##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088374_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2993804 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.429459978007912 31.0 31.0 34.0 30.0 34.0 2 31.627897484270846 31.0 31.0 34.0 30.0 34.0 3 31.715051486336446 31.0 31.0 34.0 30.0 34.0 4 35.49870231985795 37.0 35.0 37.0 33.0 37.0 5 35.32610651866321 37.0 35.0 37.0 33.0 37.0 6 35.35234437524968 37.0 35.0 37.0 32.0 37.0 7 35.24094997534909 37.0 35.0 37.0 32.0 37.0 8 35.26690057198133 37.0 35.0 37.0 32.0 37.0 9 36.78750512725616 39.0 37.0 39.0 32.0 39.0 10 36.65047845483539 39.0 35.0 39.0 32.0 39.0 11 36.754060386050654 39.0 35.0 39.0 32.0 39.0 12 36.61807920625398 39.0 35.0 39.0 32.0 39.0 13 36.65502751683143 39.0 35.0 39.0 32.0 39.0 14 37.68651220988415 40.0 37.0 41.0 32.0 41.0 15 37.679776297980766 39.0 36.0 41.0 32.0 41.0 16 37.631840294154195 39.0 36.0 41.0 32.0 41.0 17 37.68284530316614 39.0 37.0 41.0 32.0 41.0 18 37.660991835136834 39.0 37.0 41.0 32.0 41.0 19 37.71215650723962 40.0 37.0 41.0 32.0 41.0 20 37.67062205809064 39.0 37.0 41.0 32.0 41.0 21 37.61900812478038 39.0 37.0 41.0 32.0 41.0 22 37.51616872714446 39.0 36.0 41.0 32.0 41.0 23 37.40957457468826 39.0 36.0 41.0 32.0 41.0 24 37.34370853936998 39.0 36.0 41.0 31.0 41.0 25 37.27964121899764 39.0 36.0 41.0 31.0 41.0 26 37.064822880856596 39.0 36.0 41.0 31.0 41.0 27 36.90938985985723 39.0 35.0 40.0 31.0 41.0 28 36.79496653755557 39.0 35.0 40.0 30.0 41.0 29 36.66261685801742 39.0 35.0 40.0 30.0 41.0 30 36.483839957458805 38.0 35.0 40.0 30.0 41.0 31 36.263236337448944 38.0 35.0 40.0 30.0 41.0 32 36.13573734285878 38.0 35.0 40.0 30.0 41.0 33 36.22402468565076 38.0 35.0 40.0 30.0 41.0 34 36.20006720546836 38.0 35.0 40.0 30.0 41.0 35 36.133053132402786 38.0 35.0 40.0 30.0 41.0 36 36.058712260388454 38.0 35.0 40.0 29.0 41.0 37 35.942517947066676 38.0 35.0 40.0 29.0 41.0 38 35.83389226549233 38.0 35.0 40.0 28.0 41.0 39 35.789897401433095 38.0 35.0 40.0 27.0 41.0 40 35.65728016930968 38.0 35.0 40.0 27.0 41.0 41 35.53436397305902 38.0 35.0 40.0 26.0 41.0 42 35.38478170247618 38.0 34.0 40.0 26.0 41.0 43 35.06345371974919 38.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 3.0 11 1.0 12 1.0 13 0.0 14 4.0 15 11.0 16 25.0 17 63.0 18 158.0 19 462.0 20 815.0 21 1673.0 22 3044.0 23 5355.0 24 9155.0 25 14525.0 26 22406.0 27 33241.0 28 46547.0 29 63631.0 30 82158.0 31 102362.0 32 124859.0 33 154132.0 34 189823.0 35 232737.0 36 297188.0 37 406921.0 38 552913.0 39 649591.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.39088597650347 22.01196203893107 13.341120527596328 23.256031456969126 2 18.104057580255756 22.78058283040573 35.96658298272031 23.148776606618203 3 19.784027277670816 25.85666930767679 31.653909207149166 22.70539420750323 4 13.136197292808749 16.01096798588017 35.85982916717327 34.99300555413781 5 12.2353367154296 39.4625032233239 34.58646591426827 13.715694146978224 6 31.734542408253848 36.61756080224357 15.759548721292377 15.88834806821021 7 25.543856578453365 34.0481207186576 21.918268530605207 18.489754172283824 8 27.284217670896293 33.63874188156606 20.415063911999585 18.661976535538063 9 25.771760609578987 13.78373467334535 22.629337124274002 37.81516759280167 10 16.367504352322328 27.197104419661404 34.01431757055572 22.421073657460543 11 32.59244760178021 22.039285136902752 24.324772095968875 21.043495165348165 12 20.481901954837394 26.91926391974892 31.44564574033571 21.153188385077982 13 30.571573823804098 20.849661500886498 27.820258106409103 20.7585065689003 14 21.226840501248578 22.13357988699327 27.875004509313232 28.764575102444915 15 23.383127285553766 28.81578085940162 25.8411038264362 21.959988028608418 16 22.54082097558825 28.03296408181698 26.43446264351307 22.991752299081703 17 20.445493425755327 26.956206885955126 27.526384492772404 25.071915195517143 18 21.461825824269056 26.19894288336845 30.836086797933334 21.50314449442916 19 20.987145451071612 25.08587736538531 31.752312442631514 22.174664740911563 20 24.204623949998062 24.32163227786455 30.705750944283594 20.767992827853792 21 23.856838991463704 25.160130723320567 29.740056463282166 21.242973821933568 22 22.637687704338695 24.79778235315338 30.61088835474867 21.95364158775925 23 21.7931768412361 26.059220977725992 31.341564110409365 20.80603807062854 24 20.806906530955267 25.541652025316285 30.22011461004127 23.431326833687173 25 21.885133428908507 26.125491181119404 30.83441668192039 21.154958708051698 26 22.737326825670618 25.670017142070755 29.83505266209812 21.757603370160506 27 21.779515292250263 26.61059307823759 29.651440107635636 21.958451521876515 28 21.540722104720285 26.097299622821 29.9059657880075 22.45601248445122 29 20.69013201933059 26.15638832735877 30.605610788147786 22.547868865162847 30 20.415264325921136 26.52722088687168 31.73915192844956 21.31836285875762 31 21.459988696654825 26.019772837500383 30.909338086260824 21.610900379583967 32 22.223732749371703 25.999297215181755 29.48730110588402 22.289668929562524 33 22.764349302759967 25.86515349702252 29.354126055012287 22.01637114520523 34 21.724969303267684 27.75275201716612 29.393240172035313 21.129038507530886 35 20.799023583374197 28.494684354754018 29.640851572113608 21.06544048975818 36 21.32784911771111 26.031797672793545 30.897747481131027 21.742605728364314 37 21.535811963642242 26.040716092302635 30.383485358426938 22.039986585628185 38 21.379856530354026 25.718584115727015 30.98716549246377 21.914393861455192 39 22.197712341890117 25.327008715333406 30.926239660311765 21.549039282464715 40 20.998268423717786 25.817822409215836 30.444945627703085 22.7389635393633 41 21.50177499929855 25.480191756040142 30.43846557757288 22.579567667088426 42 19.759309560679323 26.851791232826194 30.742192875685916 22.646706330808563 43 20.033609414644378 26.430187146519945 30.49681943106496 23.039384007770717 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 232.0 1 343.5 2 455.0 3 1278.5 4 2102.0 5 2102.0 6 3509.5 7 4917.0 8 5243.0 9 5569.0 10 8243.5 11 10918.0 12 10918.0 13 19014.5 14 27111.0 15 44011.5 16 60912.0 17 60269.5 18 59627.0 19 59627.0 20 64830.5 21 70034.0 22 58503.5 23 46973.0 24 52679.0 25 58385.0 26 58385.0 27 65307.0 28 72229.0 29 76382.0 30 80535.0 31 87163.5 32 93792.0 33 93792.0 34 102840.5 35 111889.0 36 121973.5 37 132058.0 38 138618.0 39 145178.0 40 145178.0 41 153560.5 42 161943.0 43 178283.5 44 194624.0 45 231299.0 46 267974.0 47 267974.0 48 272816.5 49 277659.0 50 257269.5 51 236880.0 52 226334.5 53 215789.0 54 215789.0 55 192754.0 56 169719.0 57 147972.5 58 126226.0 59 113787.0 60 101348.0 61 101348.0 62 90335.0 63 79322.0 64 69984.5 65 60647.0 66 51612.0 67 42577.0 68 42577.0 69 35749.0 70 28921.0 71 24662.5 72 20404.0 73 15999.5 74 11595.0 75 11595.0 76 8983.5 77 6372.0 78 5056.0 79 3740.0 80 3018.5 81 2297.0 82 2297.0 83 1721.5 84 1146.0 85 964.5 86 783.0 87 643.0 88 503.0 89 503.0 90 411.5 91 320.0 92 189.5 93 59.0 94 43.0 95 27.0 96 27.0 97 19.0 98 11.0 99 6.5 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2993804.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.59012553830597 #Duplication Level Percentage of deduplicated Percentage of total 1 74.0525657488183 32.27960637424646 2 13.665521564014934 11.913636010436766 3 4.990252912978692 6.525772528339147 4 2.3671324347280187 4.127343999823608 5 1.2646741602590394 2.7563652705371604 6 0.7603020406211035 1.9884996838622464 7 0.5152034320990605 1.5720447598074905 8 0.36039444599991727 1.25677113155557 9 0.25764002066431896 1.0107504760004467 >10 1.5063099485267148 12.465293029871518 >50 0.1468668922118322 4.494345396490545 >100 0.10010824422983959 8.207865015989 >500 0.007203803269046992 2.055560196707326 >1k 0.004828080914336334 3.87691220366133 >5k 6.897258449051906E-4 2.116392191208995 >10k+ 3.0654481995786247E-4 3.3528417314624677 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 30321 1.0127917525663004 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 28901 0.9653604577988405 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 26302 0.8785478274462858 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 14843 0.49579063960098924 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9858 0.32928007311099855 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 8347 0.2788091671999904 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 7542 0.2519202993916769 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 7482 0.24991616017615048 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 7461 0.24921471145071622 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 6136 0.20495663710784007 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 5912 0.1974745173698746 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 5490 0.18337873822067174 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 5126 0.17122029364647787 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 4812 0.16073196508522267 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 4521 0.15101188988991932 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 3902 0.13033585364973793 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3808 0.12719603554541314 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 3708 0.12385580351953569 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 3463 0.11567223505613594 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 3.340232025877445E-5 0.0 11 0.0 0.0 0.0 2.338162418114212E-4 0.0 12 0.0 0.0 0.0 3.3402320258774456E-4 0.0 13 0.0 0.0 0.0 4.676324836228424E-4 0.0 14 0.0 0.0 0.0 5.344371241403912E-4 0.0 15 0.0 0.0 0.0 7.682533659518125E-4 0.0 16 0.0 0.0 0.0 0.0014028974508685271 0.0 17 0.0 0.0 0.0 0.0024383693788905354 0.0 18 0.0 0.0 0.0 0.00277239258147828 0.0 19 0.0 0.0 0.0 0.0033402320258774454 0.0 20 0.0 0.0 0.0 0.0041752900323468066 0.0 21 0.0 0.0 0.0 0.00584540604528553 0.0 22 0.0 0.0 0.0 0.009452856633233172 0.0 23 0.0 0.0 0.0 0.01583269980265909 0.0 24 0.0 0.0 0.0 0.026053809801844074 0.0 25 0.0 0.0 0.0 0.030696732317813724 0.0 26 0.0 0.0 0.0 0.039114117023024884 0.0 27 0.0 0.0 0.0 0.09997314453451195 0.0 28 0.0 0.0 0.0 0.16604293400636783 0.0 29 0.0 0.0 0.0 0.24584107710458 0.0 30 0.0 0.0 0.0 0.3846277177797879 0.0 31 0.0 0.0 0.0 0.6036467317165719 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7055 0.0 28.897238 1 GTATTGG 960 0.0 20.427082 1 ATTGGAC 955 0.0 19.952879 3 TTGGACC 1515 0.0 17.58416 4 ACGGACC 330 0.0 17.378788 8 GTATCAA 11995 0.0 16.996248 2 GGACCCT 1580 0.0 16.977848 6 CGAATTA 215 0.0 16.348837 15 TAAACGT 125 1.6602098E-7 16.279999 4 TGGACCC 1655 0.0 16.096678 5 TCTTACG 70 0.0025937974 15.857142 26 CGAACGA 215 0.0 15.488372 16 ACGTTTA 120 1.9379295E-6 15.416666 26 TATTGGA 1365 0.0 15.043956 2 TCCGATA 255 0.0 14.509804 8 GATAACG 230 1.8189894E-12 14.47826 11 GACCCTC 1755 0.0 14.441595 7 CGTCTGT 720 0.0 14.388887 34 CTAGTAC 335 0.0 14.358209 3 TAACGAA 235 3.6379788E-12 14.170214 13 >>END_MODULE