##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088384_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1876576 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.420316576573505 31.0 31.0 34.0 30.0 34.0 2 31.662462911174394 31.0 31.0 34.0 30.0 34.0 3 31.758630079463874 31.0 31.0 34.0 30.0 34.0 4 35.54028933547056 37.0 35.0 37.0 33.0 37.0 5 35.35132283477994 37.0 35.0 37.0 33.0 37.0 6 35.38945611581945 37.0 35.0 37.0 33.0 37.0 7 35.269897408897904 37.0 35.0 37.0 32.0 37.0 8 35.28743466824685 37.0 35.0 37.0 32.0 37.0 9 36.824046561396926 39.0 37.0 39.0 32.0 39.0 10 36.702177796156406 39.0 35.0 39.0 32.0 39.0 11 36.80040350084409 39.0 37.0 39.0 32.0 39.0 12 36.67119423886909 39.0 35.0 39.0 32.0 39.0 13 36.715395486247296 39.0 35.0 39.0 32.0 39.0 14 37.76227821308596 40.0 37.0 41.0 32.0 41.0 15 37.749809759903144 40.0 37.0 41.0 32.0 41.0 16 37.70950070767184 39.0 37.0 41.0 32.0 41.0 17 37.73352371553297 39.0 37.0 41.0 32.0 41.0 18 37.69839590829255 39.0 37.0 41.0 32.0 41.0 19 37.75668451477585 40.0 37.0 41.0 32.0 41.0 20 37.72425150913153 40.0 37.0 41.0 32.0 41.0 21 37.67252805108879 39.0 37.0 41.0 32.0 41.0 22 37.578190811350034 39.0 36.0 41.0 32.0 41.0 23 37.479417833330494 39.0 36.0 41.0 32.0 41.0 24 37.40347153539212 39.0 36.0 41.0 32.0 41.0 25 37.34658921354637 39.0 36.0 41.0 31.0 41.0 26 37.138998367239054 39.0 36.0 41.0 31.0 41.0 27 36.993106061251986 39.0 36.0 40.0 31.0 41.0 28 36.89255697610968 39.0 35.0 40.0 31.0 41.0 29 36.75872066998619 39.0 35.0 40.0 30.0 41.0 30 36.60050432276657 38.0 35.0 40.0 30.0 41.0 31 36.39968804887199 38.0 35.0 40.0 30.0 41.0 32 36.28172320225773 38.0 35.0 40.0 30.0 41.0 33 36.36071014443326 38.0 35.0 40.0 30.0 41.0 34 36.332977721126134 38.0 35.0 40.0 30.0 41.0 35 36.2706093438262 38.0 35.0 40.0 30.0 41.0 36 36.19747081919411 38.0 35.0 40.0 30.0 41.0 37 36.100542690517194 38.0 35.0 40.0 29.0 41.0 38 35.99166247463465 38.0 35.0 40.0 29.0 41.0 39 35.97433623791416 38.0 35.0 40.0 29.0 41.0 40 35.83290578159371 38.0 35.0 40.0 28.0 41.0 41 35.714046220350255 38.0 35.0 40.0 27.0 41.0 42 35.59753774960353 38.0 35.0 40.0 27.0 41.0 43 35.285128873011274 38.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 4.0 15 8.0 16 20.0 17 38.0 18 101.0 19 186.0 20 469.0 21 931.0 22 1764.0 23 3224.0 24 5228.0 25 8317.0 26 12702.0 27 19449.0 28 27422.0 29 37539.0 30 48950.0 31 61955.0 32 76536.0 33 95078.0 34 118791.0 35 147143.0 36 187325.0 37 253163.0 38 346276.0 39 423957.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.4703694388077 21.642342223283258 13.187741929983119 23.699546407925926 2 18.08410637245707 22.603933973364253 35.94567979127944 23.36627986289924 3 19.50595126443054 25.82922301041898 31.521878144024008 23.142947581126478 4 13.164827856692188 15.941587231212592 35.88210656003274 35.01147835206248 5 12.503730197977594 39.041264515798986 34.68913595825589 13.765869327967534 6 31.86729447674914 36.43241733881282 16.03217775352557 15.66811043091247 7 25.73623450369183 33.79633971659022 22.106218986068242 18.36120679364971 8 27.241955561618607 33.378504254557235 20.654319356103883 18.725220827720275 9 25.813023293487714 13.834131950957488 22.476041471275344 37.876803284279454 10 16.481187012942723 26.888226216257692 33.945227904438724 22.68535886636086 11 32.8985876404686 22.122631857169655 24.29227486656549 20.68650563579626 12 20.498450369183022 26.826518083999794 31.162553501696706 21.512478045120474 13 30.217161468546973 20.774698173695068 27.72661485599304 21.281525501764918 14 21.253389151305356 21.9601550909742 27.612843817676445 29.173611940043997 15 23.496090752519482 28.869121207987313 25.37904140306601 22.255746636427194 16 22.84772905547124 27.88157793769077 26.1936100642873 23.07708294255069 17 20.784343399894276 27.080544566273897 27.144863837116105 24.99024819671572 18 21.850540558975496 25.991220179731595 30.280628122708592 21.877611138584317 19 21.278701209010453 25.159492607813377 30.97337917569019 22.588427007485976 20 24.29222157802295 24.50660138464949 29.91480227819177 21.286374759135786 21 24.141681445355797 25.241663540405508 29.06921968521392 21.54743532902478 22 22.923718517129068 24.955930375321863 29.862739372133078 22.257611735415992 23 22.0333735484201 26.049411268182048 30.61330849376737 21.303906689630477 24 21.083185546442028 25.694829306140544 29.486309107651383 23.735676039766044 25 22.12486997595621 26.15710741264942 30.088149907064782 21.629872704329586 26 22.87389372985693 25.75520522483502 29.319409392425356 22.051491652882696 27 22.090605443104888 26.658392732295415 28.95955186467268 22.291449959927014 28 21.72573879235373 26.295231314905443 29.25706179765701 22.72196809508381 29 20.970160547720955 26.356193407567822 29.87728714424569 22.79635890046553 30 20.672330883481404 26.529114728100538 30.9548347628873 21.843719625530753 31 21.69312620432106 26.030227392868717 30.347505243592586 21.92914115921764 32 22.382200347867606 25.970384359599613 28.885107770748427 22.762307521784354 33 22.728256143103184 26.004169295568097 28.834643520965848 22.432931040362874 34 21.95344073461453 27.83761489009771 28.71650282216121 21.492441553126547 35 21.203830806745902 28.185002898896716 29.11094461402043 21.500221680336953 36 21.483915386320618 26.21178145729243 30.341057329945603 21.963245826441348 37 21.824056153334585 25.952692563477314 29.8525612605085 22.370690022679604 38 21.4755490851423 25.76906024589465 30.429569599099636 22.325821069863412 39 22.363975666319934 25.388899783435363 30.359655031291034 21.88746951895367 40 21.202392016097402 25.736714100574666 30.122734171171324 22.938159712156608 41 21.524734409903996 25.47677259007895 30.266400081851202 22.73209291816585 42 20.192307692307693 26.66334856675136 30.462395341302457 22.68194839963849 43 20.35755546271507 26.181193833876165 30.126677523319067 23.334573180089695 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 115.0 1 194.5 2 274.0 3 789.5 4 1305.0 5 1305.0 6 2108.5 7 2912.0 8 3006.0 9 3100.0 10 4533.0 11 5966.0 12 5966.0 13 10508.0 14 15050.0 15 24358.5 16 33667.0 17 33522.0 18 33377.0 19 33377.0 20 36988.5 21 40600.0 22 35079.5 23 29559.0 24 32929.5 25 36300.0 26 36300.0 27 39467.0 28 42634.0 29 48186.0 30 53738.0 31 56267.5 32 58797.0 33 58797.0 34 63512.0 35 68227.0 36 75948.5 37 83670.0 38 88309.5 39 92949.0 40 92949.0 41 99714.0 42 106479.0 43 114841.5 44 123204.0 45 142446.0 46 161688.0 47 161688.0 48 165534.0 49 169380.0 50 158495.5 51 147611.0 52 140660.5 53 133710.0 54 133710.0 55 119832.0 56 105954.0 57 93721.5 58 81489.0 59 74341.0 60 67193.0 61 67193.0 62 60255.0 63 53317.0 64 47242.5 65 41168.0 66 35222.5 67 29277.0 68 29277.0 69 24910.5 70 20544.0 71 17510.5 72 14477.0 73 11322.0 74 8167.0 75 8167.0 76 6245.0 77 4323.0 78 3466.5 79 2610.0 80 2114.5 81 1619.0 82 1619.0 83 1213.0 84 807.0 85 683.0 86 559.0 87 477.5 88 396.0 89 396.0 90 340.0 91 284.0 92 171.0 93 58.0 94 35.0 95 12.0 96 12.0 97 8.0 98 4.0 99 5.0 100 6.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1876576.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.70360763545883 #Duplication Level Percentage of deduplicated Percentage of total 1 78.0209071691097 36.438578357886556 2 12.112424038641588 11.313877996300327 3 3.90336388771599 5.469035264109203 4 1.7366848002313597 3.244377819858825 5 0.9771877590012549 2.2819096841283955 6 0.5814169091170097 1.629256031761323 7 0.4131477484076762 1.3506843235973758 8 0.29511100826368497 1.102619899108143 9 0.2393525022755039 1.006076281755636 >10 1.4581148961630293 13.046059358102044 >50 0.14922232534690827 4.8238830395055246 >100 0.10105115993477179 9.015235427688086 >500 0.008010530527665817 2.657058477643487 >1k 0.003433084511856778 3.4362983972661776 >5k 2.288723007904519E-4 0.714623934518175 >10k+ 3.4330845118567786E-4 2.470425706770892 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 16188 0.8626349265897038 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 15565 0.829436164589124 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 14470 0.7710852105110584 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 8028 0.4278004194874068 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5343 0.28472068277543783 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 4643 0.24741870299950547 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 4428 0.23596166635404056 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 4063 0.2165113483280187 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 3972 0.2116620909571475 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 3440 0.1833125863274389 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 3347 0.17835675187149364 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 3032 0.16157086097232407 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 2840 0.15133946080521118 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 2694 0.14355933359480247 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 2588 0.13791074808587556 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 2231 0.11888673840015007 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2022 0.1077494330099074 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 2009 0.10705668195692579 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 1899 0.10119494227785071 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 1.0657708507409239E-4 0.0 0.0 0.0 0.0 9 1.0657708507409239E-4 0.0 0.0 5.3288542537046195E-5 0.0 10 1.0657708507409239E-4 0.0 0.0 1.5986562761113857E-4 0.0 11 1.0657708507409239E-4 0.0 0.0 4.7959688283341574E-4 0.0 12 1.0657708507409239E-4 0.0 0.0 6.927510529816006E-4 0.0 13 1.0657708507409239E-4 5.3288542537046195E-5 0.0 7.993281380556929E-4 0.0 14 1.0657708507409239E-4 5.3288542537046195E-5 0.0 0.0010657708507409238 0.0 15 1.0657708507409239E-4 5.3288542537046195E-5 0.0 0.001332213563426155 0.0 16 1.0657708507409239E-4 5.3288542537046195E-5 0.0 0.00223811878655594 0.0 17 1.0657708507409239E-4 5.3288542537046195E-5 0.0 0.0028242927544634483 0.0 18 1.0657708507409239E-4 5.3288542537046195E-5 0.0 0.003303889637296864 0.0 19 1.0657708507409239E-4 5.3288542537046195E-5 0.0 0.003836775062667326 0.0 20 1.0657708507409239E-4 5.3288542537046195E-5 0.0 0.004689391743260065 0.0 21 1.0657708507409239E-4 5.3288542537046195E-5 0.0 0.0064479136469825895 0.0 22 1.0657708507409239E-4 5.3288542537046195E-5 0.0 0.010497842879798101 0.0 23 1.0657708507409239E-4 5.3288542537046195E-5 0.0 0.016999045069317736 0.0 24 1.0657708507409239E-4 5.3288542537046195E-5 0.0 0.027230445236430607 0.0 25 1.0657708507409239E-4 5.3288542537046195E-5 0.0 0.032559299490135224 0.0 26 1.0657708507409239E-4 5.3288542537046195E-5 0.0 0.04135190900874785 0.0 27 1.0657708507409239E-4 5.3288542537046195E-5 0.0 0.10860204969050015 0.0 28 1.0657708507409239E-4 5.3288542537046195E-5 0.0 0.18176721859386458 0.0 29 1.0657708507409239E-4 5.3288542537046195E-5 0.0 0.27001304503521306 0.0 30 1.0657708507409239E-4 5.3288542537046195E-5 0.0 0.40946916085466295 0.0 31 1.0657708507409239E-4 5.3288542537046195E-5 0.0 0.6313626519789233 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 4025 0.0 28.221117 1 CGAACGA 100 1.2911187E-8 20.35 16 ATTGGAC 475 0.0 19.473684 3 GTATTGG 545 0.0 16.972477 1 GTATCAA 6855 0.0 16.678337 2 ACGAACG 125 1.6592458E-7 16.28 15 ACGTTTA 80 3.3839917E-4 16.1875 26 TTGGACC 895 0.0 15.502793 4 TGGACCC 830 0.0 15.3795185 5 TCCGATA 145 5.350921E-8 15.310345 8 AACGAAC 145 5.350921E-8 15.310345 14 GGACCCT 860 0.0 15.273257 6 CGATAAC 135 3.975747E-7 15.074073 10 TAACGAA 150 8.109055E-8 14.8 13 CCGCCTA 75 0.0041056927 14.8 9 CTAGATC 80 0.006300579 13.875001 3 TATTGGA 885 0.0 13.79661 2 CCGATAA 150 1.3066419E-6 13.566667 9 ATTGACG 205 1.4242687E-9 13.536585 32 CTCGTTA 110 2.4576587E-4 13.454545 11 >>END_MODULE