##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088397_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2820027 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.315766834856547 31.0 31.0 34.0 30.0 34.0 2 31.546094416826506 31.0 31.0 34.0 30.0 34.0 3 31.631741823748495 31.0 31.0 34.0 30.0 34.0 4 35.42721718621843 37.0 35.0 37.0 33.0 37.0 5 35.23711616945511 37.0 35.0 37.0 33.0 37.0 6 35.27394205800157 37.0 35.0 37.0 32.0 37.0 7 35.155856663783716 37.0 35.0 37.0 32.0 37.0 8 35.17076645010846 37.0 35.0 37.0 32.0 37.0 9 36.6665833341312 39.0 35.0 39.0 32.0 39.0 10 36.53326333400354 39.0 35.0 39.0 32.0 39.0 11 36.6537770737656 39.0 35.0 39.0 32.0 39.0 12 36.5166060466797 38.0 35.0 39.0 32.0 39.0 13 36.55927159562657 39.0 35.0 39.0 32.0 39.0 14 37.558195364796156 39.0 36.0 41.0 32.0 41.0 15 37.551363869920394 39.0 36.0 41.0 32.0 41.0 16 37.51623370981909 39.0 36.0 41.0 32.0 41.0 17 37.55919251836951 39.0 36.0 41.0 32.0 41.0 18 37.53702109944337 39.0 36.0 41.0 32.0 41.0 19 37.604684281391634 39.0 36.0 41.0 32.0 41.0 20 37.56722967546055 39.0 36.0 41.0 32.0 41.0 21 37.504250136612164 39.0 36.0 41.0 32.0 41.0 22 37.39923128395579 39.0 36.0 41.0 32.0 41.0 23 37.305770831272184 39.0 36.0 41.0 31.0 41.0 24 37.238549134458644 39.0 36.0 41.0 31.0 41.0 25 37.18170712549915 39.0 36.0 41.0 31.0 41.0 26 36.94622214610002 39.0 36.0 40.0 31.0 41.0 27 36.78944846981962 39.0 35.0 40.0 30.0 41.0 28 36.69347208377792 39.0 35.0 40.0 30.0 41.0 29 36.553070945774635 38.0 35.0 40.0 30.0 41.0 30 36.37270033230178 38.0 35.0 40.0 30.0 41.0 31 36.140805744058476 38.0 35.0 40.0 30.0 41.0 32 35.99153908810093 38.0 35.0 40.0 29.0 41.0 33 36.0588625569897 38.0 35.0 40.0 30.0 41.0 34 36.01647962945036 38.0 35.0 40.0 30.0 41.0 35 35.95913727067152 38.0 35.0 40.0 29.0 41.0 36 35.88194793879633 38.0 35.0 40.0 29.0 41.0 37 35.76944688827447 38.0 35.0 40.0 28.0 41.0 38 35.64505623527718 38.0 34.0 40.0 27.0 41.0 39 35.59236347737096 38.0 34.0 40.0 27.0 41.0 40 35.433782016980686 38.0 34.0 40.0 26.0 41.0 41 35.304843180579475 38.0 34.0 40.0 25.0 41.0 42 35.16675053111194 38.0 34.0 40.0 25.0 41.0 43 34.82036129441314 38.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 2.0 13 1.0 14 1.0 15 8.0 16 19.0 17 66.0 18 166.0 19 365.0 20 878.0 21 1769.0 22 3310.0 23 5784.0 24 9452.0 25 14975.0 26 22989.0 27 33432.0 28 46775.0 29 63469.0 30 81904.0 31 101032.0 32 124450.0 33 151399.0 34 185401.0 35 225357.0 36 283954.0 37 378157.0 38 497679.0 39 587232.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.30854066290854 21.95291037993608 13.342602748129718 23.39594620902566 2 18.050784620147255 23.036233341028296 35.59987191611995 23.3131101227045 3 19.749208074958148 25.764859698151827 31.712426866834964 22.77350536005506 4 13.23685907971803 16.29693616408637 35.69940997018823 34.76679478600737 5 12.26438612112579 39.50504729210039 34.46147856031166 13.769088026462159 6 31.62395253662465 36.703903898792454 15.884245079922993 15.787898484659898 7 25.41291271324707 34.17655221031572 22.030462828901992 18.380072247535217 8 27.29736275574666 33.57896927937215 20.50827882144391 18.61538914343728 9 25.87461042039668 13.742067008578287 22.740881558935428 37.6424410120896 10 16.227007755599505 27.657820297465236 34.07151775497185 22.04365419196341 11 32.44383830367582 22.253297574810453 24.28246254379834 21.020401577715393 12 20.491470471736616 27.33463190246051 31.540442697889066 20.63345492791381 13 30.457722567904494 21.123343854509194 27.67714635356328 20.74178722402303 14 21.18171208999063 22.326523824062676 28.240793439211753 28.25097064673494 15 23.357081332909225 29.048126134962537 25.923510661422743 21.671281870705496 16 22.27624061755437 28.03065360721724 26.865168312218284 22.827937463010105 17 20.373421956598285 27.271618321384867 27.86820835403349 24.486751367983356 18 21.033947547310717 26.4653849058892 31.055092734927715 21.44557481187237 19 20.820722638471192 25.527911612193783 32.2075639701322 21.443801779202822 20 23.753460516512785 24.750578629211706 31.131191297104603 20.364769557170906 21 23.370627302504552 25.362203978898073 30.23754737100035 21.02962134759703 22 22.31365160688178 25.26982897681476 30.833428190581152 21.583091225722306 23 21.503588440819893 26.388364366724147 31.372962031923805 20.73508516053215 24 20.539377814467734 26.119643535327853 30.45839632031892 22.882582329885494 25 21.55234683923239 26.476696854320895 31.11395741955662 20.85699888689009 26 22.2168440231246 25.98638239988482 30.22456877185928 21.5722048051313 27 21.437277018978897 26.8331473422063 30.027939448806695 21.70163619000811 28 21.210612522504217 26.569249159671166 30.194817283664303 22.02532103416031 29 20.384698444376596 26.66045396019258 30.932788941382476 22.022058654048347 30 20.25157915154713 26.937437123828957 31.925864539594834 20.88511918502908 31 21.13993944029614 26.505774590101446 31.074135105798632 21.280150863803787 32 21.678444922690456 26.67009925791491 29.968507393723538 21.682948425671103 33 22.223723389882437 26.462264368390798 29.724396255780526 21.589615985946235 34 21.271888531563704 28.050582494422926 29.789892082593532 20.887636891419834 35 20.384840286990162 28.586215663892578 30.096591273771494 20.932352775345766 36 20.934090347361924 26.51854042532217 31.09668808135525 21.450681145960658 37 21.0308979311191 26.418505922106423 30.631302466252986 21.9192936805215 38 21.085188191460578 26.210564650622135 31.060872821430436 21.643374336486847 39 21.72238067224179 25.834788106638694 31.123425414011997 21.31940580710752 40 20.534165098419273 26.125955531631433 30.8461231044951 22.493756265454195 41 20.99096923540094 25.77514328763519 30.78495347739578 22.448933999568087 42 19.37715489958075 26.90825300608824 31.101156123682504 22.613435970648506 43 19.772292960315628 26.529887834407262 30.858924400369215 22.8388948049079 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 280.0 1 352.5 2 425.0 3 1362.0 4 2299.0 5 2299.0 6 3622.5 7 4946.0 8 5325.5 9 5705.0 10 8620.0 11 11535.0 12 11535.0 13 20036.5 14 28538.0 15 45584.5 16 62631.0 17 61709.5 18 60788.0 19 60788.0 20 65386.0 21 69984.0 22 59076.5 23 48169.0 24 53433.0 25 58697.0 26 58697.0 27 65462.5 28 72228.0 29 76856.5 30 81485.0 31 88614.0 32 95743.0 33 95743.0 34 104416.5 35 113090.0 36 121594.0 37 130098.0 38 135679.5 39 141261.0 40 141261.0 41 147467.5 42 153674.0 43 167398.0 44 181122.0 45 210225.5 46 239329.0 47 239329.0 48 243124.0 49 246919.0 50 228236.0 51 209553.0 52 199638.5 53 189724.0 54 189724.0 55 172026.0 56 154328.0 57 136226.0 58 118124.0 59 106808.0 60 95492.0 61 95492.0 62 84390.5 63 73289.0 64 64691.0 65 56093.0 66 47631.0 67 39169.0 68 39169.0 69 33383.0 70 27597.0 71 23666.5 72 19736.0 73 15895.0 74 12054.0 75 12054.0 76 9434.0 77 6814.0 78 5423.0 79 4032.0 80 3238.0 81 2444.0 82 2444.0 83 1846.0 84 1248.0 85 959.5 86 671.0 87 534.5 88 398.0 89 398.0 90 316.0 91 234.0 92 144.5 93 55.0 94 36.5 95 18.0 96 18.0 97 12.5 98 7.0 99 4.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2820027.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.71140420519224 #Duplication Level Percentage of deduplicated Percentage of total 1 74.54008250604153 34.81871923428085 2 13.64948798723478 12.751735011312793 3 4.934442640760639 6.914842341597191 4 2.282980896818115 4.26564973856013 5 1.2166415127539936 2.8415516737534166 6 0.726932958172582 2.0373635543565345 7 0.49073181779586433 1.6045940608187956 8 0.32726661564708437 1.2229666533084997 9 0.23941254899664363 1.0064966713179853 >10 1.381462671443035 12.022755571806222 >50 0.12787565715329874 4.1523192189770946 >100 0.07301848634526699 6.39959898186765 >500 0.004337251556870957 1.3225101241520236 >1k 0.004565527954581081 3.897189382986213 >5k 4.56552795458108E-4 1.35983101294438 >10k+ 3.0436853030540534E-4 3.3818767679601374 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 29571 1.0486069814225183 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 28915 1.0253447927980832 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 25487 0.9037856729740531 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 11174 0.3962373409899976 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9842 0.3490037506733092 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 6189 0.21946598383632498 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 6173 0.21889861338207045 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 5978 0.21198378597084352 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 5054 0.17921814223764526 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 5022 0.17808340132913622 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 4724 0.16751612661864587 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 4652 0.16496295957450052 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 4285 0.15194889978003756 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 3850 0.1365235155549929 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3645 0.12925408160985694 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 3460 0.12269386073253909 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 3380 0.11985700846126651 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 3317 0.11762298729763934 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 3.546065339090725E-5 0.0 0.0 0.0 0.0 7 3.546065339090725E-5 0.0 0.0 0.0 0.0 8 7.09213067818145E-5 0.0 0.0 0.0 0.0 9 7.09213067818145E-5 0.0 0.0 3.546065339090725E-5 0.0 10 7.09213067818145E-5 0.0 0.0 3.546065339090725E-5 0.0 11 7.09213067818145E-5 0.0 0.0 2.4822457373635076E-4 0.0 12 7.09213067818145E-5 0.0 0.0 3.191458805181652E-4 0.0 13 7.09213067818145E-5 0.0 0.0 3.546065339090725E-4 0.0 14 7.09213067818145E-5 0.0 0.0 4.25527840690887E-4 0.0 15 7.09213067818145E-5 0.0 0.0 6.028311076454232E-4 0.0 16 7.09213067818145E-5 0.0 0.0 8.865163347726812E-4 0.0 17 7.09213067818145E-5 0.0 0.0 0.0014893474424181046 0.0 18 7.09213067818145E-5 0.0 0.0 0.001843953976327177 0.0 19 7.09213067818145E-5 0.0 0.0 0.0021630998568453424 0.0 20 7.09213067818145E-5 0.0 0.0 0.0029077735780543945 0.0 21 7.09213067818145E-5 0.0 0.0 0.004113435793345241 0.0 22 7.09213067818145E-5 0.0 0.0 0.006489299570536027 0.0 23 7.09213067818145E-5 0.0 0.0 0.010921881244399433 0.0 24 7.09213067818145E-5 0.0 0.0 0.019184213484480822 0.0 25 7.09213067818145E-5 0.0 0.0 0.02471607541346235 0.0 26 7.09213067818145E-5 0.0 0.0 0.033262092880671 0.0 27 7.09213067818145E-5 0.0 0.0 0.10159477196494927 0.0 28 7.09213067818145E-5 0.0 0.0 0.17148771979842747 0.0 29 7.09213067818145E-5 0.0 0.0 0.2514869538483142 0.0 30 7.09213067818145E-5 0.0 0.0 0.3899253446864161 0.0 31 7.09213067818145E-5 0.0 0.0 0.6146395052245953 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6760 0.0 28.215235 1 CGCGGAT 50 0.0070373574 18.499998 14 TTGCGCG 125 8.592906E-9 17.76 18 GTATCAA 11665 0.0 16.430347 2 GTATTGG 735 0.0 16.108845 1 ATTGGAC 650 0.0 15.653846 3 TTGGACC 1130 0.0 14.898231 4 CGACGCA 75 0.004106373 14.8 19 CGGGATA 190 4.5656634E-10 14.605264 24 GGACCCT 1160 0.0 14.193965 6 AGAGTGT 340 0.0 14.147059 6 ATTCGAC 105 1.6569787E-4 14.095238 21 TGGACCC 1150 0.0 13.995652 5 CGTGGAT 515 0.0 13.650485 3 TCTCGCG 110 2.458345E-4 13.454545 15 GTCTATA 210 2.044544E-9 13.214285 1 CGTCTGT 675 0.0 13.155556 34 ACGAACG 170 3.7366954E-7 13.058824 15 TATACCG 300 0.0 12.95 5 ACGTTTA 215 2.904926E-9 12.906977 26 >>END_MODULE