##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088377_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3078903 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.409691698634223 31.0 31.0 34.0 30.0 34.0 2 31.60900554515683 31.0 31.0 34.0 30.0 34.0 3 31.696078440925227 31.0 31.0 34.0 30.0 34.0 4 35.483775227735336 37.0 35.0 37.0 33.0 37.0 5 35.302605830713084 37.0 35.0 37.0 33.0 37.0 6 35.328924945021 37.0 35.0 37.0 32.0 37.0 7 35.215953864087304 37.0 35.0 37.0 32.0 37.0 8 35.24340000318295 37.0 35.0 37.0 32.0 37.0 9 36.75453854830763 39.0 37.0 39.0 32.0 39.0 10 36.61514766785443 39.0 35.0 39.0 32.0 39.0 11 36.721650211130395 39.0 35.0 39.0 32.0 39.0 12 36.59528020207197 39.0 35.0 39.0 32.0 39.0 13 36.62644357422108 39.0 35.0 39.0 32.0 39.0 14 37.64939590497005 39.0 36.0 41.0 32.0 41.0 15 37.63713244619918 39.0 36.0 41.0 32.0 41.0 16 37.59238404067943 39.0 36.0 41.0 32.0 41.0 17 37.6489411975629 39.0 36.0 41.0 32.0 41.0 18 37.62750369206175 39.0 36.0 41.0 32.0 41.0 19 37.681045489253805 40.0 37.0 41.0 32.0 41.0 20 37.64327489368778 39.0 37.0 41.0 32.0 41.0 21 37.591815331629476 39.0 36.0 41.0 32.0 41.0 22 37.482246761265294 39.0 36.0 41.0 32.0 41.0 23 37.381213698515346 39.0 36.0 41.0 32.0 41.0 24 37.30806459313593 39.0 36.0 41.0 31.0 41.0 25 37.245420528025726 39.0 36.0 41.0 31.0 41.0 26 37.03134265678393 39.0 36.0 41.0 31.0 41.0 27 36.86753658689475 39.0 35.0 40.0 31.0 41.0 28 36.75671887032492 39.0 35.0 40.0 30.0 41.0 29 36.612126461924916 39.0 35.0 40.0 30.0 41.0 30 36.43650904234398 38.0 35.0 40.0 30.0 41.0 31 36.21459461373093 38.0 35.0 40.0 30.0 41.0 32 36.068789435717854 38.0 35.0 40.0 30.0 41.0 33 36.14529980320913 38.0 35.0 40.0 30.0 41.0 34 36.118713061113 38.0 35.0 40.0 30.0 41.0 35 36.048592631856216 38.0 35.0 40.0 29.0 41.0 36 35.96895030470268 38.0 35.0 40.0 29.0 41.0 37 35.846948734662966 38.0 35.0 40.0 28.0 41.0 38 35.73532456202745 38.0 35.0 40.0 28.0 41.0 39 35.67388871945625 38.0 35.0 40.0 27.0 41.0 40 35.53580869549966 38.0 34.0 40.0 26.0 41.0 41 35.404956570570754 38.0 34.0 40.0 26.0 41.0 42 35.25562318786918 38.0 34.0 40.0 25.0 41.0 43 34.93008126595739 38.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 0.0 11 1.0 12 1.0 13 0.0 14 4.0 15 9.0 16 26.0 17 85.0 18 208.0 19 433.0 20 934.0 21 1860.0 22 3399.0 23 6019.0 24 10072.0 25 15864.0 26 24051.0 27 35176.0 28 49642.0 29 67398.0 30 86631.0 31 107032.0 32 130424.0 33 160398.0 34 196637.0 35 241202.0 36 305834.0 37 415169.0 38 555917.0 39 664476.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.64155220219669 21.769474387468524 13.28694018616371 23.302033224171076 2 18.098036865727828 22.8617790167472 35.640616154519975 23.399567963005005 3 19.69500175874329 25.923746217402755 31.683817255691395 22.697434768162555 4 13.184631019554693 16.084235196756765 35.85143799593556 34.87969578775297 5 12.311203048618289 39.47055168675337 34.41436771473476 13.803877549893581 6 31.595604018704066 36.71327092798961 15.867794470952804 15.82333058235352 7 25.428927121120736 34.29646857988056 21.967174672277757 18.307429626720946 8 27.51028531915426 33.35476953967046 20.43861076493803 18.69633437623725 9 25.951191057334384 13.684127106310267 22.64095361237428 37.72372822398108 10 16.374955625428928 27.289362477479806 33.77638074340114 22.55930115369013 11 32.654715007260705 22.190825758395118 24.253930701941567 20.900528532402614 12 20.450887864931115 27.12008140561752 31.49949836029261 20.929532369158753 13 30.371174408547457 20.92972724376182 27.8129905359149 20.886107811775815 14 21.172378603678 22.324802048002162 28.070452365664007 28.43236698265584 15 23.450397755304405 28.85004821522471 25.85362383939994 21.845930190070945 16 22.46413738919349 28.03157488235258 26.621754566480334 22.882533161973598 17 20.487167020201678 27.10569316409124 27.63887007807651 24.768269737630575 18 21.311226758361663 26.206606703751305 30.89405544767081 21.588111090216223 19 20.957854144804173 25.415415815308247 31.856346237604754 21.770383802282826 20 24.00803143197431 24.47264496478129 30.807368728407486 20.711954874836913 21 23.65998539090059 25.35354312883517 29.90987374399258 21.07659773627165 22 22.60051713223833 24.923422400770665 30.73562239537913 21.74043807161187 23 21.742029547536898 26.020306583221362 31.282408052478434 20.95525581676331 24 20.636376007948286 25.827088414282617 30.39462431911626 23.14191125865284 25 21.667912240171255 26.237137058231454 31.01247424813318 21.082476453464107 26 22.527601551591587 25.94044047506531 29.94917345561065 21.582784517732453 27 21.680351735666893 26.73390490054412 29.81042273822852 21.775320625560468 28 21.340782739826487 26.39378375999504 30.008220460339285 22.25721303983919 29 20.639591438898854 26.329085391777525 30.78729664429181 22.244026525031803 30 20.294468516871106 26.735918604775794 31.791940181291846 21.177672697061258 31 21.319898678198047 26.31024751348126 30.896004193701458 21.473849614619233 32 21.9802312706831 26.27731370556331 29.703923767653613 22.03853125609998 33 22.41408709530635 26.17178910800373 29.571376558469037 21.842747238220888 34 21.545401073044523 27.88454199434019 29.472770009318257 21.09728692329703 35 20.687498112152284 28.34616744990018 29.890191409083037 21.076143028864504 36 21.142952538615216 26.28234796614249 30.954791365626004 21.619908129616295 37 21.266535516058806 26.185787600323884 30.50547548915961 22.0422013944577 38 21.212685167411898 25.87856778859224 31.029168505795734 21.879578538200132 39 21.936579359596582 25.56004524988283 30.978371192596843 21.525004197923742 40 20.757847843858674 25.888473914248028 30.64867584331172 22.705002398581573 41 21.082151662459 25.6609902942704 30.688917448844606 22.567940594426002 42 19.66606288018817 26.712566131508524 30.998703109516608 22.622667878786697 43 19.93573685172933 26.272701673290776 30.717466578193598 23.074094896786292 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 239.0 1 382.0 2 525.0 3 1457.5 4 2390.0 5 2390.0 6 3969.5 7 5549.0 8 5833.5 9 6118.0 10 9020.5 11 11923.0 12 11923.0 13 21028.5 14 30134.0 15 48265.0 16 66396.0 17 65681.0 18 64966.0 19 64966.0 20 69928.5 21 74891.0 22 62724.0 23 50557.0 24 56790.0 25 63023.0 26 63023.0 27 68644.5 28 74266.0 29 79319.0 30 84372.0 31 90737.5 32 97103.0 33 97103.0 34 106294.0 35 115485.0 36 126837.5 37 138190.0 38 144995.5 39 151801.0 40 151801.0 41 160128.0 42 168455.0 43 184128.5 44 199802.0 45 234385.5 46 268969.0 47 268969.0 48 273689.0 49 278409.0 50 256362.5 51 234316.0 52 223032.0 53 211748.0 54 211748.0 55 190690.5 56 169633.0 57 149555.0 58 129477.0 59 117020.0 60 104563.0 61 104563.0 62 93402.5 63 82242.0 64 72793.5 65 63345.0 66 54577.5 67 45810.0 68 45810.0 69 38656.5 70 31503.0 71 26896.0 72 22289.0 73 17579.5 74 12870.0 75 12870.0 76 9891.0 77 6912.0 78 5625.0 79 4338.0 80 3621.5 81 2905.0 82 2905.0 83 2175.0 84 1445.0 85 1163.5 86 882.0 87 751.5 88 621.0 89 621.0 90 476.0 91 331.0 92 198.0 93 65.0 94 50.5 95 36.0 96 36.0 97 21.5 98 7.0 99 4.5 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3078903.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.59787906411692 #Duplication Level Percentage of deduplicated Percentage of total 1 73.80950563423421 32.179379004236 2 13.741651195945137 11.982136939641874 3 5.080153578498489 6.644517640275538 4 2.4254564628017774 4.229790301620507 5 1.314340605824548 2.8651231390898397 6 0.7675975987028868 2.0079376366893005 7 0.5183884555848361 1.582044603637542 8 0.3573451144875154 1.2463591268463767 9 0.2583485319242195 1.0137103246101844 >10 1.4692091263724676 11.975931441137137 >50 0.14018220927841937 4.272988858220446 >100 0.10370790225562872 8.635305403335066 >500 0.008288930338559507 2.369772341106252 >1k 0.005003228222342215 4.022580216464476 >5k 4.4805028856795953E-4 1.2421371928418625 >10k+ 3.7337524047329965E-4 3.7302858302475537 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 31882 1.0354986824852876 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 30931 1.004611057899518 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 28178 0.915196094193289 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 13100 0.4254762166914645 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10487 0.34060832705674715 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 7011 0.22771097368121046 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 6998 0.2272887453745701 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 6669 0.2166031213065173 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 6260 0.20331916919760057 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 5717 0.1856830176202368 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 5498 0.1785700946083719 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 4949 0.16073906842794333 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 4931 0.16015444461874895 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 4163 0.13521049542645547 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4049 0.1315078779682244 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 3978 0.12920186183195767 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 3753 0.12189406421702796 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 3730 0.12114704490527957 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 3.247910051079881E-5 0.0 2 0.0 0.0 0.0 3.247910051079881E-5 0.0 3 3.247910051079881E-5 0.0 0.0 3.247910051079881E-5 0.0 4 3.247910051079881E-5 0.0 0.0 3.247910051079881E-5 0.0 5 3.247910051079881E-5 0.0 0.0 3.247910051079881E-5 0.0 6 3.247910051079881E-5 0.0 0.0 3.247910051079881E-5 0.0 7 3.247910051079881E-5 0.0 0.0 3.247910051079881E-5 0.0 8 3.247910051079881E-5 0.0 0.0 6.495820102159763E-5 0.0 9 3.247910051079881E-5 0.0 0.0 6.495820102159763E-5 0.0 10 3.247910051079881E-5 0.0 0.0 1.2991640204319525E-4 0.0 11 3.247910051079881E-5 0.0 0.0 3.5727010561878696E-4 0.0 12 3.247910051079881E-5 0.0 0.0 6.495820102159763E-4 0.0 13 3.247910051079881E-5 0.0 0.0 6.82061110726775E-4 0.0 14 3.247910051079881E-5 0.0 0.0 8.444566132807692E-4 0.0 15 3.247910051079881E-5 0.0 0.0 0.0012666849199211537 0.0 16 3.247910051079881E-5 0.0 0.0 0.0018513087291155323 0.0 17 3.247910051079881E-5 0.0 0.0 0.002630807141374704 0.0 18 3.247910051079881E-5 0.0 0.0 0.002955598146482692 0.0 19 3.247910051079881E-5 0.0 0.0 0.0032479100510798813 0.0 20 3.247910051079881E-5 0.0 0.0 0.0038974920612958575 0.0 21 3.247910051079881E-5 0.0 0.0 0.005294093383260206 0.0 22 3.247910051079881E-5 0.0 0.0 0.00850952433382929 0.0 23 3.247910051079881E-5 0.0 0.0 0.013803617717089496 0.0 24 3.247910051079881E-5 0.0 0.0 0.022053309246832395 0.0 25 3.247910051079881E-5 0.0 0.0 0.027834589137754582 0.0 26 3.247910051079881E-5 0.0 0.0 0.036019322466475885 0.0 27 3.247910051079881E-5 0.0 0.0 0.10185445920186507 0.0 28 3.247910051079881E-5 0.0 0.0 0.17269137741591728 0.0 29 3.247910051079881E-5 0.0 0.0 0.2527198810745256 0.0 30 3.247910051079881E-5 0.0 0.0 0.3910158910495069 0.0 31 3.247910051079881E-5 0.0 0.0 0.6265868070543307 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7390 0.0 26.886333 1 ATTGGAC 875 0.0 20.085714 3 GTATTGG 940 0.0 18.696808 1 TGCGACG 105 4.803733E-7 17.619047 22 CGAACGA 205 0.0 17.146341 16 TTGGACC 1545 0.0 16.165049 4 GGACCCT 1485 0.0 16.070707 6 GTATCAA 12655 0.0 15.74437 2 TGGACCC 1630 0.0 14.981595 5 TCGACGG 75 0.0041064876 14.8 19 TATTGGA 1320 0.0 14.575759 2 ATAACGC 205 9.276846E-11 14.439024 3 CGCGATA 90 8.2795776E-4 14.388888 14 CGTCGTA 195 6.7484507E-10 14.23077 10 CAATGCG 130 4.449512E-6 14.230769 19 GTACTAG 275 0.0 14.127272 1 CGTATAC 105 1.6570564E-4 14.095238 3 CCGATAA 250 0.0 14.059999 9 CTAGTAC 395 0.0 14.050632 3 TCTATAC 320 0.0 13.875 3 >>END_MODULE