##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088385_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1662862 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.381500088401804 31.0 31.0 34.0 30.0 34.0 2 31.6200490479667 31.0 31.0 34.0 30.0 34.0 3 31.703595968877753 31.0 31.0 34.0 30.0 34.0 4 35.497852497681706 37.0 35.0 37.0 33.0 37.0 5 35.32263471051717 37.0 35.0 37.0 33.0 37.0 6 35.35983202454563 37.0 35.0 37.0 32.0 37.0 7 35.22737364856494 37.0 35.0 37.0 32.0 37.0 8 35.2532368891706 37.0 35.0 37.0 32.0 37.0 9 36.75934142460409 39.0 37.0 39.0 32.0 39.0 10 36.64542938620282 39.0 35.0 39.0 32.0 39.0 11 36.753833451001945 39.0 35.0 39.0 32.0 39.0 12 36.61629527886259 39.0 35.0 39.0 32.0 39.0 13 36.65265668467979 39.0 35.0 39.0 32.0 39.0 14 37.65603279165679 39.0 36.0 41.0 32.0 41.0 15 37.648508415009786 39.0 36.0 41.0 32.0 41.0 16 37.607704668216606 39.0 36.0 41.0 32.0 41.0 17 37.6723173660833 39.0 36.0 41.0 32.0 41.0 18 37.64285791605076 39.0 36.0 41.0 32.0 41.0 19 37.713708654115614 40.0 37.0 41.0 32.0 41.0 20 37.681115450350056 39.0 37.0 41.0 32.0 41.0 21 37.62230720288274 39.0 37.0 41.0 32.0 41.0 22 37.52151711927989 39.0 36.0 41.0 32.0 41.0 23 37.404492375194096 39.0 36.0 41.0 32.0 41.0 24 37.33889342591267 39.0 36.0 41.0 31.0 41.0 25 37.28432124854618 39.0 36.0 41.0 31.0 41.0 26 37.05867113446576 39.0 36.0 41.0 31.0 41.0 27 36.91399586977151 39.0 35.0 40.0 31.0 41.0 28 36.80948509256932 39.0 35.0 40.0 30.0 41.0 29 36.66436060238312 39.0 35.0 40.0 30.0 41.0 30 36.48777589481268 38.0 35.0 40.0 30.0 41.0 31 36.24085281881479 38.0 35.0 40.0 30.0 41.0 32 36.096814407930424 38.0 35.0 40.0 30.0 41.0 33 36.15600873674424 38.0 35.0 40.0 30.0 41.0 34 36.107763602752364 38.0 35.0 40.0 30.0 41.0 35 36.04189163021345 38.0 35.0 40.0 30.0 41.0 36 35.96151394403144 38.0 35.0 40.0 29.0 41.0 37 35.84619950422825 38.0 35.0 40.0 29.0 41.0 38 35.72681316910243 38.0 35.0 40.0 28.0 41.0 39 35.672127332274115 38.0 35.0 40.0 27.0 41.0 40 35.50996474752565 38.0 34.0 40.0 26.0 41.0 41 35.36390873085079 38.0 34.0 40.0 26.0 41.0 42 35.21505392510022 38.0 34.0 40.0 25.0 41.0 43 34.87917457973061 38.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 1.0 14 0.0 15 4.0 16 13.0 17 36.0 18 95.0 19 226.0 20 470.0 21 977.0 22 1710.0 23 3068.0 24 5210.0 25 8134.0 26 12460.0 27 18498.0 28 26099.0 29 35480.0 30 45782.0 31 57077.0 32 70297.0 33 87517.0 34 107866.0 35 132308.0 36 168907.0 37 228558.0 38 299526.0 39 352542.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.31936384378258 22.152048696764975 13.611412131614047 22.91717532783839 2 17.93522252598231 22.870087836513193 36.154894392920156 23.039795244584337 3 19.605174692788697 25.988266013655974 32.11655567329099 22.29000362026434 4 12.984841796853857 15.950872652090192 35.966905251307686 35.09738029974827 5 11.927087154556421 39.82423075396515 34.60040580637479 13.648276285103634 6 31.379994250875896 36.624326011418866 15.852067098773079 16.143612638932154 7 25.078689632693514 34.663489814548655 21.810468938492793 18.447351614265045 8 27.536740872062744 33.466878189531066 20.393454177195704 18.60292676121049 9 25.764254640493316 13.635767730575358 23.136315581208784 37.46366204772254 10 16.500707815801913 27.349292965982748 33.69419711316994 22.455802105045397 11 32.13381507304875 22.141765221647976 24.553330342505873 21.171089362797392 12 20.424304602546695 27.321329130138277 31.3508878066851 20.903478460629927 13 30.65515959833107 20.95447487524521 28.109007241731426 20.281358284692296 14 21.084251128476087 22.5820302586745 28.029144932050887 28.304573680798526 15 23.336392316379833 28.96866967914355 26.09440831530217 21.600529689174447 16 22.220304511138025 28.235295532641913 26.77257643749151 22.771823518728553 17 20.10527632479424 27.16713714066471 27.70422320072261 25.023363333818438 18 21.05712921457102 26.309579508101095 31.35329329794054 21.279997979387346 19 20.5252750979937 25.287005175414436 32.445747151597665 21.741972574994197 20 24.156845246328317 24.284636969273457 31.20812190067486 20.350395883723362 21 23.76980170332836 25.21255522105863 30.124267678255922 20.893375397357087 22 22.483405117201546 24.802418962006467 30.98471190032606 21.72946402046592 23 21.384035476185034 26.223041960186716 31.90270750068256 20.490215062945694 24 20.27504387014677 25.80322359883141 30.700503108496076 23.22122942252574 25 21.410616154557623 26.41073041539226 31.40657492924849 20.77207850080163 26 22.419900148057987 25.912613313672452 30.262703700006377 21.404782838263188 27 21.453494036185806 26.773057535742595 30.03352052064453 21.739927907427077 28 21.084672089445785 26.51825587451033 30.22938764611856 22.16768438992532 29 20.18321424147043 26.43087640465655 31.15814781984314 22.227761534029884 30 19.75148869840071 26.85694904327599 32.41044656742412 20.981115690899184 31 20.959586544163013 26.309038272568618 31.524504138046332 21.206871045222034 32 21.776972472760818 26.295146560568465 30.00230927160522 21.925571695065496 33 22.379127071278315 26.324132730196492 29.685085112294345 21.611655086230847 34 21.269594229707575 28.30144654216646 29.64539450657962 20.783564721546348 35 20.198729660068004 28.985508117931612 30.031956951328493 20.78380527067189 36 20.74772290184032 26.43099667921932 31.413310304763716 21.407970114176642 37 21.006914584613757 26.37302433996327 30.875743146454727 21.74431792896825 38 20.96529958589468 26.025130167145562 31.41084467622689 21.598725570732867 39 21.915769318199587 25.56357653250841 31.289247093264507 21.2314070560275 40 20.42274103323066 26.05513867055715 30.962100282524947 22.560020013687247 41 21.069577631817914 25.76539724883965 30.835330893363373 22.329694225979065 42 19.27556225351232 27.038082534810464 31.26338806226855 22.42296714940867 43 19.603430711628505 26.685798340451583 30.943998960827777 22.76677198709213 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 126.0 1 175.5 2 225.0 3 685.0 4 1145.0 5 1145.0 6 1931.0 7 2717.0 8 2947.0 9 3177.0 10 4818.0 11 6459.0 12 6459.0 13 11381.5 14 16304.0 15 26968.5 16 37633.0 17 37044.0 18 36455.0 19 36455.0 20 39330.0 21 42205.0 22 35307.5 23 28410.0 24 31695.5 25 34981.0 26 34981.0 27 37799.5 28 40618.0 29 43245.5 30 45873.0 31 49473.5 32 53074.0 33 53074.0 34 57941.0 35 62808.0 36 68570.5 37 74333.0 38 77028.5 39 79724.0 40 79724.0 41 84667.5 42 89611.0 43 99390.5 44 109170.0 45 130866.0 46 152562.0 47 152562.0 48 156006.5 49 159451.0 50 145414.0 51 131377.0 52 124277.0 53 117177.0 54 117177.0 55 103732.5 56 90288.0 57 77890.0 58 65492.0 59 57949.0 60 50406.0 61 50406.0 62 44907.5 63 39409.0 64 35004.5 65 30600.0 66 26161.0 67 21722.0 68 21722.0 69 18427.5 70 15133.0 71 12733.5 72 10334.0 73 8129.5 74 5925.0 75 5925.0 76 4534.0 77 3143.0 78 2558.0 79 1973.0 80 1635.0 81 1297.0 82 1297.0 83 963.0 84 629.0 85 505.5 86 382.0 87 326.5 88 271.0 89 271.0 90 230.5 91 190.0 92 112.5 93 35.0 94 24.0 95 13.0 96 13.0 97 9.0 98 5.0 99 2.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1662862.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 47.831793670834465 #Duplication Level Percentage of deduplicated Percentage of total 1 78.21483903693334 37.41156042812124 2 12.176658257749366 11.648628107698608 3 3.984895368329656 5.718140791734241 4 1.7528805779195435 3.3537368853064278 5 0.8988614238918005 2.149707708313254 6 0.566319637137725 1.6252850421188108 7 0.36602989244840856 1.2255506405065006 8 0.2802785095946554 1.0724979073040444 9 0.2147371623915851 0.9244137280477297 >10 1.3134051402539413 11.979225517467734 >50 0.13101725629395392 4.305771145269133 >100 0.08835592660737376 7.841015700243878 >500 0.006554130573476082 2.2785117441423206 >1k 0.0045374750124065185 4.448565991652583 >5k 2.5208194513369546E-4 0.8544569759678551 >10k+ 3.7812291770054316E-4 3.1629316861058028 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 18506 1.1129005293283507 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 17914 1.0772992587478696 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 16044 0.9648425425561472 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 8373 0.5035294570445413 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5800 0.34879623203849747 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 4715 0.2835472817347441 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 4478 0.26929474604627446 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 4357 0.26201813499857474 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 4279 0.2573274270504708 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 3655 0.21980176346563934 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 3539 0.2128258388248694 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 3223 0.1938224579069099 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 3085 0.1855235130756491 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 2827 0.17000809447807455 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 2539 0.15268855743892157 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 2419 0.14547208367260783 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 2402 0.1444497498890467 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2272 0.1366319033088735 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 2006 0.12063538646021137 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 1985 0.11937250355110647 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 1683 0.10121104457255022 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 1.2027456277189569E-4 0.0 11 0.0 0.0 0.0 4.8109825108758275E-4 0.0 12 0.0 0.0 0.0 4.8109825108758275E-4 0.0 13 0.0 0.0 0.0 5.412355324735306E-4 0.0 14 0.0 0.0 0.0 6.615100952454263E-4 0.0 15 0.0 0.0 0.0 7.817846580173219E-4 0.0 16 0.0 0.0 0.0 0.0013831574718768003 0.0 17 0.0 0.0 0.0 0.0028264522251395486 0.0 18 0.0 0.0 0.0 0.0033676877576130793 0.0 19 0.0 0.0 0.0 0.0036683741645428185 0.0 20 0.0 0.0 0.0 0.004510296103946088 0.0 21 0.0 0.0 0.0 0.006915787359384002 0.0 22 0.0 0.0 0.0 0.010704436086698715 0.0 23 0.0 0.0 0.0 0.016537752381135657 0.0 24 0.0 0.0 0.0 0.02621985468427326 0.0 25 0.0 0.0 0.0 0.03241399466702589 0.0 26 0.0 0.0 0.0 0.04317856803511055 0.0 27 0.0 0.0 0.0 0.11468179560300254 0.0 28 0.0 0.0 0.0 0.19021422102375302 0.0 29 0.0 0.0 0.0 0.2784356128169385 0.0 30 0.0 0.0 0.0 0.4367770747061392 0.0 31 6.0137281385947844E-5 0.0 0.0 0.6683056080420383 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 4595 0.0 26.934711 1 GTATTGG 645 0.0 20.07752 1 ACGTTTA 85 1.2459932E-6 19.588236 26 ATTGGAC 600 0.0 19.425 3 CTAACGG 50 0.007036171 18.5 27 CGCCGGA 120 5.178663E-9 18.5 14 CGTGGTT 105 4.8004404E-7 17.61905 36 TATACCG 105 4.8004404E-7 17.61905 5 ACGGACC 165 5.4569682E-11 16.818182 8 TACGTTA 110 7.8127596E-7 16.818182 19 ATCACGT 100 5.8809655E-6 16.650002 23 TGGACCC 975 0.0 16.31795 5 GCGTCGG 125 1.6589001E-7 16.279999 9 TTGGACC 1005 0.0 16.199005 4 GGACCCT 940 0.0 16.138298 6 ACGTTAA 115 1.2429336E-6 16.086956 20 GACCGTC 115 1.2429336E-6 16.086956 22 GTATCAA 7950 0.0 15.5679245 2 CGGACCA 170 1.4879333E-9 15.235294 9 GCCGTCA 135 3.9749466E-7 15.074073 13 >>END_MODULE