##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088393_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3177438 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.386729811879885 31.0 31.0 34.0 30.0 34.0 2 31.608328785644282 31.0 31.0 34.0 30.0 34.0 3 31.69819898924857 31.0 31.0 34.0 30.0 34.0 4 35.48790472072154 37.0 35.0 37.0 33.0 37.0 5 35.29942645615745 37.0 35.0 37.0 33.0 37.0 6 35.3349129078207 37.0 35.0 37.0 32.0 37.0 7 35.22373874801019 37.0 35.0 37.0 32.0 37.0 8 35.237059857658906 37.0 35.0 37.0 32.0 37.0 9 36.76109022426244 39.0 37.0 39.0 32.0 39.0 10 36.630205845086515 39.0 35.0 39.0 32.0 39.0 11 36.742462008700095 39.0 35.0 39.0 32.0 39.0 12 36.6080757515961 39.0 35.0 39.0 32.0 39.0 13 36.658559506117825 39.0 35.0 39.0 32.0 39.0 14 37.68741042311447 39.0 37.0 41.0 32.0 41.0 15 37.676735785245846 39.0 36.0 41.0 32.0 41.0 16 37.639298075997075 39.0 36.0 41.0 32.0 41.0 17 37.66354906059536 39.0 36.0 41.0 32.0 41.0 18 37.645786007468914 39.0 36.0 41.0 32.0 41.0 19 37.71071473306481 40.0 37.0 41.0 32.0 41.0 20 37.67183120488897 39.0 37.0 41.0 32.0 41.0 21 37.62165115416886 39.0 37.0 41.0 32.0 41.0 22 37.52138169179068 39.0 36.0 41.0 32.0 41.0 23 37.43234391984989 39.0 36.0 41.0 32.0 41.0 24 37.35997083184628 39.0 36.0 41.0 31.0 41.0 25 37.30214373970475 39.0 36.0 41.0 31.0 41.0 26 37.09419853353551 39.0 36.0 41.0 31.0 41.0 27 36.944210398440504 39.0 36.0 40.0 31.0 41.0 28 36.853156536807326 39.0 35.0 40.0 30.0 41.0 29 36.71546761888037 39.0 35.0 40.0 30.0 41.0 30 36.552457357153784 38.0 35.0 40.0 30.0 41.0 31 36.344338426115634 38.0 35.0 40.0 30.0 41.0 32 36.21641492296624 38.0 35.0 40.0 30.0 41.0 33 36.29805963169069 38.0 35.0 40.0 30.0 41.0 34 36.268530810042556 38.0 35.0 40.0 30.0 41.0 35 36.20951187717903 38.0 35.0 40.0 30.0 41.0 36 36.14102619783612 38.0 35.0 40.0 30.0 41.0 37 36.030118604989305 38.0 35.0 40.0 29.0 41.0 38 35.9317843495294 38.0 35.0 40.0 29.0 41.0 39 35.89539622803026 38.0 35.0 40.0 28.0 41.0 40 35.76093884444008 38.0 35.0 40.0 27.0 41.0 41 35.65455879862959 38.0 35.0 40.0 27.0 41.0 42 35.53216396354547 38.0 35.0 40.0 26.0 41.0 43 35.20085804978728 38.0 34.0 40.0 25.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 0.0 13 3.0 14 4.0 15 7.0 16 33.0 17 77.0 18 164.0 19 397.0 20 817.0 21 1770.0 22 3198.0 23 5597.0 24 9371.0 25 14837.0 26 22992.0 27 34021.0 28 48278.0 29 65717.0 30 85899.0 31 107469.0 32 133132.0 33 163848.0 34 202751.0 35 248972.0 36 316418.0 37 425200.0 38 576150.0 39 710315.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.277060323442974 22.259915063645614 13.338073000952338 23.12495161195907 2 17.906564974674566 23.029623237337756 36.161429428363355 22.902382359624326 3 19.51273321462134 26.239693740680387 31.648642711517894 22.59893033318038 4 12.895326360419936 16.34474063695342 36.48206511031844 34.27786789230821 5 12.106262970355361 39.580599212321374 34.77971875454375 13.533419062779508 6 31.115382896534882 37.18892390661911 16.180614696494473 15.515078500351542 7 25.35130504513385 34.07468532824244 22.40433959687018 18.169670029753533 8 26.897771097343202 33.944926698805766 20.717005335745338 18.440296868105687 9 25.724656153794346 13.938651202635583 22.83928120706053 37.497411436509545 10 16.185901975113286 27.338125873738527 34.232170698531334 22.243801452616857 11 32.42924016141306 22.615358663174547 24.250606935524786 20.704794239887608 12 20.205649960754545 27.329534045982957 31.71347481839142 20.751341174871072 13 30.03816282174507 21.17961074299483 27.905973303019604 20.876253132240503 14 21.033801446322478 22.479274182533224 28.06226274123996 28.424661629904346 15 23.26493860777142 29.171143543949558 25.74401137016678 21.81990647811224 16 22.167702406781817 28.332763692005948 26.769869309802424 22.729664591409808 17 20.286406847277586 27.46457995403844 27.842998038041973 24.406015160642003 18 21.14842209352315 26.551706122983358 30.862097073176564 21.43777471031693 19 20.82715697363725 25.8085287580749 31.60697392049821 21.757340347789633 20 23.702523857271174 25.052353499895197 30.74001758649579 20.50510505633784 21 23.479797245453724 25.6850330360498 29.822013836304595 21.013155882191878 22 22.42032732031278 25.300257628945083 30.677671759448966 21.601743291293175 23 21.59450475508885 26.40202578303652 31.250932354935014 20.752537106939617 24 20.64509205215019 26.13045478778815 30.37019133024783 22.854261829813833 25 21.693483869708867 26.53313770402444 30.6970269758214 21.076351450445298 26 22.26051302967989 26.19730109604027 30.032686711747008 21.509499162532833 27 21.491874900470126 27.011258756268415 29.783523706835506 21.71334263642595 28 21.264742223137006 26.550258415742494 30.068722033285937 22.116277327834563 29 20.560936200800768 26.55642690746444 30.754211411835573 22.128425479899214 30 20.37578703345274 26.931918105089697 31.555832088619823 21.13646277283774 31 21.26955742330771 26.530210817646164 30.804346143024663 21.395885616021463 32 21.706041156428544 26.506512479551137 29.7184712966862 22.068975067334122 33 22.080493781467965 26.405456219759444 29.700941450313113 21.813108548459482 34 21.330140824148263 27.86395832113797 29.768448668392583 21.037452186321183 35 20.683896900584685 28.413552050425533 29.89320326627931 21.00934778271047 36 21.08513210958011 26.504183559207135 30.869178249898187 21.54150608131457 37 21.212372987293538 26.413355665791116 30.434519886776705 21.93975146013864 38 21.12094712784325 26.119596983481657 30.96019497469345 21.79926091398164 39 21.689518410744757 25.76796148343414 31.067293838620923 21.475226267200178 40 20.642416940944244 26.217065447067732 30.706500016680106 22.434017595307918 41 21.138791693181737 25.910182983900864 30.71773548374508 22.233289839172315 42 19.69838593231402 26.93487646336451 31.03465748190838 22.33208012241309 43 19.910600930686925 26.581793256076118 30.717294877193513 22.790310936043443 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 327.0 1 436.0 2 545.0 3 1510.5 4 2476.0 5 2476.0 6 3961.0 7 5446.0 8 5668.5 9 5891.0 10 8756.0 11 11621.0 12 11621.0 13 20091.5 14 28562.0 15 45448.5 16 62335.0 17 62104.5 18 61874.0 19 61874.0 20 67953.5 21 74033.0 22 64151.5 23 54270.0 24 61282.0 25 68294.0 26 68294.0 27 75638.0 28 82982.0 29 89627.5 30 96273.0 31 103846.0 32 111419.0 33 111419.0 34 120995.5 35 130572.0 36 141154.0 37 151736.0 38 159547.5 39 167359.0 40 167359.0 41 174432.0 42 181505.0 43 195744.0 44 209983.0 45 240925.5 46 271868.0 47 271868.0 48 274511.0 49 277154.0 50 256907.0 51 236660.0 52 226536.0 53 216412.0 54 216412.0 55 194780.5 56 173149.0 57 151953.0 58 130757.0 59 117602.5 60 104448.0 61 104448.0 62 92476.0 63 80504.0 64 70500.0 65 60496.0 66 51776.0 67 43056.0 68 43056.0 69 36257.5 70 29459.0 71 24868.0 72 20277.0 73 15770.5 74 11264.0 75 11264.0 76 8689.0 77 6114.0 78 4810.0 79 3506.0 80 2801.5 81 2097.0 82 2097.0 83 1579.5 84 1062.0 85 910.5 86 759.0 87 622.0 88 485.0 89 485.0 90 399.5 91 314.0 92 184.0 93 54.0 94 44.0 95 34.0 96 34.0 97 19.5 98 5.0 99 3.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3177438.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.93361774773599 #Duplication Level Percentage of deduplicated Percentage of total 1 74.90454597688229 35.15541328446709 2 13.597335794150558 12.76344321100541 3 4.9330416141783955 6.945764683605699 4 2.167354177938163 4.068870900452332 5 1.202425303279742 2.8217084777168466 6 0.7014953887676861 1.9754229856933214 7 0.4421002407327168 1.452455459331197 8 0.31372621300530484 1.1779444926908622 9 0.21084657717337804 0.8906213390826456 >10 1.3036952843422573 11.604710234696727 >50 0.1299534966653352 4.207521268988892 >100 0.08286096378987683 7.290828163145453 >500 0.006115988529220176 1.9048778850027845 >1k 0.0037636852485073732 3.2207447786567425 >5k 4.7046065606342165E-4 1.4727325103638866 >10k+ 2.6883466060766955E-4 3.046940325100123 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 29734 0.9357853717366005 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 28555 0.8986800057152964 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 25934 0.8161921648825248 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 12372 0.38937030399963746 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9940 0.31283065161302914 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 7027 0.22115301699041806 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 6658 0.2095398871669565 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 6404 0.2015460254456578 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 6135 0.19308008527625087 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 5377 0.16922438769851686 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 5148 0.16201732339073177 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 4610 0.14508544305191792 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 4379 0.13781543495105178 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 3931 0.12371602530088707 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 3915 0.12321247495623833 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3762 0.11839727478553477 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 3447 0.10848362737526272 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 3268 0.10285015789450495 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 3.1471896540546186E-5 0.0 0.0 0.0 0.0 7 3.1471896540546186E-5 0.0 0.0 0.0 0.0 8 3.1471896540546186E-5 0.0 0.0 0.0 0.0 9 3.1471896540546186E-5 0.0 0.0 6.294379308109237E-5 0.0 10 3.1471896540546186E-5 0.0 0.0 9.441568962163856E-5 0.0 11 3.1471896540546186E-5 0.0 0.0 3.461908619460081E-4 0.0 12 3.1471896540546186E-5 0.0 0.0 5.979660342703776E-4 0.0 13 3.1471896540546186E-5 0.0 0.0 7.238536204325623E-4 0.0 14 3.1471896540546186E-5 0.0 0.0 8.812131031352933E-4 0.0 15 3.1471896540546186E-5 0.0 0.0 0.0011329882754596628 0.0 16 3.1471896540546186E-5 0.0 0.0 0.001825369999351679 0.0 17 3.1471896540546186E-5 0.0 0.0 0.0027065831024869723 0.0 18 3.1471896540546186E-5 0.0 0.0 0.0030527739644329805 0.0 19 3.1471896540546186E-5 0.0 0.0 0.003650739998703358 0.0 20 3.1471896540546186E-5 0.0 0.0 0.004563424998379197 0.0 21 3.1471896540546186E-5 0.0 0.0 0.00635732310119033 0.0 22 3.1471896540546186E-5 0.0 0.0 0.010291310168758604 0.0 23 3.1471896540546186E-5 0.0 0.0 0.016365386201084017 0.0 24 3.1471896540546186E-5 0.0 0.0 0.026027258439031697 0.0 25 3.1471896540546186E-5 0.0 0.0 0.031408952747465094 0.0 26 3.1471896540546186E-5 0.0 0.0 0.0396545896410882 0.0 27 3.1471896540546186E-5 0.0 0.0 0.10215777617061293 0.0 28 3.1471896540546186E-5 0.0 0.0 0.16991676942240888 0.0 29 3.1471896540546186E-5 0.0 0.0 0.2544188116337754 0.0 30 3.1471896540546186E-5 0.0 0.0 0.39645148072126035 0.0 31 3.1471896540546186E-5 0.0 0.0 0.6284308301216263 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7150 0.0 28.125175 1 ATTGGAC 1030 0.0 18.679613 3 GTATTGG 1160 0.0 17.224138 1 TGGACCC 1550 0.0 16.351612 5 GTATCAA 12420 0.0 16.221016 2 GGACCCT 1535 0.0 16.029316 6 TTGGACC 1595 0.0 15.890283 4 CGAACGA 250 0.0 14.800001 16 ACGAACG 265 0.0 14.660377 15 CGTCCCG 90 8.2796824E-4 14.388888 32 GTCGGGT 180 3.3378456E-9 14.388888 24 TATTGGA 1500 0.0 14.060001 2 CGTCTAT 145 8.9234527E-7 14.034483 1 TAGGTCG 185 4.9076334E-9 14.0 21 GATAACG 265 0.0 13.962263 11 AACGGTA 120 3.303963E-5 13.875001 18 GACCCTC 1795 0.0 13.810584 7 ATAACGA 275 0.0 13.454545 12 GTCTATA 265 1.8189894E-12 13.26415 1 ACCCTCG 1845 0.0 13.135502 8 >>END_MODULE