##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088375_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3551615 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.32569549345861 31.0 31.0 34.0 30.0 34.0 2 31.529364528531385 31.0 31.0 34.0 30.0 34.0 3 31.61137820400015 31.0 31.0 34.0 30.0 34.0 4 35.41274631400081 37.0 35.0 37.0 33.0 37.0 5 35.225502201111325 37.0 35.0 37.0 33.0 37.0 6 35.25397910528027 37.0 35.0 37.0 32.0 37.0 7 35.134868503483624 37.0 35.0 37.0 32.0 37.0 8 35.1610881246982 37.0 35.0 37.0 32.0 37.0 9 36.669289604869896 39.0 35.0 39.0 32.0 39.0 10 36.51612745187752 38.0 35.0 39.0 32.0 39.0 11 36.62619653312648 39.0 35.0 39.0 32.0 39.0 12 36.4804104611564 38.0 35.0 39.0 32.0 39.0 13 36.52303585833487 38.0 35.0 39.0 32.0 39.0 14 37.530228924024705 39.0 36.0 41.0 32.0 41.0 15 37.5200603105911 39.0 36.0 41.0 32.0 41.0 16 37.47342040170458 39.0 36.0 41.0 32.0 41.0 17 37.510285884027404 39.0 36.0 41.0 32.0 41.0 18 37.48578379131747 39.0 36.0 41.0 32.0 41.0 19 37.538671562092176 39.0 36.0 41.0 32.0 41.0 20 37.493398918520164 39.0 36.0 41.0 32.0 41.0 21 37.44306885740712 39.0 36.0 41.0 32.0 41.0 22 37.332616851770254 39.0 36.0 41.0 31.0 41.0 23 37.22324660752925 39.0 36.0 41.0 31.0 41.0 24 37.1477938909482 39.0 36.0 41.0 31.0 41.0 25 37.0799351844161 39.0 36.0 41.0 31.0 41.0 26 36.858040919412716 39.0 36.0 40.0 31.0 41.0 27 36.696548471610804 39.0 35.0 40.0 30.0 41.0 28 36.57881358199017 38.0 35.0 40.0 30.0 41.0 29 36.43055201647701 38.0 35.0 40.0 30.0 41.0 30 36.25328589951332 38.0 35.0 40.0 30.0 41.0 31 36.04050241932191 38.0 35.0 40.0 29.0 41.0 32 35.8996605769488 38.0 35.0 40.0 29.0 41.0 33 35.99364514453284 38.0 35.0 40.0 29.0 41.0 34 35.98472075379792 38.0 35.0 40.0 29.0 41.0 35 35.91317555534595 38.0 35.0 40.0 29.0 41.0 36 35.8405677417175 38.0 35.0 40.0 28.0 41.0 37 35.7243316068887 38.0 34.0 40.0 28.0 41.0 38 35.61848877200936 38.0 34.0 40.0 27.0 41.0 39 35.563678777119705 38.0 34.0 40.0 27.0 41.0 40 35.430262007565574 38.0 34.0 40.0 26.0 41.0 41 35.30430522452462 38.0 34.0 40.0 26.0 41.0 42 35.15003118299703 38.0 34.0 40.0 25.0 41.0 43 34.81785891770364 38.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 3.0 14 5.0 15 18.0 16 43.0 17 109.0 18 269.0 19 553.0 20 1241.0 21 2430.0 22 4421.0 23 7508.0 24 12320.0 25 19908.0 26 29786.0 27 42766.0 28 59944.0 29 81431.0 30 103903.0 31 128666.0 32 156519.0 33 191621.0 34 233394.0 35 284832.0 36 359994.0 37 484559.0 38 651510.0 39 693861.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.43881023140177 21.886803609062355 13.274552562707386 23.399833596828483 2 18.550912753775396 22.806638670013502 35.19534071119758 23.44710786501352 3 20.008981829393107 25.68383678974213 31.428575450886427 22.878605929978335 4 13.431804967599248 16.138292016448855 35.4439036888852 34.9859993270667 5 12.521514860141092 39.26686873436451 34.30661825676488 13.904998148729522 6 32.16975939115022 36.511953012925105 15.630044360100968 15.688243235823704 7 26.004282558779597 33.78992373891877 21.677743786981416 18.528049915320214 8 27.711815610644734 33.29468424927814 20.16195449112587 18.831545648951252 9 26.0374787244676 13.616622297180298 22.255114926589734 38.09078405176237 10 16.52915645417648 27.087395452491332 33.70221716036226 22.68123093296993 11 33.21134188249571 21.86458836332204 23.926129380577567 20.997940373604685 12 20.77528110451161 26.778718977141384 31.116998886422092 21.329001031924914 13 30.73936786504168 20.69483882684356 27.46007098179279 21.105722326321967 14 21.50666668543747 21.971919816759417 27.474768520799692 29.04664497700342 15 23.637753529028345 28.76711017382233 25.336107658065416 22.259028639083912 16 22.909352505831855 27.670876488583364 26.191352384760176 23.228418620824613 17 20.89612753634614 26.83643919737922 27.16882319733417 25.09861006894047 18 21.833222350958646 25.82315369205277 30.441615997229434 21.90200795975915 19 21.47454045553924 24.922774568752526 31.253922511308236 22.3487624644 20 24.34174312249498 24.156756855683962 30.284250967517597 21.217249054303462 21 24.203524312179105 24.966557467518296 29.336062608137425 21.49385561216517 22 23.047036348252835 24.67629515023447 30.09858895178672 22.17807954972597 23 22.126722631816794 25.783988410906023 30.784502261647166 21.304786695630014 24 21.277756738835713 25.440567178593398 29.708878918463853 23.572797164107033 25 22.226114035445846 25.866457935333642 30.334819511686938 21.572608517533574 26 23.002155357492295 25.4785498991304 29.49537041599385 22.023924327383458 27 22.219722576912194 26.311607536289827 29.203672132255328 22.26499775454265 28 21.892603787291133 25.923164532191695 29.529889923316578 22.654341757200598 29 21.168144632793815 25.918772164212616 30.195699702811257 22.71738350018231 30 20.83052357870997 26.380590238525294 31.119870819331485 21.669015363433257 31 21.911637381867124 25.853083737961462 30.303453499323545 21.93182538084787 32 22.48748808640576 25.88580124816457 29.033327092041226 22.593383573388444 33 22.882998297957407 25.771121025223735 29.013561436135394 22.33231924068346 34 22.084094137455775 27.455932019658665 29.018770334059298 21.441203508826266 35 21.232875748075173 28.1632158891096 29.32474381372981 21.279164549085415 36 21.58941777191503 26.030439673219085 30.411404389270796 21.968738165595088 37 21.826830892424994 26.041251655936804 29.864554575876046 22.267362875762153 38 21.788791859478014 25.634366337567556 30.410897577580904 22.165944225373526 39 22.514855917659997 25.303559085092274 30.333580638667197 21.848004358580532 40 21.36664587800198 25.791027462154542 29.94719303753363 22.895133622309853 41 21.726735583671093 25.495950433816727 30.029183906476348 22.74813007603583 42 20.314673747013682 26.639993355135623 30.34121097022059 22.704121927630105 43 20.562251257526505 26.161168933006536 30.013331963064687 23.263247846402273 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 272.0 1 391.5 2 511.0 3 1444.5 4 2378.0 5 2378.0 6 3960.5 7 5543.0 8 5841.0 9 6139.0 10 9236.0 11 12333.0 12 12333.0 13 21927.0 14 31521.0 15 51229.5 16 70938.0 17 69666.0 18 68394.0 19 68394.0 20 73721.5 21 79049.0 22 65735.0 23 52421.0 24 58829.5 25 65238.0 26 65238.0 27 72463.5 28 79689.0 29 85723.5 30 91758.0 31 98680.0 32 105602.0 33 105602.0 34 116264.5 35 126927.0 36 140694.5 37 154462.0 38 163482.0 39 172502.0 40 172502.0 41 182905.5 42 193309.0 43 210735.5 44 228162.0 45 268397.5 46 308633.0 47 308633.0 48 314813.5 49 320994.0 50 298537.5 51 276081.0 52 264825.0 53 253569.0 54 253569.0 55 228697.5 56 203826.0 57 180950.5 58 158075.0 59 144314.0 60 130553.0 61 130553.0 62 117037.0 63 103521.0 64 91729.0 65 79937.0 66 68887.0 67 57837.0 68 57837.0 69 49552.5 70 41268.0 71 35463.5 72 29659.0 73 23251.0 74 16843.0 75 16843.0 76 13045.0 77 9247.0 78 7563.5 79 5880.0 80 4827.5 81 3775.0 82 3775.0 83 2840.5 84 1906.0 85 1573.0 86 1240.0 87 1084.5 88 929.0 89 929.0 90 736.0 91 543.0 92 319.5 93 96.0 94 67.0 95 38.0 96 38.0 97 26.0 98 14.0 99 8.5 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3551615.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.78163129580517 #Duplication Level Percentage of deduplicated Percentage of total 1 73.6597583008453 31.512846209648878 2 13.480193677248497 11.534093513921787 3 5.1913341260992505 6.662812275483272 4 2.4247944495438425 4.149466484339982 5 1.339689563227006 2.8657052472408022 6 0.8091481194392884 2.0770005905727453 7 0.5540912174277357 1.6593448317766042 8 0.39239567125116454 1.342986154362984 9 0.2906303428151914 1.1190276152723677 >10 1.596872922459733 12.783791531435943 >50 0.14614794404459977 4.381161568281377 >100 0.10091207395008074 8.392424830696559 >500 0.008629758244883915 2.5628624447069828 >1k 0.004479569163877024 3.6329083140751735 >5k 5.928841540425473E-4 1.7576224894868173 >10k+ 3.29380085579193E-4 3.565945898697627 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 34709 0.9772737191390395 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 33909 0.9547487551437867 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 30274 0.8524009499903565 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 15904 0.44779628422562695 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11733 0.3303567531953773 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 9134 0.25717877641579956 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 8118 0.22857207214182843 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 8026 0.22598170128237438 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 7817 0.22009705443861455 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 6771 0.19064566401482144 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 6225 0.17527237608806134 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 5778 0.1626865524557138 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 5301 0.1492560426735443 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 5195 0.14627148494417327 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 4795 0.13500900294654686 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4295 0.12093090044951382 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 4211 0.11856577923001226 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 4034 0.11358213094606256 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 2.815620499406608E-5 0.0 6 0.0 0.0 0.0 5.631240998813216E-5 0.0 7 0.0 0.0 0.0 5.631240998813216E-5 0.0 8 0.0 0.0 0.0 5.631240998813216E-5 0.0 9 0.0 0.0 0.0 8.446861498219824E-5 0.0 10 0.0 0.0 0.0 1.1262481997626432E-4 0.0 11 0.0 0.0 0.0 2.2524963995252864E-4 0.0 12 0.0 0.0 0.0 2.815620499406608E-4 0.0 13 0.0 0.0 0.0 3.3787445992879297E-4 0.0 14 0.0 0.0 0.0 4.504992799050573E-4 0.0 15 0.0 0.0 0.0 7.602175348397841E-4 0.0 16 0.0 0.0 0.0 0.001379654044709238 0.0 17 0.0 0.0 0.0 0.0017175285046380309 0.0 18 0.0 0.0 0.0 0.0019709343495846257 0.0 19 0.0 0.0 0.0 0.0022524963995252862 0.0 20 0.0 0.0 0.0 0.0025903708594540793 0.0 21 0.0 0.0 0.0 0.0036039942392404583 0.0 22 0.0 0.0 0.0 0.006391458533653 0.0 23 0.0 0.0 0.0 0.010474108257792582 0.0 24 0.0 0.0 0.0 0.017287909866356574 0.0 25 0.0 0.0 0.0 0.02159580923044868 0.0 26 0.0 0.0 0.0 0.029282453193828724 0.0 27 0.0 0.0 0.0 0.0850035828770855 0.0 28 0.0 0.0 0.0 0.1461870163291911 0.0 29 0.0 0.0 0.0 0.21502893753968266 0.0 30 0.0 0.0 0.0 0.3355093387092914 0.0 31 0.0 0.0 0.0 0.5266899706190001 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8615 0.0 27.59431 1 ATTGGAC 1025 0.0 21.839024 3 GTATTGG 1120 0.0 19.986607 1 TTGGACC 1705 0.0 16.926687 4 GTATCAA 14150 0.0 16.839577 2 GGACCCT 1755 0.0 15.917379 6 TATTGGA 1535 0.0 15.547231 2 TGGACCC 1790 0.0 15.39944 5 CTAGTAC 385 0.0 15.376623 3 ACGGACC 440 0.0 14.715909 8 TAATACT 565 0.0 14.40708 4 GACGGAC 455 0.0 14.23077 7 GACGTAT 105 1.6571696E-4 14.095238 28 GTCGACG 160 1.7865568E-7 13.875 36 AAGACCG 285 0.0 13.631578 5 GACCGTG 300 0.0 13.566667 7 GACCCTC 1940 0.0 13.541237 7 TAGTAGT 315 0.0 13.507937 4 GAACCGT 195 1.0280928E-8 13.282052 6 TATACCG 225 4.0745363E-10 13.155556 5 >>END_MODULE