##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088370_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3495136 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.415045079790886 31.0 31.0 34.0 30.0 34.0 2 31.61247115992053 31.0 31.0 34.0 30.0 34.0 3 31.690068998745687 31.0 31.0 34.0 30.0 34.0 4 35.47890468353735 37.0 35.0 37.0 33.0 37.0 5 35.30423050776851 37.0 35.0 37.0 33.0 37.0 6 35.33818598189026 37.0 35.0 37.0 32.0 37.0 7 35.22097738113767 37.0 35.0 37.0 32.0 37.0 8 35.25474230473435 37.0 35.0 37.0 32.0 37.0 9 36.7534951429644 39.0 37.0 39.0 32.0 39.0 10 36.62678648270053 39.0 35.0 39.0 32.0 39.0 11 36.73514421184183 39.0 35.0 39.0 32.0 39.0 12 36.60721185098377 39.0 35.0 39.0 32.0 39.0 13 36.6497901655329 39.0 35.0 39.0 32.0 39.0 14 37.66241199197971 39.0 37.0 41.0 32.0 41.0 15 37.65382405720407 39.0 36.0 41.0 32.0 41.0 16 37.60284235005447 39.0 36.0 41.0 32.0 41.0 17 37.668635211905915 39.0 36.0 41.0 32.0 41.0 18 37.65688488230501 39.0 37.0 41.0 32.0 41.0 19 37.720208312351794 40.0 37.0 41.0 32.0 41.0 20 37.68649803612792 39.0 37.0 41.0 32.0 41.0 21 37.63838860633749 39.0 37.0 41.0 32.0 41.0 22 37.53416290524889 39.0 36.0 41.0 32.0 41.0 23 37.44433063548886 39.0 36.0 41.0 32.0 41.0 24 37.3768010744074 39.0 36.0 41.0 31.0 41.0 25 37.31588727877828 39.0 36.0 41.0 31.0 41.0 26 37.099017892293745 39.0 36.0 41.0 31.0 41.0 27 36.93887076211055 39.0 35.0 40.0 31.0 41.0 28 36.82713176254086 39.0 35.0 40.0 30.0 41.0 29 36.684846884355856 39.0 35.0 40.0 30.0 41.0 30 36.50532282577846 38.0 35.0 40.0 30.0 41.0 31 36.26923501689205 38.0 35.0 40.0 30.0 41.0 32 36.133354181353745 38.0 35.0 40.0 30.0 41.0 33 36.19274042555139 38.0 35.0 40.0 30.0 41.0 34 36.16389405161917 38.0 35.0 40.0 30.0 41.0 35 36.08800258416267 38.0 35.0 40.0 30.0 41.0 36 36.00511768354651 38.0 35.0 40.0 29.0 41.0 37 35.87623457284638 38.0 35.0 40.0 29.0 41.0 38 35.75836390915833 38.0 35.0 40.0 28.0 41.0 39 35.6932602908728 38.0 35.0 40.0 27.0 41.0 40 35.53813499674977 38.0 35.0 40.0 26.0 41.0 41 35.40678274035688 38.0 34.0 40.0 26.0 41.0 42 35.23779789970977 38.0 34.0 40.0 25.0 41.0 43 34.89882396564826 38.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 2.0 14 4.0 15 13.0 16 29.0 17 64.0 18 202.0 19 444.0 20 977.0 21 2016.0 22 3778.0 23 6440.0 24 10809.0 25 17285.0 26 26899.0 27 39022.0 28 55018.0 29 75710.0 30 97503.0 31 119977.0 32 148820.0 33 181078.0 34 223092.0 35 273464.0 36 346850.0 37 473382.0 38 624266.0 39 767990.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.893001016269466 22.51446009540115 13.766502934363642 22.82603595396574 2 17.69550598317204 23.183675828351173 36.150352947639234 22.970465240837555 3 19.434150774104356 26.173974346062646 32.43556187799273 21.95631300184027 4 12.880471603966198 16.25092700255441 36.24268125761058 34.62592013586882 5 11.709243932138836 40.08195961473316 34.74837602885839 13.460420424269614 6 30.937022193127824 37.09972945258782 15.893201294599123 16.07004705968523 7 24.746476245845656 34.9731169259222 22.121342345476684 18.159064482755465 8 27.361682063301686 33.59651813262774 20.577596980489457 18.464202823581115 9 25.59866053853126 13.815027512520256 23.41811591880831 37.16819603014017 10 16.16938511119453 27.87001707515816 34.10957399082611 21.8510238228212 11 31.776417283905406 22.413634262014412 24.92933036082144 20.880618093258747 12 20.240585774058577 27.671169304999864 31.6939598344671 20.39428508647446 13 30.384625948747058 21.292418950221105 28.454944242513026 19.86801085851881 14 20.916296247127438 22.62484206623147 28.64847033134047 27.810391355300624 15 22.977331926425755 29.32947387455023 26.42643948618881 21.26675471283521 16 21.873798330022066 28.438664475430997 27.2181683345083 22.469368860038635 17 19.736885774974137 27.540130055025042 28.098362982155773 24.62462118784505 18 20.64320243904672 26.714039167574594 31.875125889235782 20.7676325041429 19 20.129746024189043 25.52564478177673 33.08995701454822 21.254652179486005 20 23.67904997115992 24.69929639361673 31.777762009833094 19.843891625390256 21 23.1246509434826 25.486447451544088 30.912559625719858 20.476341979253455 22 21.913882607143183 25.230606191003723 31.688437874806592 21.167073327046502 23 21.206098990139438 26.54008313267352 32.392273147597116 19.861544729589923 24 19.860600560321544 26.051947620922334 31.214751013980575 22.87270080477555 25 21.02327348635361 26.64806176354797 32.08341535207786 20.24524939802056 26 21.908360647482674 26.08264742773958 30.896823471246897 21.11216845353085 27 20.83303768437051 27.226951969823205 30.602042381183452 21.337967964622838 28 20.68806478488963 26.82808337071862 30.77213590544116 21.711715938950586 29 19.76818641678035 26.71049138002069 31.74242719024381 21.778895012955147 30 19.499184008862603 27.12924475614111 32.953023859443526 20.418547375552766 31 20.709122620693442 26.55230011078253 31.980014511595545 20.758562756928487 32 21.52153735934739 26.692752442251173 30.459272543328787 21.32643765507265 33 22.056022998818932 26.6902346575355 30.12280494950697 21.130937394138595 34 20.911518178405647 28.654450070040195 30.135250817135585 20.298780934418577 35 19.809071807220093 29.352076714611393 30.469858683610596 20.368992794557922 36 20.528814901623285 26.714067778764544 31.818304065993424 20.938813253618743 37 20.676105307490182 26.680764353661772 31.289225941422593 21.35390439742545 38 20.65933915017899 26.444807870137243 31.8172740631552 21.07857891652857 39 21.49864840738672 26.013236680918855 31.73925134815927 20.748863563535153 40 20.08093533413292 26.453190948792837 31.237067742142223 22.22880597493202 41 20.79366868699816 25.99629885646796 31.247339159334576 21.962693297199305 42 18.8203549160891 27.44511229319832 31.538858573743628 22.195674216968953 43 19.21352988839347 27.02621586112815 31.333544674656437 22.426709575821942 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 330.0 1 457.5 2 585.0 3 1648.0 4 2711.0 5 2711.0 6 4488.5 7 6266.0 8 6749.5 9 7233.0 10 10621.0 11 14009.0 12 14009.0 13 25001.0 14 35993.0 15 59347.0 16 82701.0 17 81178.5 18 79656.0 19 79656.0 20 87173.0 21 94690.0 22 79096.0 23 63502.0 24 70545.5 25 77589.0 26 77589.0 27 84029.5 28 90470.0 29 96332.5 30 102195.0 31 111081.5 32 119968.0 33 119968.0 34 130324.5 35 140681.0 36 153630.0 37 166579.0 38 172292.0 39 178005.0 40 178005.0 41 187068.5 42 196132.0 43 214847.0 44 233562.0 45 278682.0 46 323802.0 47 323802.0 48 325890.0 49 327978.0 50 298818.0 51 269658.0 52 253693.0 53 237728.0 54 237728.0 55 210870.0 56 184012.0 57 155789.5 58 127567.0 59 112036.5 60 96506.0 61 96506.0 62 85854.5 63 75203.0 64 65184.5 65 55166.0 66 46594.5 67 38023.0 68 38023.0 69 31997.5 70 25972.0 71 21775.0 72 17578.0 73 13838.5 74 10099.0 75 10099.0 76 7767.0 77 5435.0 78 4337.0 79 3239.0 80 2618.5 81 1998.0 82 1998.0 83 1490.5 84 983.0 85 807.0 86 631.0 87 496.5 88 362.0 89 362.0 90 306.0 91 250.0 92 157.5 93 65.0 94 40.0 95 15.0 96 15.0 97 11.5 98 8.0 99 4.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3495136.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.79703956913044 #Duplication Level Percentage of deduplicated Percentage of total 1 70.74541211744744 27.44712553255048 2 14.39463987321491 11.169388254890034 3 5.876873019172414 6.840158252027615 4 2.8441937011823257 4.41385182268169 5 1.5862241923521117 3.0770401378098424 6 0.975338113761675 2.270413883573565 7 0.6507831490088647 1.7673921708114164 8 0.4481249696141819 1.3908737742429436 9 0.3429488268282422 1.1974859284177959 >10 1.8254230071267457 13.236125455269509 >50 0.17553200247522233 4.740017528806632 >100 0.11768882062452711 8.705485657659075 >500 0.009441800528841719 2.4580808005614583 >1k 0.00604865346319039 4.404295149907085 >5k 8.851687994912765E-4 2.3837591424937985 >10k+ 4.425843997456383E-4 4.4985065082970195 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 40896 1.1700832242293289 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 39569 1.1321161751645716 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 35428 1.0136372375781657 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 17911 0.5124550232093973 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13172 0.3768665940323925 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 10214 0.29223469415782394 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 9854 0.28193466577552345 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 9216 0.263680726586891 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 8133 0.23269480787013724 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 7857 0.2247981194437069 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 7301 0.20889029783104293 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 7052 0.20176611153328508 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 6822 0.19518553784459317 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 5834 0.16691768217316866 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 5687 0.16271183725039598 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 5213 0.1491501332137004 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 5196 0.14866374298453622 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5130 0.14677540444778114 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 4373 0.12511673365499942 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 3885 0.11115447295899215 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 3695 0.1057183468683336 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3505 0.10028222077767503 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3501 0.10016777601787169 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 2.8611189950834532E-5 0.0 6 0.0 0.0 0.0 2.8611189950834532E-5 0.0 7 0.0 0.0 0.0 2.8611189950834532E-5 0.0 8 0.0 0.0 0.0 2.8611189950834532E-5 0.0 9 0.0 0.0 0.0 2.8611189950834532E-5 0.0 10 0.0 0.0 0.0 5.7222379901669065E-5 0.0 11 0.0 0.0 0.0 2.8611189950834533E-4 0.0 12 0.0 0.0 0.0 4.005566593116834E-4 0.0 13 0.0 0.0 0.0 5.150014191150215E-4 0.0 14 0.0 0.0 0.0 5.722237990166907E-4 0.0 15 0.0 0.0 0.0 8.297245085742014E-4 0.0 16 0.0 0.0 0.0 0.001344725927689223 0.0 17 0.0 0.0 0.0 0.0017166713970500718 0.0 18 0.0 0.0 0.0 0.0019455609166567482 0.0 19 0.0 0.0 0.0 0.002260284006115928 0.0 20 0.0 0.0 0.0 0.0027180630453292804 0.0 21 0.0 0.0 0.0 0.003605009933805151 0.0 22 0.0 0.0 0.0 0.0056364044203144024 0.0 23 0.0 0.0 0.0 0.009899471722988747 0.0 24 0.0 0.0 0.0 0.016623101361434862 0.0 25 0.0 0.0 0.0 0.021572837222929235 0.0 26 0.0 0.0 0.0 0.030385083727786272 0.0 27 0.0 0.0 0.0 0.0938733142286881 0.0 28 0.0 0.0 0.0 0.15773349019895078 0.0 29 0.0 0.0 0.0 0.2340681449877773 0.0 30 0.0 0.0 0.0 0.36791129157778124 0.0 31 0.0 0.0 0.0 0.5752851963414299 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8830 0.0 29.457531 1 GTATTGG 870 0.0 22.114943 1 ATTGGAC 835 0.0 20.60479 3 ACGTTTA 195 0.0 17.076923 26 TTGGACC 1585 0.0 16.92429 4 GGACCCT 1545 0.0 16.883497 6 ACGGACC 220 0.0 16.818182 8 GTATCAA 15595 0.0 16.631613 2 TATACTG 485 0.0 15.639175 5 TGGACCC 1675 0.0 15.241791 5 TATACCG 280 0.0 15.196428 5 CGACGAG 245 0.0 15.102041 24 TATTGGA 1265 0.0 15.063241 2 ACCGTCC 75 0.004106635 14.8 8 GACCCTC 1720 0.0 14.520349 7 TTCGCAC 210 1.364242E-10 14.095238 31 AGTGCGC 200 9.858923E-10 13.874999 8 TGTACCG 120 3.30415E-5 13.874999 5 CGTCTGT 835 0.0 13.51497 34 ATCTGCG 450 0.0 13.155556 36 >>END_MODULE