##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088371_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3370434 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.3140085223446 31.0 31.0 34.0 30.0 34.0 2 31.513387890105548 31.0 31.0 34.0 30.0 34.0 3 31.597666947342688 31.0 31.0 34.0 30.0 34.0 4 35.39671923556432 37.0 35.0 37.0 33.0 37.0 5 35.216116974846564 37.0 35.0 37.0 33.0 37.0 6 35.247889144246706 37.0 35.0 37.0 32.0 37.0 7 35.13248175160825 37.0 35.0 37.0 32.0 37.0 8 35.16750839802827 37.0 35.0 37.0 32.0 37.0 9 36.6591465668813 39.0 35.0 39.0 32.0 39.0 10 36.51494851998289 38.0 35.0 39.0 32.0 39.0 11 36.6227328587357 39.0 35.0 39.0 32.0 39.0 12 36.490118186559954 38.0 35.0 39.0 32.0 39.0 13 36.534096499145214 38.0 35.0 39.0 32.0 39.0 14 37.5341039165876 39.0 36.0 41.0 32.0 41.0 15 37.52319226544712 39.0 36.0 41.0 32.0 41.0 16 37.479677988057325 39.0 36.0 41.0 32.0 41.0 17 37.53481984812638 39.0 36.0 41.0 32.0 41.0 18 37.505247692136976 39.0 36.0 41.0 32.0 41.0 19 37.57168513016425 39.0 36.0 41.0 32.0 41.0 20 37.53908636098497 39.0 36.0 41.0 32.0 41.0 21 37.489226906683236 39.0 36.0 41.0 32.0 41.0 22 37.37940514485672 39.0 36.0 41.0 31.0 41.0 23 37.2789934471347 39.0 36.0 41.0 31.0 41.0 24 37.206697713113506 39.0 36.0 41.0 31.0 41.0 25 37.14331537125486 39.0 36.0 41.0 31.0 41.0 26 36.91659056370782 39.0 36.0 40.0 31.0 41.0 27 36.75630200739727 39.0 35.0 40.0 30.0 41.0 28 36.641818234684315 39.0 35.0 40.0 30.0 41.0 29 36.49426750382889 38.0 35.0 40.0 30.0 41.0 30 36.31544898965534 38.0 35.0 40.0 30.0 41.0 31 36.07884622573829 38.0 35.0 40.0 30.0 41.0 32 35.947246259680504 38.0 35.0 40.0 29.0 41.0 33 36.018503255070414 38.0 35.0 40.0 30.0 41.0 34 35.99460277222459 38.0 35.0 40.0 30.0 41.0 35 35.92564607406643 38.0 35.0 40.0 29.0 41.0 36 35.84479268841935 38.0 35.0 40.0 29.0 41.0 37 35.723612152025524 38.0 35.0 40.0 28.0 41.0 38 35.60773508693539 38.0 34.0 40.0 27.0 41.0 39 35.5439507196996 38.0 34.0 40.0 27.0 41.0 40 35.4014984420404 38.0 34.0 40.0 26.0 41.0 41 35.26575924643532 38.0 34.0 40.0 25.0 41.0 42 35.11508369545287 38.0 34.0 40.0 25.0 41.0 43 34.774700528181235 38.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 4.0 13 3.0 14 3.0 15 21.0 16 34.0 17 82.0 18 197.0 19 501.0 20 1078.0 21 2238.0 22 4029.0 23 7067.0 24 11445.0 25 18457.0 26 28071.0 27 40525.0 28 56637.0 29 76949.0 30 99145.0 31 121260.0 32 148984.0 33 180903.0 34 221343.0 35 269763.0 36 339788.0 37 459281.0 38 612693.0 39 669933.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.845748648393645 22.45268710201713 13.764696178593026 22.936868070996198 2 18.102624172435952 23.37420047388556 35.45133950108502 23.071835852593463 3 19.82756523343878 26.010359496729503 32.05607942478624 22.105995845045477 4 13.392755947750349 16.311638204456756 35.86324491148618 34.432360936306715 5 12.092804665511919 39.871927472841776 34.4393926716856 13.595875189960699 6 31.41708159839356 36.944797020205705 15.723909739813923 15.914211641586812 7 25.03348233491592 34.70639092769655 21.998680288651254 18.261446448736276 8 27.41623185619419 33.54449308308663 20.509139179108686 18.530135881610498 9 25.750689673792753 13.72947816215953 23.007600801558496 37.512231362489224 10 16.2111466950547 27.64261219771697 34.04715831848361 22.099082788744713 11 32.24664835448491 22.28965171844338 24.613447407663227 20.85025251940848 12 20.34565874899197 27.26135565924151 31.688916026838086 20.704069564928435 13 30.419435597908162 21.050464124204776 28.16548254616468 20.364617731722383 14 21.057288171196944 22.402545191509464 28.36376561594145 28.17640102135215 15 23.181109613776744 29.10310660288853 26.168469698561076 21.547314084773653 16 22.137950186830537 28.28428030336746 26.803284087449864 22.774485422352136 17 20.171971918156533 27.239578048405637 27.974171872227732 24.6142781612101 18 20.986169733630746 26.466977249814118 31.3996951134483 21.147157903106837 19 20.56907211356164 25.38720532726646 32.45098405724604 21.592738501925865 20 23.829275398954554 24.593806020233597 31.284843435593164 20.29207514521869 21 23.45122319558846 25.349732408348597 30.427921151994074 20.771123244068864 22 22.273363014970773 25.11780381992349 31.101662278507753 21.507170886597986 23 21.434746979172413 26.37066917791596 31.769083744111292 20.425500098800335 24 20.384021760995765 25.94431458975313 30.738533969215837 22.93312968003527 25 21.40510687941078 26.4886658513414 31.37610764667102 20.730119622576794 26 22.297899914373044 25.917967834409456 30.34487546707635 21.439256784141154 27 21.308116402813408 26.97391493202359 30.19887053121349 21.519098133949516 28 21.129356041388142 26.619865572208205 30.265360484732827 21.98541790167082 29 20.3306458456092 26.466354184653962 31.178685000210653 22.02431496952618 30 20.056971891453742 26.875292618102005 32.22395098079357 20.843784509650686 31 21.06384519026333 26.40149606845884 31.473483830272304 21.061174911005526 32 21.753815680710556 26.448047936853236 30.088855025791933 21.70928135664428 33 22.329320200306547 26.44012610838842 29.795717702824025 21.43483598848101 34 21.2944979785986 28.182305305488846 29.784947576484218 20.738249139428337 35 20.32708547326546 28.790624590186308 30.11075131570593 20.7715386208423 36 20.849095398396763 26.46190371922429 31.347891695846887 21.341109186532062 37 21.083071200919527 26.2871191069162 30.86762713644593 21.762182555718343 38 21.013228563443164 26.079312041119927 31.38797555448349 21.51948384095342 39 21.747466350030887 25.588366364687754 31.423786966307603 21.24038031897376 40 20.452291900686976 25.999144323846725 30.988353428668237 22.56021034679807 41 20.954719777927707 25.716065052749883 30.972836139203437 22.35637903011897 42 19.31887703482697 26.94863628838304 31.24852763768702 22.483959039102977 43 19.532796073146663 26.6642218776573 31.049087446898533 22.753894602297507 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 355.0 1 492.0 2 629.0 3 1644.0 4 2659.0 5 2659.0 6 4464.5 7 6270.0 8 6526.5 9 6783.0 10 10232.5 11 13682.0 12 13682.0 13 24041.5 14 34401.0 15 55380.5 16 76360.0 17 74510.0 18 72660.0 19 72660.0 20 79227.0 21 85794.0 22 72132.0 23 58470.0 24 64764.5 25 71059.0 26 71059.0 27 77901.5 28 84744.0 29 89171.0 30 93598.0 31 100222.0 32 106846.0 33 106846.0 34 117352.0 35 127858.0 36 139862.5 37 151867.0 38 159674.0 39 167481.0 40 167481.0 41 176610.5 42 185740.0 43 205188.0 44 224636.0 45 265500.5 46 306365.0 47 306365.0 48 309537.0 49 312709.0 50 287484.0 51 262259.0 52 247992.5 53 233726.0 54 233726.0 55 208276.5 56 182827.0 57 159837.5 58 136848.0 59 121331.0 60 105814.0 61 105814.0 62 93867.5 63 81921.0 64 71468.5 65 61016.0 66 51838.5 67 42661.0 68 42661.0 69 35617.0 70 28573.0 71 23993.0 72 19413.0 73 15122.0 74 10831.0 75 10831.0 76 8234.0 77 5637.0 78 4471.5 79 3306.0 80 2683.5 81 2061.0 82 2061.0 83 1551.0 84 1041.0 85 865.0 86 689.0 87 564.0 88 439.0 89 439.0 90 375.0 91 311.0 92 180.0 93 49.0 94 40.5 95 32.0 96 32.0 97 20.5 98 9.0 99 7.0 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3370434.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.35328587021779 #Duplication Level Percentage of deduplicated Percentage of total 1 71.96044554572786 29.038404304549974 2 13.812006604859636 11.147197019344745 3 5.566363376795891 6.738631578040663 4 2.718792458820463 4.388488372502979 5 1.5490451858393266 3.12545316050295 6 0.933510479610144 2.260212914793135 7 0.6322995002074241 1.7860753741226212 8 0.4458094107003918 1.4391899674900992 9 0.32025532640732657 1.1631019264177285 >10 1.772801007254672 13.207508779975615 >50 0.1571379437221921 4.419576375963347 >100 0.11725933416660712 9.149097881219689 >500 0.008019830009304191 2.2380701873216005 >1k 0.005223925969155231 4.115816418650576 >5k 6.621877989070012E-4 1.8676217695520054 >10k+ 3.678821105038895E-4 3.915553969552309 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 36416 1.0804543272468767 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 36068 1.0701292474500317 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 31563 0.9364669357121368 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 15280 0.45335407843618947 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12552 0.3724149471551735 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 8822 0.2617467068039309 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 8319 0.2468228127297553 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 7887 0.23400547229229232 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 7811 0.23175056980792386 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 6819 0.20231815843300893 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 6284 0.18644483173383605 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 5936 0.1761197519369909 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 5934 0.17606041239792858 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 5091 0.15104879668315713 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 4794 0.14223687513240135 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4704 0.13956659587459655 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 4476 0.13280188842149113 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 4324 0.12829208345275417 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 3736 0.11084625896842959 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 8.90093085934927E-5 0.0 0.0 0.0 0.0 7 8.90093085934927E-5 0.0 0.0 0.0 0.0 8 8.90093085934927E-5 0.0 0.0 2.9669769531164234E-5 0.0 9 8.90093085934927E-5 0.0 0.0 2.9669769531164234E-5 0.0 10 8.90093085934927E-5 0.0 0.0 2.9669769531164234E-5 0.0 11 8.90093085934927E-5 0.0 0.0 1.1867907812465694E-4 0.0 12 8.90093085934927E-5 0.0 0.0 2.0768838671814964E-4 0.0 13 1.1867907812465694E-4 0.0 0.0 3.560372343739708E-4 0.0 14 1.1867907812465694E-4 0.0 0.0 4.450465429674635E-4 0.0 15 1.1867907812465694E-4 0.0 0.0 9.494326249972555E-4 0.0 16 1.1867907812465694E-4 0.0 0.0 0.001394479167964719 0.0 17 1.1867907812465694E-4 0.0 0.0 0.0021955629453061535 0.0 18 1.1867907812465694E-4 0.0 0.0 0.002373581562493139 0.0 19 1.1867907812465694E-4 0.0 0.0 0.002877967644522931 0.0 20 1.1867907812465694E-4 0.0 0.0 0.003768060730457858 0.0 21 1.1867907812465694E-4 0.0 0.0 0.004954851511704428 0.0 22 1.1867907812465694E-4 0.0 0.0 0.00792182846482085 0.0 23 1.1867907812465694E-4 0.0 0.0 0.012579982281213636 0.0 24 1.1867907812465694E-4 0.0 0.0 0.02121388521478243 0.0 25 1.1867907812465694E-4 0.0 0.0 0.0264654344217985 0.0 26 1.1867907812465694E-4 0.0 0.0 0.035485044359272425 0.0 27 1.1867907812465694E-4 0.0 0.0 0.09954207677705601 0.0 28 1.1867907812465694E-4 0.0 0.0 0.16665509545654952 0.0 29 1.1867907812465694E-4 0.0 0.0 0.2434107892336714 0.0 30 1.1867907812465694E-4 0.0 0.0 0.3817609245574902 0.0 31 1.1867907812465694E-4 0.0 0.0 0.6012875493185744 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8370 0.0 28.291517 1 GTATTGG 795 0.0 19.54717 1 ATTGGAC 765 0.0 19.346405 3 CGAACGA 160 1.8189894E-12 18.5 16 ATAACGC 250 0.0 18.5 3 GTATCAA 14250 0.0 16.656492 2 TCTATAC 305 0.0 15.770493 3 TTGGACC 1510 0.0 15.68212 4 GGACCCT 1520 0.0 15.335526 6 GACCCTC 1490 0.0 14.651007 7 TGGACCC 1575 0.0 14.56508 5 TCTAACG 140 6.004284E-7 14.535715 2 ACACGCT 485 0.0 14.494845 9 CGCACTA 115 2.2122393E-5 14.478261 29 CGCATCG 205 9.276846E-11 14.439024 13 CCGTACG 90 8.2798646E-4 14.388888 2 ACGTTTA 245 0.0 14.346938 26 AATGCGT 350 0.0 14.271429 35 AGCCGTC 240 5.456968E-12 13.875001 12 TCTATCG 80 0.006301952 13.875 29 >>END_MODULE