##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088404_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3419727 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.42477279619104 31.0 31.0 34.0 30.0 34.0 2 31.629251106886603 31.0 31.0 34.0 30.0 34.0 3 31.715012631125234 31.0 31.0 34.0 30.0 34.0 4 35.5002835021626 37.0 35.0 37.0 33.0 37.0 5 35.318256691250504 37.0 35.0 37.0 33.0 37.0 6 35.34249371367948 37.0 35.0 37.0 32.0 37.0 7 35.225754278046175 37.0 35.0 37.0 32.0 37.0 8 35.2464559305465 37.0 35.0 37.0 32.0 37.0 9 36.77015709148713 39.0 37.0 39.0 32.0 39.0 10 36.63314323043915 39.0 35.0 39.0 32.0 39.0 11 36.73298950471777 39.0 35.0 39.0 32.0 39.0 12 36.60274665199883 39.0 35.0 39.0 32.0 39.0 13 36.638435465755016 39.0 35.0 39.0 32.0 39.0 14 37.669466890193284 39.0 37.0 41.0 32.0 41.0 15 37.6643372409552 39.0 36.0 41.0 32.0 41.0 16 37.62392319620835 39.0 36.0 41.0 32.0 41.0 17 37.66221631141901 39.0 36.0 41.0 32.0 41.0 18 37.633166039277405 39.0 36.0 41.0 32.0 41.0 19 37.68257875555563 40.0 37.0 41.0 32.0 41.0 20 37.64697649841639 39.0 37.0 41.0 32.0 41.0 21 37.600833633795915 39.0 36.0 41.0 32.0 41.0 22 37.48925016529097 39.0 36.0 41.0 32.0 41.0 23 37.382352158520256 39.0 36.0 41.0 31.0 41.0 24 37.31223954426771 39.0 36.0 41.0 31.0 41.0 25 37.24741390175298 39.0 36.0 41.0 31.0 41.0 26 37.040631313552225 39.0 36.0 41.0 31.0 41.0 27 36.88264618783897 39.0 35.0 40.0 31.0 41.0 28 36.778869775277386 39.0 35.0 40.0 30.0 41.0 29 36.63422869720302 39.0 35.0 40.0 30.0 41.0 30 36.468943865986965 38.0 35.0 40.0 30.0 41.0 31 36.266206337523435 38.0 35.0 40.0 30.0 41.0 32 36.11838254925028 38.0 35.0 40.0 30.0 41.0 33 36.21323807426733 38.0 35.0 40.0 30.0 41.0 34 36.200643209238635 38.0 35.0 40.0 30.0 41.0 35 36.14674650929738 38.0 35.0 40.0 30.0 41.0 36 36.07816004026052 38.0 35.0 40.0 29.0 41.0 37 35.97002246085726 38.0 35.0 40.0 29.0 41.0 38 35.86591912161409 38.0 35.0 40.0 28.0 41.0 39 35.82697244546129 38.0 35.0 40.0 28.0 41.0 40 35.706755246836956 38.0 35.0 40.0 27.0 41.0 41 35.59326080707612 38.0 35.0 40.0 27.0 41.0 42 35.456117403523734 38.0 34.0 40.0 26.0 41.0 43 35.1351230668413 38.0 34.0 40.0 25.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 2.0 13 1.0 14 5.0 15 6.0 16 34.0 17 78.0 18 206.0 19 465.0 20 984.0 21 1939.0 22 3745.0 23 6330.0 24 10545.0 25 17073.0 26 25820.0 27 38012.0 28 53296.0 29 72671.0 30 93818.0 31 117379.0 32 143285.0 33 177015.0 34 217184.0 35 266191.0 36 338576.0 37 458801.0 38 623743.0 39 752522.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.25335151022289 22.159371201268403 13.211405471840296 23.375871816668408 2 18.093081699211663 22.85422198906521 35.75987205996268 23.292824251760447 3 19.39754255237333 25.911308124888333 31.97170417404664 22.719445148691694 4 12.994048940163939 16.197754966990054 36.686027861288345 34.122168231557666 5 12.245889803484314 39.41080676907835 34.80909441016783 13.534209017269507 6 31.211789713038495 37.466967392426355 16.03034394265975 15.290898951875398 7 25.413402882744734 34.26080502917338 22.25464196411 18.071150123971886 8 27.17330944838579 33.67040702371856 20.593164308145067 18.563119219750583 9 25.763781728775427 13.747325444399507 22.790327999866655 37.69856482695841 10 16.28223539481368 27.20299018021029 34.153661973601984 22.361112451374044 11 32.53373734219135 22.45813774023482 24.314221573827385 20.693903343746445 12 20.093358329480687 27.225389629055186 31.57407009389931 21.107181947564822 13 29.96938059675524 21.016268257670863 27.991532657431428 21.022818488142477 14 21.041270253444207 22.548759009125583 27.856989753860468 28.552980983569743 15 23.28767764210418 29.21540228211199 25.571719613875608 21.92520046190822 16 22.43363286016691 28.365012762714688 26.496384068084964 22.70497030903344 17 20.370017840605406 27.332503442526264 27.792013806950088 24.50546490991825 18 21.38261329047611 26.45363211741756 30.691748200952883 21.472006391153446 19 20.988283567664904 25.61330188053023 31.464119796697222 21.934294755107643 20 23.818684941809682 24.895846949186296 30.478339352819685 20.80712875618434 21 23.568109384170143 25.678482522142847 29.607158700095066 21.146249393591944 22 22.526535012882608 25.34199367376402 30.480824931346863 21.650646382006517 23 21.707493025028022 26.18738279400666 31.114267308472282 20.990856872493037 24 20.790548485303066 26.029007578675138 30.119538781896914 23.060905154124875 25 21.76322846823738 26.448573234062252 30.656862375271476 21.131335922428896 26 22.41570745267093 26.309000689236306 29.661665975090994 21.61362588300177 27 21.749426196886475 27.00025469869378 29.46457421893619 21.78574488548355 28 21.420043178885333 26.63002046654601 29.77471593492697 22.175220419641683 29 20.608165505609076 26.61197809064876 30.583201524566146 22.196654879176027 30 20.441748712689638 26.912733092436913 31.359082172348845 21.286436022524605 31 21.40135747678104 26.447666728952342 30.67543110897449 21.47554468529213 32 21.991550787533626 26.402341473456797 29.522239640766646 22.083868098242927 33 22.28131075960157 26.395440337781352 29.4733468490321 21.84990205358498 34 21.65529587595735 27.93579721422207 29.289121617017965 21.11978529280261 35 20.89672655156391 28.377733076353756 29.71415554516486 21.01138482691747 36 21.156074739299367 26.508227118714444 30.596565164412247 21.73913297757394 37 21.591284918357516 26.034095704130767 30.38900473634299 21.985614641168723 38 21.232601315836032 25.924467070032197 30.934340665205145 21.908590948926626 39 21.901309665947018 25.81787961436688 30.76830401958987 21.512506700096235 40 20.97266828609418 25.949030434300752 30.539279889885947 22.53902138971912 41 21.147477561805374 25.787789493137904 30.67519717217193 22.389535772884795 42 19.978641569926488 26.809800899311554 30.783509911756113 22.428047619005845 43 20.060139303517502 26.3943291379692 30.630778421786296 22.914753136726993 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 223.0 1 407.0 2 591.0 3 1528.5 4 2466.0 5 2466.0 6 3930.0 7 5394.0 8 5642.5 9 5891.0 10 8812.0 11 11733.0 12 11733.0 13 20447.5 14 29162.0 15 46674.5 16 64187.0 17 64131.5 18 64076.0 19 64076.0 20 72086.0 21 80096.0 22 69781.5 23 59467.0 24 67724.5 25 75982.0 26 75982.0 27 81899.0 28 87816.0 29 94189.0 30 100562.0 31 108555.0 32 116548.0 33 116548.0 34 127208.5 35 137869.0 36 151433.5 37 164998.0 38 171194.5 39 177391.0 40 177391.0 41 185752.5 42 194114.0 43 209508.5 44 224903.0 45 258812.5 46 292722.0 47 292722.0 48 296001.0 49 299280.0 50 276152.0 51 253024.0 52 242175.5 53 231327.0 54 231327.0 55 208093.5 56 184860.0 57 163842.0 58 142824.0 59 129028.5 60 115233.0 61 115233.0 62 103205.5 63 91178.0 64 80507.5 65 69837.0 66 59475.0 67 49113.0 68 49113.0 69 41307.0 70 33501.0 71 28413.0 72 23325.0 73 18086.5 74 12848.0 75 12848.0 76 9625.0 77 6402.0 78 5298.0 79 4194.0 80 3437.5 81 2681.0 82 2681.0 83 2060.5 84 1440.0 85 1240.0 86 1040.0 87 907.0 88 774.0 89 774.0 90 638.5 91 503.0 92 304.0 93 105.0 94 71.5 95 38.0 96 38.0 97 21.5 98 5.0 99 4.5 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3419727.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.5160434353874 #Duplication Level Percentage of deduplicated Percentage of total 1 73.81218610014537 30.643899241945338 2 13.691641346725927 11.368455537048392 3 5.0843707898029695 6.332488756532251 4 2.381386712668669 3.9546301679842757 5 1.2917047409018152 2.6813235064487797 6 0.774377915520131 1.928946430568311 7 0.4974067113108307 1.4455251042283557 8 0.3439398930129433 1.142321882999028 9 0.26517534259705017 0.9908127937127583 >10 1.5547800390968183 12.356300199325277 >50 0.16231135588526915 4.720556637282694 >100 0.12213996090512935 10.206425912330962 >500 0.01151479810898178 3.277890105033975 >1k 0.006216578119897255 4.36757754875824 >5k 4.945005322645543E-4 1.3030204129288672 >10k+ 3.532146659032531E-4 3.279825762872472 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 30888 0.9032299946750135 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 29829 0.872262610436447 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 27196 0.7952681602946667 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 13491 0.39450517541312513 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10428 0.30493662213387207 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 7142 0.20884708048332515 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 7083 0.2071217965644626 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 6899 0.2017412501056371 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 6747 0.1972964508570421 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 5886 0.17211900248177706 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 5611 0.1640774248938585 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 5061 0.14799426971802135 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 4965 0.14518702808732978 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 4310 0.12603345237792374 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 3940 0.1152138752596333 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3845 0.11243587572926142 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 3728 0.10901454999185609 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 3691 0.10793259228002704 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.9242100319703884E-5 0.0 0.0 0.0 3 0.0 2.9242100319703884E-5 0.0 0.0 0.0 4 0.0 2.9242100319703884E-5 0.0 0.0 0.0 5 0.0 2.9242100319703884E-5 0.0 0.0 0.0 6 0.0 2.9242100319703884E-5 0.0 0.0 0.0 7 0.0 5.848420063940777E-5 0.0 2.9242100319703884E-5 0.0 8 0.0 5.848420063940777E-5 0.0 2.9242100319703884E-5 0.0 9 0.0 5.848420063940777E-5 0.0 5.848420063940777E-5 0.0 10 0.0 5.848420063940777E-5 0.0 1.1696840127881554E-4 0.0 11 0.0 5.848420063940777E-5 0.0 2.3393680255763107E-4 0.0 12 0.0 8.772630095911164E-5 0.0 4.3863150479555825E-4 0.0 13 0.0 8.772630095911164E-5 0.0 4.3863150479555825E-4 0.0 14 0.0 8.772630095911164E-5 0.0 6.140841067137816E-4 0.0 15 0.0 8.772630095911164E-5 0.0 7.018104076728931E-4 0.0 16 0.0 8.772630095911164E-5 0.0 9.94231410869932E-4 0.0 17 0.0 8.772630095911164E-5 0.0 0.001725283918862529 0.0 18 0.0 8.772630095911164E-5 0.0 0.00195922072142016 0.0 19 0.0 8.772630095911164E-5 0.0 0.0023978522262157183 0.0 20 0.0 8.772630095911164E-5 0.0 0.0030119363329294997 0.0 21 0.0 8.772630095911164E-5 0.0 0.004269346646676767 0.0 22 0.0 8.772630095911164E-5 0.0 0.007076588277368339 0.0 23 0.0 8.772630095911164E-5 0.0 0.012632587338112077 0.0 24 0.0 8.772630095911164E-5 0.0 0.0203232597221942 0.0 25 0.0 8.772630095911164E-5 0.0 0.025996227184216753 0.0 26 0.0 8.772630095911164E-5 0.0 0.03509052038364466 0.0 27 0.0 8.772630095911164E-5 0.0 0.0956509101457514 0.0 28 0.0 8.772630095911164E-5 0.0 0.1618842673698807 0.0 29 0.0 8.772630095911164E-5 0.0 0.23908341221389895 0.0 30 0.0 8.772630095911164E-5 0.0 0.3676609273196369 0.0 31 0.0 8.772630095911164E-5 0.0 0.5715368507486124 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7290 0.0 29.006174 1 ACGTTTA 160 0.0 20.8125 26 CTAATCG 95 3.6106048E-6 17.526316 26 GTATCAA 12650 0.0 16.701185 2 GTATTGG 1045 0.0 16.464115 1 ATTGGAC 955 0.0 16.078535 3 TATACCG 210 0.0 15.857142 5 CTGTGCG 320 0.0 15.609375 9 TATACTG 595 0.0 15.546218 5 CTAACGG 120 1.938126E-6 15.416666 27 TACCGTC 305 0.0 15.163934 7 ATATCGA 75 0.00410661 14.8 6 TGCGTCG 140 6.0043567E-7 14.535714 10 TAGGTCG 195 6.7484507E-10 14.23077 21 TACGTTA 390 0.0 14.23077 19 ACGTTAG 80 0.0063019767 13.875 1 TTACTCG 80 0.0063019767 13.875 4 TGCGACG 215 1.9826984E-10 13.767442 22 ATCACGT 230 4.0017767E-11 13.673913 23 CGAATTA 550 0.0 13.454545 15 >>END_MODULE