##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088381_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2284611 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.400968917684455 31.0 31.0 34.0 30.0 34.0 2 31.64007220485238 31.0 31.0 34.0 30.0 34.0 3 31.7301015358851 31.0 31.0 34.0 30.0 34.0 4 35.51527853100593 37.0 35.0 37.0 33.0 37.0 5 35.32531577585856 37.0 35.0 37.0 33.0 37.0 6 35.36788100906456 37.0 35.0 37.0 33.0 37.0 7 35.2433416454705 37.0 35.0 37.0 32.0 37.0 8 35.26110615767848 37.0 35.0 37.0 32.0 37.0 9 36.79411462170146 39.0 37.0 39.0 32.0 39.0 10 36.66032029085039 39.0 35.0 39.0 32.0 39.0 11 36.77673441999535 39.0 35.0 39.0 32.0 39.0 12 36.6372117616522 39.0 35.0 39.0 32.0 39.0 13 36.68770788549998 39.0 35.0 39.0 32.0 39.0 14 37.71967569096008 40.0 37.0 41.0 32.0 41.0 15 37.707442973880454 39.0 37.0 41.0 32.0 41.0 16 37.669825191247 39.0 36.0 41.0 32.0 41.0 17 37.71123092727821 39.0 37.0 41.0 32.0 41.0 18 37.6813299944717 39.0 37.0 41.0 32.0 41.0 19 37.74063505778445 40.0 37.0 41.0 32.0 41.0 20 37.70590660729551 39.0 37.0 41.0 32.0 41.0 21 37.65968385865252 39.0 37.0 41.0 32.0 41.0 22 37.56000124310003 39.0 36.0 41.0 32.0 41.0 23 37.46619621458533 39.0 36.0 41.0 32.0 41.0 24 37.391778293985276 39.0 36.0 41.0 32.0 41.0 25 37.3423961453394 39.0 36.0 41.0 31.0 41.0 26 37.12819293962955 39.0 36.0 41.0 31.0 41.0 27 36.988643580898454 39.0 36.0 40.0 31.0 41.0 28 36.89578138247605 39.0 35.0 40.0 31.0 41.0 29 36.75674545907378 39.0 35.0 40.0 30.0 41.0 30 36.59658909109691 38.0 35.0 40.0 30.0 41.0 31 36.377125908962185 38.0 35.0 40.0 30.0 41.0 32 36.244266091689134 38.0 35.0 40.0 30.0 41.0 33 36.32303179841119 38.0 35.0 40.0 30.0 41.0 34 36.29733552013888 38.0 35.0 40.0 30.0 41.0 35 36.246566264453776 38.0 35.0 40.0 30.0 41.0 36 36.17247137477671 38.0 35.0 40.0 30.0 41.0 37 36.07170892550198 38.0 35.0 40.0 29.0 41.0 38 35.96508683535184 38.0 35.0 40.0 29.0 41.0 39 35.92640760286981 38.0 35.0 40.0 28.0 41.0 40 35.78772491246869 38.0 35.0 40.0 27.0 41.0 41 35.66340921933756 38.0 35.0 40.0 27.0 41.0 42 35.54834192779427 38.0 35.0 40.0 26.0 41.0 43 35.22107964988351 38.0 34.0 40.0 25.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 3.0 15 7.0 16 15.0 17 42.0 18 132.0 19 256.0 20 594.0 21 1161.0 22 2185.0 23 3848.0 24 6440.0 25 10397.0 26 15783.0 27 23702.0 28 33673.0 29 46018.0 30 60613.0 31 76037.0 32 94435.0 33 117135.0 34 145950.0 35 180433.0 36 228662.0 37 309341.0 38 418020.0 39 509729.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.161624451602485 21.96584013646087 13.392958363590127 23.479577048346524 2 17.898408087853905 22.808565659536786 36.07410627017028 23.218919982439022 3 19.534266446235268 25.78228853839888 31.83955605571364 22.84388895965221 4 13.189860330708377 16.099370965122727 36.011469786322486 34.69929891784641 5 12.226326494970042 39.41874568580822 34.805487673831564 13.549440145390179 6 31.69716857705754 36.740740546202396 15.960135007666512 15.601955869073553 7 25.481843517342778 34.04058721594179 22.12875627404403 18.3488129926714 8 27.066620969609268 33.78185607965645 20.542928314710906 18.608594636023376 9 25.87954798431768 13.79355172499826 22.63584478933175 37.69105550135231 10 15.996158645826359 27.48130863416135 34.324530521826254 22.198002198186035 11 32.5451466354666 22.28256801704973 24.32672345532784 20.84556189215582 12 20.34600201084561 27.06395093081492 31.67059950249736 20.919447555842112 13 30.387142493842497 21.28182872270159 27.513349099693556 20.817679683762353 14 21.17638407588863 22.234594861006972 28.0060369139429 28.5829841491615 15 23.263435219387457 29.12758452095346 25.63219734125416 21.97678291840493 16 22.32804621880924 28.251549169639823 26.5058252805401 22.914579331010838 17 20.3172881510244 27.309025475234076 27.614285320345566 24.759401053395962 18 21.16684197003341 26.625758170646996 30.795702200505907 21.41169765881369 19 20.87038012160495 25.58619388596133 31.743784828139233 21.79964116429449 20 23.82418713732885 24.8976740460411 30.60888702715692 20.66925178947313 21 23.499799309379146 25.579321818900457 29.744932507109525 21.17594636461087 22 22.32620783144264 25.411109374856377 30.42548600177448 21.8371967919265 23 21.610681205684468 26.578485352648656 30.99083388813238 20.819999553534497 24 20.71188486792719 26.230855055849773 29.962737638924086 23.094522437298952 25 21.65861059059945 26.607374296980975 30.688769335348553 21.04524577707102 26 22.40845378053419 26.090831218093584 29.87256911570504 21.628145885667188 27 21.502960460227147 26.98446256277327 29.582410309676355 21.930166667323235 28 21.36350564713205 26.6384517977021 29.728737189832316 22.26930536533353 29 20.620753379897057 26.663182484895675 30.48891036592225 22.227153769285014 30 20.315931246063336 27.035806095654795 31.515956108063907 21.132306550217958 31 21.320609941911336 26.552091362599583 30.687106032493062 21.44019266299602 32 21.813297756160676 26.762149004797752 29.49876368449596 21.92578955454561 33 22.397598540845685 26.487704033640735 29.30083064469181 21.813866780821765 34 21.31776481860588 28.219727559746495 29.45000264815323 21.012504973494394 35 20.542928314710906 28.7915098018875 29.639356546913238 21.026205336488356 36 21.139878955323248 26.575377602576545 30.757927717235013 21.526815724865195 37 21.149202205539584 26.66782222443996 30.24545535323081 21.93752021678964 38 21.25320240513593 26.357309843995324 30.734772790641387 21.654714960227363 39 21.768870061467798 25.91666590067193 30.8653420647979 21.449121973062375 40 20.71709363213256 26.31266329366356 30.498146073883035 22.472097000320844 41 21.15427965636163 25.823433398508545 30.5834997730467 22.438787172083124 42 19.508091311825076 27.001051820200463 30.92023105902931 22.570625808945156 43 19.91187996556088 26.640115100557598 30.69463466647057 22.75337026741095 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 210.0 1 288.5 2 367.0 3 1009.5 4 1652.0 5 1652.0 6 2665.0 7 3678.0 8 3903.5 9 4129.0 10 6155.0 11 8181.0 12 8181.0 13 14357.5 14 20534.0 15 32964.0 16 45394.0 17 45101.0 18 44808.0 19 44808.0 20 48477.5 21 52147.0 22 44967.5 23 37788.0 24 42836.0 25 47884.0 26 47884.0 27 53698.0 28 59512.0 29 63926.5 30 68341.0 31 73566.0 32 78791.0 33 78791.0 34 85392.0 35 91993.0 36 99849.5 37 107706.0 38 112300.5 39 116895.0 40 116895.0 41 121786.0 42 126677.0 43 137409.0 44 148141.0 45 172226.5 46 196312.0 47 196312.0 48 199944.5 49 203577.0 50 188929.0 51 174281.0 52 165659.0 53 157037.0 54 157037.0 55 141767.5 56 126498.0 57 110654.5 58 94811.0 59 85377.0 60 75943.0 61 75943.0 62 67121.0 63 58299.0 64 51044.0 65 43789.0 66 37438.5 67 31088.0 68 31088.0 69 26508.5 70 21929.0 71 18697.5 72 15466.0 73 12381.5 74 9297.0 75 9297.0 76 7193.5 77 5090.0 78 3961.0 79 2832.0 80 2264.0 81 1696.0 82 1696.0 83 1239.0 84 782.0 85 619.5 86 457.0 87 380.5 88 304.0 89 304.0 90 263.0 91 222.0 92 131.5 93 41.0 94 34.0 95 27.0 96 27.0 97 16.0 98 5.0 99 2.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2284611.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 48.342028334294966 #Duplication Level Percentage of deduplicated Percentage of total 1 74.79893252662254 36.159321155770044 2 13.861651052910767 13.40200655919844 3 4.800830472888725 6.962456482456004 4 2.2259077084666226 4.304195740488762 5 1.1437893697638617 2.764654906079499 6 0.6903153431109931 2.002274632576211 7 0.4458077260484116 1.5085874806995947 8 0.30727543058657014 1.1883454057478928 9 0.2196280042124416 0.9555536882378257 >10 1.3147175648432838 11.872697961870966 >50 0.11766603296971018 3.967159659213832 >100 0.06413902732361192 5.66778285579858 >500 0.004352500311918519 1.473343040415596 >1k 0.00435250031191848 3.9257878674701465 >5k 3.6270835932654004E-4 1.1828037029405185 >10k+ 2.72031269494905E-4 2.6630288610361874 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 21348 0.9344260357671395 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 20679 0.9051431512848358 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 18724 0.8195705964822896 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 9534 0.4173139322186578 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6928 0.3032463732337803 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 5362 0.2347007871361908 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 5159 0.22581524819761437 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 4997 0.21872432549786375 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 4858 0.21264013873696658 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 4174 0.18270068733801947 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 4002 0.17517205336050645 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 3788 0.1658050320163914 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 3644 0.15950198961661308 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 3211 0.1405490912895018 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 3085 0.13503392918969576 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 2767 0.12111471055685191 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 2767 0.12111471055685191 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2733 0.11962649221245981 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 2286 0.10006079809648119 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 4.3771127776238495E-5 0.0 6 0.0 0.0 0.0 4.3771127776238495E-5 0.0 7 0.0 0.0 0.0 4.3771127776238495E-5 0.0 8 0.0 0.0 0.0 4.3771127776238495E-5 0.0 9 0.0 0.0 0.0 8.754225555247699E-5 0.0 10 0.0 0.0 0.0 1.3131338332871548E-4 0.0 11 0.0 0.0 0.0 1.3131338332871548E-4 0.0 12 0.0 0.0 0.0 3.0639789443366946E-4 0.0 13 0.0 0.0 0.0 3.5016902220990796E-4 0.0 14 0.0 0.0 0.0 3.5016902220990796E-4 0.0 15 0.0 0.0 0.0 6.565669166435774E-4 0.0 16 0.0 0.0 0.0 0.0010942781944059624 0.0 17 0.0 0.0 0.0 0.0013569049610633933 0.0 18 0.0 0.0 0.0 0.0015757605999445858 0.0 19 0.0 0.0 0.0 0.0018821584943782552 0.0 20 0.0 0.0 0.0 0.002538725411021833 0.0 21 0.0 0.0 0.0 0.003545461349875318 0.0 22 0.0 0.0 0.0 0.006171729016449627 0.0 23 0.0 0.0 0.0 0.010636384049625953 0.0 24 0.0 0.0 0.0 0.017552222238271634 0.0 25 0.0 0.0 0.0 0.0214916237381331 0.0 26 0.0 0.0 0.0 0.030289620421157036 0.0 27 0.0 0.0 0.0 0.09581499870218606 0.0 28 0.0 0.0 0.0 0.1653235496108528 0.0 29 0.0 0.0 0.0 0.2450307732913831 0.0 30 0.0 0.0 0.0 0.3802397869921838 0.0 31 0.0 0.0 0.0 0.5886778974626314 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 4825 0.0 27.376165 1 GTATTGG 645 0.0 20.07752 1 ATTGGAC 670 0.0 19.604477 3 CTAGCGG 100 2.878005E-7 18.5 29 TAGGTCG 115 6.413029E-8 17.695652 21 ACGGTGT 155 4.0199666E-10 16.709679 29 CTGTGCG 235 0.0 16.531914 9 TTGGACC 1030 0.0 16.34466 4 GTATCAA 8325 0.0 15.866667 2 TGGACCC 1140 0.0 15.416666 5 CGCAATA 110 1.4530373E-5 15.136364 36 GGACCCT 1180 0.0 14.894068 6 CCGTCGA 75 0.004106055 14.8 9 ACGGACC 200 6.184564E-11 14.8 8 TATTGGA 940 0.0 14.170212 2 ACGTTTA 160 1.785611E-7 13.875 26 CCAACGG 80 0.006301135 13.875 31 CGACGAG 135 6.5732947E-6 13.703704 24 TAAACGT 245 7.2759576E-12 13.591836 4 GTCGTCA 150 1.3069985E-6 13.566667 24 >>END_MODULE