##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088382_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2261809 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.386145337647875 31.0 31.0 34.0 30.0 34.0 2 31.632934964888722 31.0 31.0 34.0 30.0 34.0 3 31.722179901132236 31.0 31.0 34.0 30.0 34.0 4 35.50885552228327 37.0 35.0 37.0 33.0 37.0 5 35.315803854348445 37.0 35.0 37.0 33.0 37.0 6 35.35721318643617 37.0 35.0 37.0 32.0 37.0 7 35.232969715833654 37.0 35.0 37.0 32.0 37.0 8 35.24554593248148 37.0 35.0 37.0 32.0 37.0 9 36.778773097109436 39.0 37.0 39.0 32.0 39.0 10 36.65305514302932 39.0 35.0 39.0 32.0 39.0 11 36.76776023085946 39.0 35.0 39.0 32.0 39.0 12 36.62302652434401 39.0 35.0 39.0 32.0 39.0 13 36.66570033101822 39.0 35.0 39.0 32.0 39.0 14 37.693712864348846 39.0 37.0 41.0 32.0 41.0 15 37.68475189549604 39.0 36.0 41.0 32.0 41.0 16 37.65092852667931 39.0 36.0 41.0 32.0 41.0 17 37.68460555245823 39.0 37.0 41.0 32.0 41.0 18 37.65212137718083 39.0 36.0 41.0 32.0 41.0 19 37.71690005654766 40.0 37.0 41.0 32.0 41.0 20 37.679724503704776 39.0 37.0 41.0 32.0 41.0 21 37.62617179434692 39.0 37.0 41.0 32.0 41.0 22 37.528759943920996 39.0 36.0 41.0 32.0 41.0 23 37.423733392165296 39.0 36.0 41.0 32.0 41.0 24 37.35332337964877 39.0 36.0 41.0 31.0 41.0 25 37.30306405182754 39.0 36.0 41.0 31.0 41.0 26 37.08098782876892 39.0 36.0 41.0 31.0 41.0 27 36.94234305372381 39.0 35.0 40.0 31.0 41.0 28 36.848507102058576 39.0 35.0 40.0 30.0 41.0 29 36.70564623272787 39.0 35.0 40.0 30.0 41.0 30 36.54012783572795 38.0 35.0 40.0 30.0 41.0 31 36.31380235908514 38.0 35.0 40.0 30.0 41.0 32 36.1789819564782 38.0 35.0 40.0 30.0 41.0 33 36.254258869780784 38.0 35.0 40.0 30.0 41.0 34 36.22375010445179 38.0 35.0 40.0 30.0 41.0 35 36.175799548060866 38.0 35.0 40.0 30.0 41.0 36 36.106063774615805 38.0 35.0 40.0 30.0 41.0 37 36.002264116908194 38.0 35.0 40.0 29.0 41.0 38 35.88845963562794 38.0 35.0 40.0 29.0 41.0 39 35.85413976158022 38.0 35.0 40.0 28.0 41.0 40 35.71446660615463 38.0 35.0 40.0 27.0 41.0 41 35.588412637848734 38.0 35.0 40.0 27.0 41.0 42 35.475632999957114 38.0 34.0 40.0 26.0 41.0 43 35.151209938593404 38.0 34.0 40.0 25.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 2.0 14 5.0 15 3.0 16 19.0 17 43.0 18 82.0 19 234.0 20 609.0 21 1190.0 22 2287.0 23 3908.0 24 6457.0 25 10491.0 26 16316.0 27 23891.0 28 34058.0 29 46536.0 30 60912.0 31 76777.0 32 94877.0 33 117754.0 34 145391.0 35 178145.0 36 227809.0 37 306471.0 38 414835.0 39 492707.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.317547149206675 21.793705834577544 13.295773427376052 23.59297358883973 2 18.08667310104434 22.73728683544897 35.707435950604136 23.46860411290255 3 19.5813616445951 25.686740127039904 31.57998752326125 23.151910705103745 4 13.334061364155858 16.11166106421895 35.787239329227184 34.76703824239801 5 12.400914489242902 39.265384477645995 34.61189693736297 13.721804095748139 6 31.797114610473297 36.59822734810941 15.930257594695219 15.67440044672207 7 25.719545726451702 33.83106177400479 22.03877515740719 18.41061734213632 8 27.300448446354224 33.513395693447144 20.502571172013198 18.68358468818543 9 25.908155816870476 13.74647461390418 22.5137489505082 37.831620618717146 10 16.127754377137947 27.380296037375395 34.144085552758874 22.347864032727784 11 32.711161729394476 22.167035324379732 24.332779646734096 20.789023299491692 12 20.5238373355133 26.870306024956133 31.526667371117544 21.079189268413025 13 30.3910719251714 21.139716041451777 27.56673972028584 20.902472313090982 14 21.221951101971918 22.143646965769435 27.897050546708407 28.737351385550237 15 23.39025974341777 28.96128718207417 25.615956077635204 22.032496996872858 16 22.582985565978383 28.018015667989648 26.437201372883383 22.96179739314858 17 20.59762782799078 27.150170505113387 27.50484236290509 24.74735930399074 18 21.315725598403755 26.536944543062656 30.589718229965484 21.557611628568107 19 21.00774203303639 25.54512781583237 31.456855994471685 21.99027415665956 20 23.961528139643974 24.8318934092136 30.434134800949153 20.772443650193274 21 23.61932417812468 25.553970295458196 29.527515364913658 21.29919016150347 22 22.633034000660533 25.224057380618785 30.191099248433446 21.951809370287233 23 21.7913625774767 26.382908547980843 30.85225145005613 20.97347742448633 24 20.915647607733455 26.065375104617587 29.798670002639483 23.22030728500948 25 21.870546982525934 26.407136942155596 30.547274327761542 21.175041747556932 26 22.604428579071 25.99189409892701 29.592153890978416 21.811523431023573 27 21.754135738251993 26.869952325771095 29.32794059975887 22.047971336218044 28 21.479488321073973 26.58721403973545 29.48392194035836 22.44937569883222 29 20.806177709965784 26.47327868975674 30.27112368904713 22.449419911230347 30 20.521980414791877 26.871676609298135 31.24574179340519 21.3606011825048 31 21.41661829093438 26.347980753458845 30.63499172564969 21.600409229957084 32 22.090989999597667 26.507145386723636 29.262329400935265 22.13953521274343 33 22.564593208356673 26.35363994041937 29.136943039841118 21.944823811382836 34 21.563093965936115 27.926142304677366 29.18429451823739 21.326469211149128 35 20.729159712424877 28.446345381064447 29.524287859850233 21.30020704666044 36 21.28880024794313 26.26141287792205 30.66961003338478 21.780176840750038 37 21.3979606589239 26.247353335316998 30.15877998540107 22.19590602035804 38 21.389427666084977 25.98424535405067 30.66823944904278 21.95808753082157 39 21.963171956606413 25.5933193297931 30.719393193678158 21.72411551992233 40 20.813605392851475 25.936451751673108 30.40897794641369 22.84096490906173 41 21.24821326646061 25.519661474510002 30.513584480387156 22.71854077864223 42 19.687736674493735 26.748545080508567 30.71797839693803 22.845739848059672 43 20.043160143053633 26.329765245429655 30.552447178342646 23.074627433174065 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 230.0 1 331.5 2 433.0 3 1133.5 4 1834.0 5 1834.0 6 2838.0 7 3842.0 8 4021.5 9 4201.0 10 6137.0 11 8073.0 12 8073.0 13 14122.0 14 20171.0 15 32096.5 16 44022.0 17 44072.5 18 44123.0 19 44123.0 20 47634.5 21 51146.0 22 43648.0 23 36150.0 24 40673.0 25 45196.0 26 45196.0 27 50601.0 28 56006.0 29 59895.0 30 63784.0 31 68532.5 32 73281.0 33 73281.0 34 80038.5 35 86796.0 36 94627.0 37 102458.0 38 107342.0 39 112226.0 40 112226.0 41 118075.5 42 123925.0 43 136491.5 44 149058.0 45 173524.0 46 197990.0 47 197990.0 48 200715.5 49 203441.0 50 188630.0 51 173819.0 52 165623.5 53 157428.0 54 157428.0 55 141697.5 56 125967.0 57 111002.5 58 96038.0 59 86846.0 60 77654.0 61 77654.0 62 69734.5 63 61815.0 64 54179.5 65 46544.0 66 40048.5 67 33553.0 68 33553.0 69 28247.5 70 22942.0 71 19476.0 72 16010.0 73 12775.5 74 9541.0 75 9541.0 76 7444.0 77 5347.0 78 4189.5 79 3032.0 80 2411.0 81 1790.0 82 1790.0 83 1331.0 84 872.0 85 695.0 86 518.0 87 414.5 88 311.0 89 311.0 90 249.0 91 187.0 92 108.5 93 30.0 94 25.0 95 20.0 96 20.0 97 12.0 98 4.0 99 2.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2261809.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 48.66236400842493 #Duplication Level Percentage of deduplicated Percentage of total 1 75.72475290987461 36.84945490548353 2 13.393062431301441 13.034761584391028 3 4.609782073339215 6.7296867975703405 4 2.0621359464048283 4.013936402352384 5 1.0692417997804569 2.6015916836970003 6 0.6686656291296846 1.952331014677871 7 0.43203369345443926 1.4716646598348937 8 0.2986397488564053 1.1626012932988 9 0.21814637496562228 0.9553966475125921 >10 1.321992576876428 11.89191059101247 >50 0.12283169945081279 4.124949135985688 >100 0.06942592234350914 6.169747076965991 >500 0.004644597111290212 1.6129198932586877 >1k 0.004098173921726639 3.870697524305718 >5k 2.732115947817759E-4 0.9486955943120927 >10k+ 2.732115947817759E-4 2.609655195340865 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 20712 0.9157271900500882 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 19890 0.8793845987879613 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 18284 0.8083794873926137 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 9298 0.4110868778044477 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6991 0.30908887532059515 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 5118 0.22627905362477557 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 4791 0.21182159943655718 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 4741 0.20961097953010177 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 4625 0.20448234134712523 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 4020 0.1777338404790148 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 3777 0.16699022773364153 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 3548 0.15686558856207575 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 3398 0.15023372884270952 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 3185 0.1408164880412095 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 2940 0.129984450499578 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 2656 0.11742812943091127 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 2626 0.11610175748703803 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2601 0.11499644753381033 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 8.842479625821632E-5 0.0 0.0 0.0 0.0 9 8.842479625821632E-5 0.0 0.0 0.0 0.0 10 8.842479625821632E-5 0.0 0.0 4.421239812910816E-5 0.0 11 8.842479625821632E-5 0.0 0.0 1.7684959251643265E-4 0.0 12 8.842479625821632E-5 0.0 0.0 3.0948678690375715E-4 0.0 13 8.842479625821632E-5 0.0 0.0 3.9791158316197344E-4 0.0 14 8.842479625821632E-5 0.0 0.0 4.863363794201898E-4 0.0 15 8.842479625821632E-5 0.0 0.0 8.842479625821632E-4 0.0 16 8.842479625821632E-5 0.0 0.0 0.0016800711289061102 0.0 17 8.842479625821632E-5 0.0 0.0 0.002254832304584516 0.0 18 8.842479625821632E-5 0.0 0.0 0.0026085314896173817 0.0 19 8.842479625821632E-5 0.0 0.0 0.0028738058783920307 0.0 20 8.842479625821632E-5 0.0 0.0 0.0036254166465868693 0.0 21 8.842479625821632E-5 0.0 0.0 0.005393912571751196 0.0 22 8.842479625821632E-5 0.0 0.0 0.008356143246401443 0.0 23 8.842479625821632E-5 0.0 0.0 0.014722728576993017 0.0 24 8.842479625821632E-5 0.0 0.0 0.023211509017781785 0.0 25 8.842479625821632E-5 0.0 0.0 0.02962230674650247 0.0 26 8.842479625821632E-5 0.0 0.0 0.038862697955486074 0.0 27 8.842479625821632E-5 0.0 0.0 0.11207842925728918 0.0 28 8.842479625821632E-5 0.0 0.0 0.18498467377218855 0.0 29 8.842479625821632E-5 0.0 0.0 0.27177361129962785 0.0 30 8.842479625821632E-5 0.0 0.0 0.42006199462465665 0.0 31 8.842479625821632E-5 0.0 0.0 0.6474021458045308 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 4960 0.0 28.085686 1 TCTAACG 85 2.725004E-5 17.411764 2 GTATTGG 725 0.0 16.331036 1 GTATCAA 8600 0.0 16.176744 2 ATTGGAC 705 0.0 15.74468 3 CGTTTAG 155 7.219569E-9 15.5161295 26 TTGGACC 1045 0.0 15.401914 4 GTCTATA 145 5.3525582E-8 15.310345 1 TTACGCT 75 0.0041060387 14.8 4 CGCCCAA 100 1.0941071E-4 14.8 21 ACGCCTA 115 2.2116046E-5 14.47826 6 GTATACG 155 1.2116652E-7 14.322581 1 TAATACG 80 0.0063011055 13.875001 4 AATACGC 80 0.0063011055 13.875001 5 GGACCCT 1095 0.0 13.853881 6 TATACGG 175 3.5704943E-8 13.742857 2 GCGTGCG 245 7.2759576E-12 13.591836 9 CCCGTAT 110 2.458008E-4 13.454545 1 AATGCGT 165 2.5981353E-7 13.454544 35 TAACACT 235 5.638867E-11 13.3829775 4 >>END_MODULE