##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088390_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3687092 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.36370044468649 31.0 31.0 34.0 30.0 34.0 2 31.586527539860683 31.0 31.0 34.0 30.0 34.0 3 31.674900707657958 31.0 31.0 34.0 30.0 34.0 4 35.463868002208784 37.0 35.0 37.0 33.0 37.0 5 35.27261402753172 37.0 35.0 37.0 33.0 37.0 6 35.31089405960036 37.0 35.0 37.0 32.0 37.0 7 35.1895116802076 37.0 35.0 37.0 32.0 37.0 8 35.20954888025577 37.0 35.0 37.0 32.0 37.0 9 36.725041577481655 39.0 35.0 39.0 32.0 39.0 10 36.590206048560766 39.0 35.0 39.0 32.0 39.0 11 36.70939455809619 39.0 35.0 39.0 32.0 39.0 12 36.57111675000244 39.0 35.0 39.0 32.0 39.0 13 36.62490819323196 39.0 35.0 39.0 32.0 39.0 14 37.63846087919694 39.0 36.0 41.0 32.0 41.0 15 37.627442168516545 39.0 36.0 41.0 32.0 41.0 16 37.59247748632256 39.0 36.0 41.0 32.0 41.0 17 37.61907215767874 39.0 36.0 41.0 32.0 41.0 18 37.59869430977041 39.0 36.0 41.0 32.0 41.0 19 37.66479464032902 39.0 37.0 41.0 32.0 41.0 20 37.62338612651922 39.0 37.0 41.0 32.0 41.0 21 37.5712114045432 39.0 36.0 41.0 32.0 41.0 22 37.46873796477007 39.0 36.0 41.0 32.0 41.0 23 37.37357923263103 39.0 36.0 41.0 32.0 41.0 24 37.29812166335964 39.0 36.0 41.0 31.0 41.0 25 37.23855249611347 39.0 36.0 41.0 31.0 41.0 26 37.00597462715875 39.0 36.0 41.0 31.0 41.0 27 36.85157327237834 39.0 35.0 40.0 31.0 41.0 28 36.751299669224416 39.0 35.0 40.0 30.0 41.0 29 36.6070868315735 39.0 35.0 40.0 30.0 41.0 30 36.42641192571273 38.0 35.0 40.0 30.0 41.0 31 36.205498262587426 38.0 35.0 40.0 30.0 41.0 32 36.065807145577054 38.0 35.0 40.0 30.0 41.0 33 36.130356118046414 38.0 35.0 40.0 30.0 41.0 34 36.09539414801692 38.0 35.0 40.0 30.0 41.0 35 36.03897027793177 38.0 35.0 40.0 29.0 41.0 36 35.96184472749798 38.0 35.0 40.0 29.0 41.0 37 35.845137306039554 38.0 35.0 40.0 28.0 41.0 38 35.728300785551326 38.0 35.0 40.0 28.0 41.0 39 35.68136921997064 38.0 35.0 40.0 27.0 41.0 40 35.52494323439719 38.0 34.0 40.0 26.0 41.0 41 35.39696975285672 38.0 34.0 40.0 26.0 41.0 42 35.264019449474006 38.0 34.0 40.0 25.0 41.0 43 34.918102938575984 38.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 0.0 13 1.0 14 4.0 15 16.0 16 29.0 17 82.0 18 211.0 19 493.0 20 1101.0 21 2220.0 22 3965.0 23 7143.0 24 11604.0 25 18985.0 26 28423.0 27 41626.0 28 59361.0 29 80142.0 30 104095.0 31 129050.0 32 158571.0 33 194253.0 34 239192.0 35 293297.0 36 371086.0 37 497317.0 38 660704.0 39 784119.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.4727107433175 21.898911120199877 13.288060075528357 23.34031806095427 2 18.11894034648444 22.95801135420543 35.44419287612026 23.478855423189874 3 19.682693027459038 25.85810172352629 31.695466237349105 22.763739011665564 4 13.217164095715539 16.034940272713563 35.872986082256695 34.874909549314204 5 12.38867920843852 39.47794088132328 34.28034884944558 13.853031060792626 6 31.66351693963698 36.642101688810584 15.869796576814466 15.824584794737968 7 25.411625204904027 34.16261378886125 22.065031195315985 18.36072981091874 8 27.46969698613433 33.286774509559294 20.46192500756694 18.781603496739436 9 25.904778074428304 13.638634457724407 22.708492220969806 37.74809524687748 10 16.298101593342395 27.388142199869165 33.84157487797972 22.47218132880872 11 32.67691720195754 22.228059402911562 24.186486260717118 20.908537134413788 12 20.3887508095811 27.113427058505728 31.54974163921052 20.94808049270265 13 30.27993334584545 21.0281707101423 27.778476913513412 20.91341903049883 14 21.191958323795554 22.217943029357553 28.02886393938638 28.561234707460514 15 23.414739854606285 29.009148673263375 25.687913401672645 21.888198070457694 16 22.582105355656978 27.920079021624627 26.600014320228517 22.897801302489874 17 20.468678297151254 27.16924340374474 27.70923535404053 24.65284294506348 18 21.29496633119 26.315345535180573 30.869910487723118 21.519777645906313 19 20.919873981989056 25.345367026372003 31.815099813077623 21.919659178561314 20 23.864660822133 24.610370449123593 30.713038893523674 20.811929835219733 21 23.6434024429008 25.365816746639357 29.83044632463741 21.160334485822432 22 22.482514675522065 25.132001045810625 30.614072011221854 21.771412267445456 23 21.637133003461805 26.179683067306158 31.188291477402785 20.994892451829248 24 20.681474723169373 25.8661297304217 30.2760007073325 23.17639483907643 25 21.723868023906103 26.28090104613609 30.919705827790573 21.075525102167237 26 22.592086120986405 25.863932877183426 29.88119092227696 21.66279007955321 27 21.661949308560786 26.81647216831042 29.72960804883632 21.791970474292476 28 21.3222235843315 26.51832392573877 29.911214583199985 22.24823790672975 29 20.631570896522245 26.340731394822804 30.690799144691805 22.336898563963146 30 20.365670289756803 26.780047799187003 31.62305144542095 21.23123046563525 31 21.345222739221047 26.33972789396088 30.858655005082596 21.45639436173548 32 22.009621674750726 26.399449756067927 29.59961400474954 21.991314564431807 33 22.365213561256407 26.360394587387564 29.401300537117052 21.87309131423897 34 21.541827543223764 27.84188731932916 29.481119538107535 21.135165599339533 35 20.710549126520302 28.361375306067764 29.780461133055535 21.1476144343564 36 21.157405348171405 26.360964141930822 30.81913876843865 21.66249174145912 37 21.264047655984715 26.213612245097217 30.474015836870898 22.048324262047164 38 21.22390762150768 26.01665485971058 30.876012857829423 21.883424660952315 39 21.927768550391473 25.53090619924862 30.90568393736853 21.63564131299138 40 20.774990154842897 25.93268624704781 30.641193656138764 22.65112994197053 41 21.10644377737252 25.615742704548733 30.70327510135359 22.574538416725158 42 19.64732640248738 26.65103013431723 31.00074530280232 22.700898160393066 43 19.846345032887708 26.311819721341372 30.807910407443046 23.033924838327874 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 358.0 1 510.0 2 662.0 3 1874.0 4 3086.0 5 3086.0 6 4988.5 7 6891.0 8 7239.5 9 7588.0 10 11141.0 11 14694.0 12 14694.0 13 25432.5 14 36171.0 15 57206.0 16 78241.0 17 76963.5 18 75686.0 19 75686.0 20 81059.5 21 86433.0 22 72564.5 23 58696.0 24 66178.5 25 73661.0 26 73661.0 27 80869.5 28 88078.0 29 94248.5 30 100419.0 31 108444.5 32 116470.0 33 116470.0 34 127225.5 35 137981.0 36 151787.5 37 165594.0 38 174530.5 39 183467.0 40 183467.0 41 194466.0 42 205465.0 43 224286.0 44 243107.0 45 284447.5 46 325788.0 47 325788.0 48 329542.5 49 333297.0 50 308038.5 51 282780.0 52 268051.5 53 253323.0 54 253323.0 55 227913.5 56 202504.0 57 178591.0 58 154678.0 59 140411.5 60 126145.0 61 126145.0 62 112723.5 63 99302.0 64 88118.0 65 76934.0 66 65537.5 67 54141.0 68 54141.0 69 45570.5 70 37000.0 71 31262.5 72 25525.0 73 20125.0 74 14725.0 75 14725.0 76 11151.5 77 7578.0 78 5988.5 79 4399.0 80 3615.5 81 2832.0 82 2832.0 83 2116.0 84 1400.0 85 1140.0 86 880.0 87 733.5 88 587.0 89 587.0 90 492.5 91 398.0 92 240.5 93 83.0 94 57.0 95 31.0 96 31.0 97 18.5 98 6.0 99 7.0 100 8.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3687092.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.71431721572075 #Duplication Level Percentage of deduplicated Percentage of total 1 70.9691376568304 28.184908454295147 2 14.19588584896645 11.275598275280293 3 5.733551019660693 6.831121919019717 4 2.825320546262115 4.488227056413882 5 1.6120454977460101 3.201064313182974 6 1.020879330784428 2.4326115349047286 7 0.6585382001028667 1.830737648428852 8 0.4538030729011547 1.4417983352532242 9 0.3406571331279368 1.2176068902156802 >10 1.887817886979259 13.766712459130545 >50 0.16488749504175074 4.548532423141015 >100 0.12259697059305347 9.419395855191386 >500 0.009146016948501262 2.48905928492203 >1k 0.00484602390406928 3.767946483190962 >5k 5.460308624303414E-4 1.4975286601947262 >10k+ 3.412692890189634E-4 3.6071504072347826 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 36491 0.9896959446631654 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 36454 0.9886924438012396 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 32315 0.8764359554901261 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 14934 0.40503464518921684 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12879 0.3492996648849554 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 8197 0.2223161233839568 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 7858 0.21312188575712243 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 7810 0.2118200468011105 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 7031 0.19069228541083325 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 6519 0.17680600321337248 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 6276 0.170215443498562 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 5950 0.16137378725564755 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 5605 0.15201681975931167 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 4965 0.1346589670124857 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 4739 0.1285294752612628 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4577 0.12413576878472249 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 4312 0.11694853288173987 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 4297 0.11654170820798614 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 2.7121644916915552E-5 0.0 10 0.0 0.0 0.0 5.4243289833831105E-5 0.0 11 0.0 0.0 0.0 1.0848657966766221E-4 0.0 12 0.0 0.0 0.0 4.3394631867064884E-4 0.0 13 0.0 0.0 0.0 4.8818960850447997E-4 0.0 14 0.0 0.0 0.0 6.237978330890577E-4 0.0 15 0.0 0.0 0.0 8.407709924243822E-4 0.0 16 0.0 0.0 0.0 0.0014645688255134398 0.0 17 0.0 0.0 0.0 0.002115488303519413 0.0 18 0.0 0.0 0.0 0.002305339817937822 0.0 19 0.0 0.0 0.0 0.002793529426442302 0.0 20 0.0 0.0 0.0 0.0034986921942821063 0.0 21 0.0 0.0 0.0 0.004746287860460221 0.0 22 0.0 0.0 0.0 0.007404209062317946 0.0 23 0.0 0.0 0.0 0.012611564886365731 0.0 24 0.0 0.0 0.0 0.020748058361440398 0.0 25 0.0 0.0 0.0 0.025955414185488183 0.0 26 0.0 0.0 0.0 0.03566496306574395 0.0 27 0.0 0.0 0.0 0.10355044029278358 0.0 28 0.0 0.0 0.0 0.1712460660054048 0.0 29 0.0 0.0 0.0 0.25030566093821366 0.0 30 0.0 0.0 0.0 0.3926942967520203 0.0 31 0.0 0.0 0.0 0.6100200374712647 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8875 0.0 26.077183 1 CGCACTA 110 7.4578566E-11 21.863636 29 ATTGGAC 950 0.0 18.110527 3 GTATTGG 1000 0.0 17.945 1 GGACCCT 1515 0.0 16.240925 6 GTATCAA 15275 0.0 15.211784 2 TTGGACC 1685 0.0 15.041544 4 TGGACCC 1690 0.0 14.997042 5 CGAATTA 260 0.0 14.942307 15 CGTCTGT 905 0.0 14.309392 34 TATTGGA 1375 0.0 14.261818 2 TATACCG 275 0.0 14.127272 5 GACCCTC 1690 0.0 14.011835 7 ACGTTTA 230 4.0017767E-11 13.673913 26 TTATGCG 190 7.1413524E-9 13.631579 4 CGTACGA 205 1.4260877E-9 13.536585 12 ACCGTGG 315 0.0 13.507937 8 GACCGTG 350 0.0 13.214286 7 AAGACCG 225 4.0745363E-10 13.155556 5 CGATGCG 310 0.0 13.129032 33 >>END_MODULE