##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088398_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1818297 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.35728211617794 31.0 31.0 34.0 30.0 34.0 2 31.594649278968177 31.0 31.0 34.0 30.0 34.0 3 31.694229270575708 31.0 31.0 34.0 30.0 34.0 4 35.48068054888723 37.0 35.0 37.0 33.0 37.0 5 35.267175274446366 37.0 35.0 37.0 33.0 37.0 6 35.299599020402056 37.0 35.0 37.0 32.0 37.0 7 35.181902076503455 37.0 35.0 37.0 32.0 37.0 8 35.18743527597527 37.0 35.0 37.0 32.0 37.0 9 36.73614211539699 39.0 35.0 39.0 32.0 39.0 10 36.57227669627129 39.0 35.0 39.0 32.0 39.0 11 36.687818876674164 39.0 35.0 39.0 32.0 39.0 12 36.55348053700798 39.0 35.0 39.0 32.0 39.0 13 36.607968885171125 39.0 35.0 39.0 32.0 39.0 14 37.64907383117279 39.0 36.0 41.0 32.0 41.0 15 37.6409524956594 39.0 36.0 41.0 32.0 41.0 16 37.60859309562739 39.0 36.0 41.0 32.0 41.0 17 37.60187252137577 39.0 36.0 41.0 32.0 41.0 18 37.56191810248821 39.0 36.0 41.0 32.0 41.0 19 37.61643614876998 39.0 36.0 41.0 32.0 41.0 20 37.56649986223373 39.0 36.0 41.0 32.0 41.0 21 37.51569683060578 39.0 36.0 41.0 32.0 41.0 22 37.4135391522947 39.0 36.0 41.0 32.0 41.0 23 37.323754040181555 39.0 36.0 41.0 31.0 41.0 24 37.24721758876575 39.0 36.0 41.0 31.0 41.0 25 37.182186958456185 39.0 36.0 41.0 31.0 41.0 26 36.96704278783939 39.0 36.0 40.0 31.0 41.0 27 36.81420527009614 39.0 35.0 40.0 30.0 41.0 28 36.7360123236193 39.0 35.0 40.0 30.0 41.0 29 36.59504250405737 39.0 35.0 40.0 30.0 41.0 30 36.44723111790868 38.0 35.0 40.0 30.0 41.0 31 36.265607873741196 38.0 35.0 40.0 30.0 41.0 32 36.11601350054474 38.0 35.0 40.0 30.0 41.0 33 36.227004719251035 38.0 35.0 40.0 30.0 41.0 34 36.220721917266545 38.0 35.0 40.0 30.0 41.0 35 36.194767411484484 38.0 35.0 40.0 30.0 41.0 36 36.14280175350891 38.0 35.0 40.0 30.0 41.0 37 36.04759728471201 38.0 35.0 40.0 29.0 41.0 38 35.95294663083094 38.0 35.0 40.0 29.0 41.0 39 35.94815753422021 38.0 35.0 40.0 28.0 41.0 40 35.830066265302094 38.0 35.0 40.0 28.0 41.0 41 35.74173911082733 38.0 35.0 40.0 27.0 41.0 42 35.66324148365201 38.0 35.0 40.0 27.0 41.0 43 35.328875315748746 38.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 0.0 12 0.0 13 2.0 14 4.0 15 6.0 16 16.0 17 46.0 18 108.0 19 255.0 20 542.0 21 1087.0 22 1906.0 23 3356.0 24 5579.0 25 9017.0 26 13452.0 27 19988.0 28 28191.0 29 38282.0 30 49440.0 31 62640.0 32 77253.0 33 94800.0 34 117268.0 35 144506.0 36 181223.0 37 240247.0 38 334002.0 39 395080.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.88781975661842 21.85352557915456 12.967573504218507 24.291081160008513 2 18.154294925416476 23.2729306598427 34.914868143103135 23.657906271637692 3 19.25807500094869 25.792431049493015 31.526477797631518 23.423016151926777 4 13.662729466088322 16.81380984514631 36.70164995047564 32.82181073828973 5 13.063652417619343 38.59765483856597 34.72474518739238 13.613947556422302 6 31.48391049427019 37.688727419118 16.259224978097638 14.568137108514176 7 25.7301199968982 33.368311117490705 23.000422923207815 17.90114596240328 8 26.327217170792228 34.00693066094263 21.020273365682286 18.645578802582857 9 25.98167406094824 14.073993412517316 22.14803192217773 37.796300604356716 10 15.980172656062239 27.51398698892425 34.69317718722519 21.812663167788322 11 33.206291381440984 22.981064149586125 23.615393964792332 20.197250504180563 12 19.923202865098496 27.181643042913233 31.707856307302933 21.18729778468534 13 29.189180865392178 21.391114872872805 27.145950304048238 22.273753957686782 14 21.0793946203508 22.44545308054735 27.816742809343026 28.658409489758824 15 23.518380110619994 29.52966429576686 24.74106265368089 22.210892939932254 16 22.742049291177405 28.105584511221217 26.35950012566704 22.79286607193434 17 21.049971484306468 27.88691836372166 27.849300746797688 23.21380940517418 18 21.503967723644706 26.987230358956758 29.623598345044844 21.885203572353692 19 21.568808615974177 26.546873255579257 30.391019728900176 21.49329839954639 20 23.07576815008769 26.139019093140448 29.503430957648835 21.281781799123024 21 22.940586713831678 26.54912811273406 28.975299414782075 21.53498575865219 22 22.567655339034275 26.467953255161287 29.442824797049106 21.521566608755336 23 21.8286671539358 26.82383571000777 29.58092104865157 21.76657608740486 24 21.497203152180308 26.982225676003424 29.1645424262373 22.356028745578968 25 22.18746442412873 26.988330289276174 29.360165033545126 21.46404025304997 26 22.17899496066924 27.1390757395519 28.81250972750876 21.869419572270097 27 22.006305900521202 27.252863531095308 28.880485421248565 21.86034514713493 28 21.591467180554112 27.404213943046706 29.047234857671768 21.957084018727414 29 21.149020209569724 27.226685189493242 29.699493537084425 21.924801063852605 30 21.297290816626766 27.584272536334826 29.67952980178706 21.438906845251353 31 21.823772464014404 27.294165914589314 29.250776963279375 21.631284658116908 32 21.845441091306867 27.4045989186585 28.824278981926494 21.925681008108135 33 21.93316053428015 27.264522792481095 28.939441686369165 21.86287498686958 34 21.945314764309682 27.44414141364145 29.011212139710953 21.599331682337926 35 21.54955983538443 27.695090516015807 29.32419731210028 21.43115233649948 36 21.51348212090764 27.015553564681678 29.47879251849395 21.99217179591673 37 21.602576476780197 26.48912691381001 29.69520380883871 22.213092800571083 38 21.412233535005555 26.56386717901421 29.952037538421937 22.07186174755829 39 21.701625202043452 26.220193950713224 30.074844758584547 22.003336088658784 40 21.13956080882276 26.265016111229357 30.221850445774262 22.373572634173623 41 20.992720111180958 25.936466924820312 30.43523692774063 22.635576036258104 42 20.357510351719217 26.690744141358646 30.279816773607394 22.671928733314743 43 20.372689390127135 26.11905535784308 30.402733986801938 23.10552126522785 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 198.0 1 288.0 2 378.0 3 913.5 4 1449.0 5 1449.0 6 2190.5 7 2932.0 8 2996.5 9 3061.0 10 4490.0 11 5919.0 12 5919.0 13 9942.5 14 13966.0 15 20912.5 16 27859.0 17 28069.5 18 28280.0 19 28280.0 20 32090.0 21 35900.0 22 33095.0 23 30290.0 24 35286.0 25 40282.0 26 40282.0 27 45056.0 28 49830.0 29 53385.5 30 56941.0 31 62246.5 32 67552.0 33 67552.0 34 74083.0 35 80614.0 36 88286.0 37 95958.0 38 100508.0 39 105058.0 40 105058.0 41 109529.0 42 114000.0 43 118991.0 44 123982.0 45 132177.5 46 140373.0 47 140373.0 48 141236.0 49 142099.0 50 132519.0 51 122939.0 52 116776.0 53 110613.0 54 110613.0 55 103284.0 56 95955.0 57 88856.0 58 81757.0 59 75210.0 60 68663.0 61 68663.0 62 60746.0 63 52829.0 64 46123.0 65 39417.0 66 33167.0 67 26917.0 68 26917.0 69 23217.5 70 19518.0 71 16599.0 72 13680.0 73 10929.0 74 8178.0 75 8178.0 76 6359.5 77 4541.0 78 3554.0 79 2567.0 80 2073.5 81 1580.0 82 1580.0 83 1209.5 84 839.0 85 705.5 86 572.0 87 494.5 88 417.0 89 417.0 90 364.5 91 312.0 92 181.0 93 50.0 94 40.0 95 30.0 96 30.0 97 16.0 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1818297.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 51.35829529702322 #Duplication Level Percentage of deduplicated Percentage of total 1 76.98959547481145 39.54054379193729 2 12.877825791436766 13.227663595604621 3 4.318651654026487 6.653957607974102 4 1.858508427728257 3.817992985730966 5 1.0025206518028567 2.5743875838327646 6 0.5994449622424182 1.8471882831095423 7 0.3854599102392388 1.3857594726661622 8 0.2744856091941894 1.127769037742279 9 0.2129497758062859 0.9843063722364711 >10 1.2600787792399708 12.15368793187709 >50 0.13005535354974287 4.721897648944933 >100 0.0857043672089276 7.978372843323236 >500 0.0031104099702221107 1.031789731381532 >1k 0.0012870661945746666 1.1311623583321637 >5k 1.0725551621455555E-4 0.5414265799876716 >10k+ 2.145110324291111E-4 1.2820941753192654 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 11756 0.646539041751705 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 11519 0.633504867466646 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 9829 0.5405607554761406 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4403 0.24214965981905046 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 2776 0.1526703283347 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 5.499651597071326E-5 0.0 8 0.0 0.0 0.0 5.499651597071326E-5 0.0 9 0.0 0.0 0.0 1.0999303194142652E-4 0.0 10 0.0 0.0 0.0 2.1998606388285303E-4 0.0 11 0.0 0.0 0.0 3.849756117949928E-4 0.0 12 0.0 5.499651597071326E-5 0.0 4.3997212776570606E-4 0.0 13 0.0 5.499651597071326E-5 0.0 4.949686437364193E-4 0.0 14 0.0 5.499651597071326E-5 0.0 4.949686437364193E-4 0.0 15 0.0 5.499651597071326E-5 0.0 7.149547076192723E-4 0.0 16 0.0 5.499651597071326E-5 0.0 0.001099930319414265 0.0 17 0.0 5.499651597071326E-5 0.0 0.0013749128992678315 0.0 18 0.0 5.499651597071326E-5 0.0 0.0016498954791213977 0.0 19 0.0 5.499651597071326E-5 0.0 0.0018148850270335373 0.0 20 0.0 5.499651597071326E-5 0.0 0.0019798745749456774 0.0 21 0.0 5.499651597071326E-5 0.0 0.0024748432186820963 0.0 22 0.0 5.499651597071326E-5 0.0 0.0037397630860085012 0.0 23 0.0 5.499651597071326E-5 0.0 0.006819567980368444 0.0 24 0.0 5.499651597071326E-5 0.0 0.012649198673264049 0.0 25 0.0 5.499651597071326E-5 0.0 0.01820384678630609 0.0 26 0.0 5.499651597071326E-5 0.0 0.029093156948507313 0.0 27 0.0 5.499651597071326E-5 0.0 0.08887436980867262 0.0 28 0.0 5.499651597071326E-5 0.0 0.15025048163198862 0.0 29 0.0 5.499651597071326E-5 0.0 0.22053602904256014 0.0 30 0.0 5.499651597071326E-5 0.0 0.3295941202124845 0.0 31 0.0 5.499651597071326E-5 0.0 0.5238418146210437 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 3460 0.0 23.0448 1 GGACCGT 90 4.4482465E-5 16.444445 6 TACGTTA 150 4.6748028E-9 16.033333 19 CGCATAC 85 5.366283E-4 15.235294 37 ATAGTCG 85 5.366283E-4 15.235294 20 GTATCAA 5310 0.0 14.946328 2 TAACGTG 75 0.004105627 14.8 5 GGCTAGA 175 2.240995E-9 14.8 1 ATTACGT 165 1.6467311E-8 14.575757 17 CGACGAG 115 2.2111315E-5 14.478261 24 CGAACGT 90 8.2772796E-4 14.388888 4 TAGAACA 180 3.3342076E-9 14.388888 4 GACGGTA 210 1.364242E-10 14.095239 8 ACGTTTA 185 4.9021764E-9 14.0 26 ATTCGTC 135 6.5715267E-6 13.703704 17 TACGACG 220 2.8376235E-10 13.454545 5 GTACTAG 110 2.4575918E-4 13.454545 1 GTATTAG 290 0.0 13.396551 1 TAACGCT 180 5.1632014E-8 13.361111 32 CAAGACG 360 0.0 13.361111 4 >>END_MODULE