##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088372_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3975757 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.434122608600074 31.0 31.0 34.0 30.0 34.0 2 31.627541119842082 31.0 31.0 34.0 30.0 34.0 3 31.710213174497333 31.0 31.0 34.0 30.0 34.0 4 35.497141047604266 37.0 35.0 37.0 33.0 37.0 5 35.3294544913082 37.0 35.0 37.0 33.0 37.0 6 35.36082210255808 37.0 35.0 37.0 32.0 37.0 7 35.2422728552072 37.0 35.0 37.0 32.0 37.0 8 35.2731842011471 37.0 35.0 37.0 32.0 37.0 9 36.78259184351559 39.0 37.0 39.0 32.0 39.0 10 36.65661357069861 39.0 35.0 39.0 32.0 39.0 11 36.75685636722768 39.0 35.0 39.0 32.0 39.0 12 36.62114183537877 39.0 35.0 39.0 32.0 39.0 13 36.65985169616755 39.0 35.0 39.0 32.0 39.0 14 37.67590272745542 39.0 37.0 41.0 32.0 41.0 15 37.66868171269019 39.0 36.0 41.0 32.0 41.0 16 37.62690778133573 39.0 36.0 41.0 32.0 41.0 17 37.68503180652137 39.0 37.0 41.0 32.0 41.0 18 37.66464650631314 39.0 37.0 41.0 32.0 41.0 19 37.722276034475954 40.0 37.0 41.0 32.0 41.0 20 37.685314016928096 39.0 37.0 41.0 32.0 41.0 21 37.63257739343727 39.0 37.0 41.0 32.0 41.0 22 37.52773069380246 39.0 36.0 41.0 32.0 41.0 23 37.41672868839821 39.0 36.0 41.0 32.0 41.0 24 37.34223344132954 39.0 36.0 41.0 31.0 41.0 25 37.284567190600434 39.0 36.0 41.0 31.0 41.0 26 37.06154224214407 39.0 36.0 41.0 31.0 41.0 27 36.91151848566198 39.0 35.0 40.0 31.0 41.0 28 36.79023189797566 39.0 35.0 40.0 30.0 41.0 29 36.653023814081195 39.0 35.0 40.0 30.0 41.0 30 36.468469778208274 38.0 35.0 40.0 30.0 41.0 31 36.23907270992669 38.0 35.0 40.0 30.0 41.0 32 36.101971272389136 38.0 35.0 40.0 30.0 41.0 33 36.16798184597298 38.0 35.0 40.0 30.0 41.0 34 36.13880928839464 38.0 35.0 40.0 30.0 41.0 35 36.060462699304814 38.0 35.0 40.0 30.0 41.0 36 35.98059765725119 38.0 35.0 40.0 29.0 41.0 37 35.85561089372414 38.0 35.0 40.0 29.0 41.0 38 35.742303415425035 38.0 35.0 40.0 28.0 41.0 39 35.676005600945935 38.0 35.0 40.0 27.0 41.0 40 35.52668208846768 38.0 34.0 40.0 26.0 41.0 41 35.38534045214534 38.0 34.0 40.0 26.0 41.0 42 35.21244230972869 38.0 34.0 40.0 25.0 41.0 43 34.88566051697828 38.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 2.0 14 8.0 15 19.0 16 50.0 17 94.0 18 251.0 19 545.0 20 1145.0 21 2365.0 22 4430.0 23 7609.0 24 12426.0 25 19864.0 26 30173.0 27 44769.0 28 63402.0 29 85434.0 30 110729.0 31 136673.0 32 167110.0 33 205044.0 34 253193.0 35 310230.0 36 395671.0 37 544687.0 38 724136.0 39 855698.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.58813026047618 21.95871125926459 13.44493639827585 23.00822208198338 2 18.172388302403792 22.733859237372908 35.88808370330481 23.20566875691849 3 19.783729236972984 25.98591915954622 31.750330817502174 22.48002078597862 4 12.960525504954152 15.81427134505454 35.72773688130336 35.49746626868795 5 12.057854642524681 39.75932130660903 34.37981747878454 13.803006572081744 6 31.63530869718647 36.38172554308525 15.763287343768747 16.219678415959528 7 25.600634042774743 34.2342854455139 21.64352600020575 18.52155451150561 8 27.817972778517397 33.0584339032793 20.209509786438154 18.914083531765147 9 25.911065490169545 13.65674511797376 22.828507879128427 37.603681512728265 10 16.584011547989476 26.997273726739333 33.577731234579986 22.840983490691208 11 32.48998869900751 21.92759768768564 24.534522607895802 21.047891005411046 12 20.825493107350372 26.911327830146558 31.204522811630593 21.058656250872478 13 30.86853648248623 20.55203575067591 28.055864581260874 20.523563185576986 14 21.37371574771798 22.13568384586885 27.89868696703546 28.59191343937771 15 23.553325819460294 28.705929461986734 25.95601290521528 21.784731813337686 16 22.595495650262325 27.819884364160085 26.538543477380532 23.046076508197054 17 20.528568521667697 26.724470333574207 27.298222703248715 25.448738441509377 18 21.426083133350453 25.81868056825404 31.194788816318503 21.560447482077 19 20.824034265675696 24.67117582890504 32.22548561192246 22.27930429349681 20 24.464473055068506 23.822507260881387 31.012433606983524 20.700586077066582 21 24.075339614569 24.774904502463304 30.05450282801489 21.095253054952806 22 22.74615878183702 24.28161479688019 30.958657684561707 22.01356873672108 23 21.778921599081634 25.64817215941518 31.826140279700194 20.746765961803 24 20.62814704218593 25.305771957390753 30.448390080178438 23.617690920244875 25 21.791397210644416 25.826779654792787 31.30840239984486 21.073420734717942 26 22.864475872142084 25.2627361279877 30.171486838858613 21.701301161011603 27 21.785536691503026 26.330432166754658 29.84440447441833 22.039626667323983 28 21.45259380792136 25.82089398320873 30.149428146639746 22.577084062230163 29 20.638962592532692 25.90787112995085 30.895424443697138 22.55774183381932 30 20.17603188524852 26.283070117212898 32.27033241719753 21.270565580341053 31 21.421002339931743 25.725591377943875 31.323644780100995 21.52976150202339 32 22.243487215139155 25.66909899171403 29.669091949030086 22.418321844116733 33 22.824885927384393 25.641632524321782 29.459899083369535 22.07358246492429 34 21.712267626014366 27.86266866913647 29.385523310403528 21.039540394445634 35 20.649576923338124 28.669659639661077 29.77249364083368 20.90826979616712 36 21.23316389809538 26.025861238501246 31.124160757309866 21.616814106093507 37 21.48164487920162 26.0318978247413 30.4623999907439 22.02405730531318 38 21.425580084497117 25.65727734366059 31.087060904376195 21.830081667466096 39 22.381750192479068 25.230314629390076 30.92123084987337 21.466704328257485 40 20.89247406217231 25.8246416971661 30.41991751507952 22.86296672558207 41 21.464013016892128 25.50842518795792 30.45963322205054 22.56792857309941 42 19.789941890311706 26.904737890167834 30.755853539338545 22.54946668018191 43 20.10950367439459 26.46587807051588 30.454250599319828 22.970367655769707 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 298.0 1 479.0 2 660.0 3 1820.5 4 2981.0 5 2981.0 6 4964.0 7 6947.0 8 7339.0 9 7731.0 10 11547.0 11 15363.0 12 15363.0 13 27264.0 14 39165.0 15 63891.0 16 88617.0 17 86697.0 18 84777.0 19 84777.0 20 89828.0 21 94879.0 22 77206.5 23 59534.0 24 65860.5 25 72187.0 26 72187.0 27 78942.0 28 85697.0 29 91727.5 30 97758.0 31 105642.5 32 113527.0 33 113527.0 34 125794.0 35 138061.0 36 152295.0 37 166529.0 38 177552.5 39 188576.0 40 188576.0 41 200686.5 42 212797.0 43 238718.5 44 264640.0 45 319722.5 46 374805.0 47 374805.0 48 379897.5 49 384990.0 50 355839.0 51 326688.0 52 310977.5 53 295267.0 54 295267.0 55 261064.5 56 226862.0 57 194671.0 58 162480.0 59 145634.0 60 128788.0 61 128788.0 62 115015.5 63 101243.0 64 89174.0 65 77105.0 66 66225.5 67 55346.0 68 55346.0 69 46998.5 70 38651.0 71 32933.0 72 27215.0 73 21092.0 74 14969.0 75 14969.0 76 11565.5 77 8162.0 78 6557.0 79 4952.0 80 4010.5 81 3069.0 82 3069.0 83 2365.5 84 1662.0 85 1390.5 86 1119.0 87 998.0 88 877.0 89 877.0 90 733.5 91 590.0 92 360.5 93 131.0 94 88.5 95 46.0 96 46.0 97 29.5 98 13.0 99 8.0 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3975757.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.550980841249704 #Duplication Level Percentage of deduplicated Percentage of total 1 71.67189963526192 26.913501300596927 2 13.956940091684892 10.481935799706585 3 5.543172793014316 6.244547260506516 4 2.6933098809513134 4.045457109566052 5 1.5260746427599794 2.8652799836298493 6 0.9325368595568371 2.101060424818677 7 0.6309379404064587 1.6584636958554337 8 0.4372596450304993 1.313562284255354 9 0.33312999081632555 1.1258422112510578 >10 1.9169450525757141 13.773607892164632 >50 0.2030520895065467 5.292503403727476 >100 0.1367379831341445 9.871985792665814 >500 0.010440630734982644 2.70958394327741 >1k 0.006358076405066374 4.718719764022385 >5k 6.023440804799724E-4 1.6206737435889174 >10k+ 6.023440804799724E-4 5.263275390366992 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 44079 1.108694520313993 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 43121 1.0845984802391093 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 39354 0.9898492287129218 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 22363 0.5624840753597365 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14594 0.3670747482806419 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 12935 0.3253468458962658 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 11139 0.28017305886652527 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 10927 0.2748407410211439 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 10915 0.2745389117091412 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 8964 0.2254664960660322 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 8802 0.22139180035399547 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 8135 0.2046151210951776 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 7576 0.1905549056443842 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 7553 0.18997639946304568 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 6806 0.17118752479087632 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 5676 0.14276526457728678 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 5499 0.13831328222524666 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5476 0.13773477604390813 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 4796 0.12063111503042062 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 4306 0.10830641812364288 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 4295 0.10802974125430705 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 4288 0.10785367415563879 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 4067 0.10229498432625535 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 2.5152442666893374E-5 0.0 0.0 0.0 0.0 6 7.545732800068012E-5 0.0 0.0 0.0 0.0 7 7.545732800068012E-5 0.0 0.0 0.0 0.0 8 1.006097706675735E-4 0.0 0.0 0.0 0.0 9 1.006097706675735E-4 0.0 0.0 2.5152442666893374E-5 0.0 10 1.006097706675735E-4 2.5152442666893374E-5 0.0 2.5152442666893374E-5 0.0 11 1.006097706675735E-4 2.5152442666893374E-5 0.0 1.2576221333446687E-4 0.0 12 1.006097706675735E-4 2.5152442666893374E-5 0.0 3.0182931200272047E-4 0.0 13 1.006097706675735E-4 2.5152442666893374E-5 0.0 3.5213419733650726E-4 0.0 14 1.006097706675735E-4 2.5152442666893374E-5 0.0 4.527439680040807E-4 0.0 15 1.006097706675735E-4 2.5152442666893374E-5 0.0 8.803354933412681E-4 0.0 16 1.006097706675735E-4 2.5152442666893374E-5 0.0 0.0014839941173467092 0.0 17 1.006097706675735E-4 2.5152442666893374E-5 0.0 0.0019367380853507897 0.0 18 1.006097706675735E-4 2.5152442666893374E-5 0.0 0.00216311006935283 0.0 19 1.006097706675735E-4 2.5152442666893374E-5 0.0 0.002565549152023124 0.0 20 1.006097706675735E-4 2.5152442666893374E-5 0.0 0.003370427317363712 0.0 21 1.006097706675735E-4 2.5152442666893374E-5 0.0 0.004502287237373914 0.0 22 1.006097706675735E-4 2.5152442666893374E-5 0.0 0.007696647456069372 0.0 23 1.006097706675735E-4 2.5152442666893374E-5 0.0 0.013506861712121742 0.0 24 1.006097706675735E-4 5.030488533378675E-5 0.0 0.021807167792196554 0.0 25 1.006097706675735E-4 5.030488533378675E-5 0.0 0.02676219899757455 0.0 26 1.006097706675735E-4 5.030488533378675E-5 0.0 0.03463491355231218 0.0 27 1.006097706675735E-4 5.030488533378675E-5 0.0 0.09474925152618734 0.0 28 1.006097706675735E-4 5.030488533378675E-5 0.0 0.15702669956941534 0.0 29 1.006097706675735E-4 5.030488533378675E-5 0.0 0.23167914940475487 0.0 30 1.006097706675735E-4 5.030488533378675E-5 0.0 0.36868450461132307 0.0 31 1.006097706675735E-4 5.030488533378675E-5 0.0 0.5704825521278086 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10470 0.0 28.059217 1 GTATTGG 1365 0.0 20.871796 1 ATTGGAC 1320 0.0 19.901516 3 CGAACGA 280 0.0 18.5 16 GGACCCT 2220 0.0 18.250002 6 TGGACCC 2240 0.0 18.087053 5 TTGGACC 2415 0.0 17.389235 4 TATACCG 245 0.0 16.612244 5 GTATCAA 18220 0.0 16.12404 2 GACCCTC 2460 0.0 16.093496 7 ACGAACG 335 0.0 16.014925 15 TATTGGA 1900 0.0 15.676315 2 CGTCTGT 875 0.0 15.434286 34 CTGTGCG 350 0.0 15.328572 9 CGGTATA 295 0.0 14.423728 26 CGTATAC 220 1.8189894E-11 14.295454 3 ACGTTTA 220 1.8189894E-11 14.295454 26 ACCCTCG 2735 0.0 14.272395 8 TAATACT 625 0.0 14.208 4 CCGTATA 225 2.7284841E-11 13.9777775 2 >>END_MODULE