.0 29 61891.0 30 79120.0 31 97265.0 32 118841.0 33 145166.0 34 178650.0 35 216848.0 36 275682.0 37 375939.0 38 494935.0 39 577098.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.05634134756582 22.563152417866505 13.766810127591997 22.61369610697568 2 18.020493036645988 23.2270731433171 35.93271960580273 22.81971421423418 3 19.822299411532228 26.113755932719606 32.25187725932828 21.81206739641988 4 13.063223121018416 16.264516807408242 35.98717916178694 34.6850809097864 5 11.731647093375296 40.109898078687166 34.63421089843764 13.524243929499894 6 31.1130489012005 36.85225941892887 15.836925899470996 16.197765780399635 7 24.69516064118694 34.9476615385731 22.01587376405452 18.341304056185436 8 27.325245376195156 33.56318505009047 20.618163095855348 18.493406477859036 9 25.56089354280804 13.720073531277988 23.47660088252037 37.242432043393606 10 16.309875598710665 27.674809010844776 34.04490919177233 21.970406198672233 11 31.82765834786676 22.260796733876962 24.7469008451746 21.16464407308168 12 20.103226601788972 27.568645508899532 31.816744681853947 20.511383207457552 13 30.456452297127278 21.154092987335073 28.492935123512968 19.896519592024685 14 20.883100496372382 22.69085318762441 28.614725834931708 27.8113204810715 15 23.04705204114561 29.220669975815895 26.583442409563418 21.14883557347508 16 21.820805580835454 28.31091982987734 27.356826117381733 22.511448471905467 17 19.670922150391043 27.283911225847625 28.279266572637518 24.76590005112382 18 20.68766973288712 26.47321800863666 31.88447467558131 20.954637582894915 19 20.11667832966523 25.35059698840831 33.150351158987824 21.382373522938643 20 23.708108382493172 24.49657542938568 31.919644961403332 19.875671226717813 21 23.227979593982617 25.264157852944695 30.995101540603553 20.512761012469134 22 21.949992929684807 24.919561567942104 31.85709986548272 21.27334563689037 23 21.012469135354838 26.327932095967743 32.64273878629882 20.016859982378598 24 19.96798416249397 25.84454008506133 31.414389360444666 22.77308639200003 25 21.014608358925457 26.500339012548903 32.158984195126195 20.326068433399445 26 22.01261054165866 25.81237921544882 31.069212947016144 21.105797295876375 27 20.987958709359283 26.919264252123813 30.73625548855878 21.35652154995812 28 20.70021501009786 26.524378084198393 30.995971733242445 21.779435172461305 29 19.875163614345126 26.54812709163491 31.816454617640982 21.760254676378985 30 19.49427304469527 26.798706313610175 33.153324317170714 20.55369632452384 31 20.613594584501143 26.262015003571413 32.246764877574776 20.877625534352667 32 21.467144789177702 26.38761280778532 30.68404393022505 21.46119847281192 33 22.007425643851906 26.370644051326863 30.348910990170445 21.27301931465078 34 20.894594290811128 28.379737564403317 30.393000750541148 20.3326673942444 35 19.88049354425836 29.08724043785193 30.648075967817373 20.384190050072334 36 20.52871454418222 26.42452347888514 32.03958651346442 21.007175463468226 37 20.69173063186863 26.399868020783103 31.467652401550396 21.44074894579788 38 20.756850047679304 26.1316673978702 31.88179158161138 21.229690972839112 39 21.564135010387925 25.740443290633465 31.851008517010452 20.844413181968157 40 20.151957389567116 26.239933865359443 31.412902781353225 22.19520596372022 41 20.845863503032984 25.803604773006622 31.29713090235351 22.053400821606882 42 19.00660258664762 27.22698612405321 31.586397438732998 22.18001385056617 43 19.472554486749505 26.849286260745973 31.22523123556477 22.45292801693975 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 238.0 1 337.5 2 437.0 3 1268.5 4 2100.0 5 2100.0 6 3562.5 7 5025.0 8 5530.5 9 6036.0 10 8829.0 11 11622.0 12 11622.0 13 20886.0 14 30150.0 15 48773.0 16 67396.0 17 65836.5 18 64277.0 19 64277.0 20 69934.5 21 75592.0 22 62628.5 23 49665.0 24 55414.0 25 61163.0 26 61163.0 27 66195.5 28 71228.0 29 75317.0 30 79406.0 31 85829.5 32 92253.0 33 92253.0 34 100098.5 35 107944.0 36 117356.0 37 126768.0 38 131327.5 39 135887.0 40 135887.0 41 142994.5 42 150102.0 43 165843.0 44 181584.0 45 217584.0 46 253584.0 47 253584.0 48 257200.0 49 260816.0 50 237437.0 51 214058.0 52 201765.5 53 189473.0 54 189473.0 55 166897.5 56 144322.0 57 122974.0 58 101626.0 59 90171.0 60 78716.0 61 78716.0 62 69842.5 63 60969.0 64 53456.5 65 45944.0 66 39311.5 67 32679.0 68 32679.0 69 27491.0 70 22303.0 71 18824.5 72 15346.0 73 11892.0 74 8438.0 75 8438.0 76 6460.0 77 4482.0 78 3530.0 79 2578.0 80 2148.5 81 1719.0 82 1719.0 83 1277.0 84 835.0 85 687.5 86 540.0 87 465.5 88 391.0 89 391.0 90 319.0 91 247.0 92 144.0 93 41.0 94 30.0 95 19.0 96 19.0 97 13.5 98 8.0 99 5.5 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2758010.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.52019783657368 #Duplication Level Percentage of deduplicated Percentage of total 1 73.74308493010034 31.355705603071215 2 13.733590420880597 11.679099634046324 3 5.135182834908203 6.550469702018223 4 2.4091432495663354 4.097489903528263 5 1.307909116885799 2.7806277201121277 6 0.8070147871824347 2.0588657044822516 7 0.49275545726618136 1.466644166960655 8 0.35272405103504567 1.1998317145382285 9 0.2571546856010379 0.9840841295722232 >10 1.4859967815942061 11.967884090832587 >50 0.1561292465349808 4.628087064371158 >100 0.10567041465628804 8.510952676406157 >500 0.007333662786269499 2.16217008463796 >1k 0.005201784069330083 4.3009167506732 >5k 6.822011894203388E-4 1.9301477074917022 >10k+ 4.263757433877118E-4 4.327023347257848 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 33416 1.2115982175554114 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 32031 1.1613808506858205 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 28681 1.039916461506666 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 14143 0.512797270495756 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11065 0.4011950645574164 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 7683 0.2785704185264013 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 7617 0.2761773887694388 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 7599 0.27552474429026724 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 7196 0.26091275956214804 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 6185 0.22425589464867787 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 5937 0.21526390404675833 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 5571 0.20199346630360293 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 5444 0.19738869692278127 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 4548 0.16490150507068502 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4250 0.15409661313773337 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 4223 0.153117646418976 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 4078 0.14786023255898276 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 3990 0.14466952621636614 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 3399 0.12324103248356605 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 3019 0.10946298236772165 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2958 0.10725124274386243 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 3.6258026620643147E-5 0.0 2 0.0 0.0 0.0 3.6258026620643147E-5 0.0 3 0.0 0.0 0.0 3.6258026620643147E-5 0.0 4 0.0 0.0 0.0 1.4503210648257259E-4 0.0 5 0.0 0.0 0.0 1.4503210648257259E-4 0.0 6 0.0 0.0 0.0 1.4503210648257259E-4 0.0 7 0.0 0.0 0.0 1.4503210648257259E-4 0.0 8 0.0 0.0 0.0 1.4503210648257259E-4 0.0 9 0.0 0.0 0.0 1.8129013310321573E-4 0.0 10 0.0 0.0 0.0 2.1754815972385887E-4 0.0 11 0.0 0.0 0.0 5.076123726890041E-4 0.0 12 0.0 0.0 0.0 6.889025057922198E-4 0.0 13 0.0 0.0 0.0 7.251605324128629E-4 0.0 14 0.0 0.0 0.0 0.0010152247453780081 0.0 15 0.0 0.0 0.0 0.0013415469849637964 0.0 16 0.0 0.0 0.0 0.00195793343751473 0.0 17 0.0 0.0 0.0 0.002501803836824377 0.0 18 0.0 0.0 0.0 0.002973158182892738 0.0 19 0.0 0.0 0.0 0.0034445125289610987 0.0 20 0.0 0.0 0.0 0.00449599530095975 0.0 21 0.0 0.0 0.0 0.006743992951439625 0.0 22 0.0 0.0 0.0 0.009934699294056222 0.0 23 0.0 0.0 0.0 0.01533714526053205 0.0 24 0.0 0.0 0.0 0.024727974155278623 0.0 25 0.0 0.0 0.0 0.030819322627546674 0.0 26 0.0 0.0 0.0 0.04035518362877582 0.0 27 0.0 0.0 0.0 0.10725124274386243 0.0 28 0.0 0.0 0.0 0.17668536372239405 0.0 29 0.0 0.0 0.0 0.2553652814891897 0.0 30 0.0 0.0 0.0 0.39521249016501026 0.0 31 0.0 0.0 0.0 0.6024996283552272 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7530 0.0 28.646744 1 GTATTGG 800 0.0 18.731249 1 ATTGGAC 805 0.0 17.925467 3 TTGGACC 1375 0.0 17.221819 4 GTATCAA 12800 0.0 16.910154 2 CGTCTGT 625 0.0 16.872002 34 TATACCG 230 0.0 16.086956 5 CCGTGCA 150 4.6784407E-9 16.033333 9 GGACCCT 1305 0.0 16.019157 6 TGCGACG 105 9.352507E-6 15.857142 22 CGCACTA 130 2.5926056E-7 15.653846 29 ACGAACG 220 1.8189894E-12 15.136364 15 TGGACCC 1475 0.0 14.674576 5 GCGCACT 140 6.003138E-7 14.535715 28 TGCGACA 115 2.2119524E-5 14.47826 19 ACGTTTA 205 9.276846E-11 14.439025 26 GTCCCGT 90 8.279193E-4 14.388888 6 CGAACGA 220 1.8189894E-11 14.295454 16 TATTGGA 1030 0.0 14.189321 2 ATCACGT 210 1.364242E-10 14.095238 23 >>END_MODULE