##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088363_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3314462 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.311805656543957 31.0 31.0 34.0 30.0 34.0 2 31.503406586046243 31.0 31.0 34.0 30.0 34.0 3 31.57926505116064 31.0 31.0 34.0 30.0 34.0 4 35.38472065753054 37.0 35.0 37.0 33.0 37.0 5 35.219207823170095 37.0 35.0 37.0 33.0 37.0 6 35.25301693004777 37.0 35.0 37.0 32.0 37.0 7 35.121420912353194 37.0 35.0 37.0 32.0 37.0 8 35.16571347024042 37.0 35.0 37.0 32.0 37.0 9 36.62871410201716 39.0 35.0 39.0 32.0 39.0 10 36.50264115262145 38.0 35.0 39.0 32.0 39.0 11 36.61608158428125 39.0 35.0 39.0 32.0 39.0 12 36.48083942431683 38.0 35.0 39.0 32.0 39.0 13 36.51242916648313 38.0 35.0 39.0 32.0 39.0 14 37.4793529085565 39.0 36.0 41.0 32.0 41.0 15 37.468548440139 39.0 36.0 41.0 32.0 41.0 16 37.41903934937254 39.0 36.0 41.0 32.0 41.0 17 37.51731412217126 39.0 36.0 41.0 32.0 41.0 18 37.504520794023286 39.0 36.0 41.0 32.0 41.0 19 37.58015780539949 39.0 36.0 41.0 32.0 41.0 20 37.541926563044015 39.0 36.0 41.0 32.0 41.0 21 37.49504534974304 39.0 36.0 41.0 32.0 41.0 22 37.39088123502396 39.0 36.0 41.0 32.0 41.0 23 37.27999536576373 39.0 36.0 41.0 31.0 41.0 24 37.20766145455884 39.0 36.0 41.0 31.0 41.0 25 37.149019056486395 39.0 36.0 41.0 31.0 41.0 26 36.895941483112495 39.0 35.0 40.0 31.0 41.0 27 36.729170827724076 39.0 35.0 40.0 30.0 41.0 28 36.60886110626702 38.0 35.0 40.0 30.0 41.0 29 36.45363440582514 38.0 35.0 40.0 30.0 41.0 30 36.2478966420493 38.0 35.0 40.0 30.0 41.0 31 35.975031543580826 38.0 35.0 40.0 30.0 41.0 32 35.82661680839907 38.0 34.0 40.0 29.0 41.0 33 35.85330681118082 38.0 35.0 40.0 29.0 41.0 34 35.801423277744625 38.0 35.0 40.0 29.0 41.0 35 35.70645069999294 38.0 35.0 40.0 28.0 41.0 36 35.601969188363 38.0 34.0 40.0 27.0 41.0 37 35.449014953256366 38.0 34.0 40.0 27.0 41.0 38 35.318314405173446 38.0 34.0 40.0 26.0 41.0 39 35.20945631598733 38.0 34.0 40.0 25.0 41.0 40 35.01502747655577 38.0 34.0 40.0 24.0 41.0 41 34.847392427488984 38.0 34.0 40.0 24.0 41.0 42 34.642394451950274 38.0 33.0 40.0 23.0 41.0 43 34.28981264531016 38.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 2.0 14 7.0 15 12.0 16 38.0 17 89.0 18 211.0 19 611.0 20 1177.0 21 2383.0 22 4381.0 23 7446.0 24 12213.0 25 19566.0 26 29456.0 27 42663.0 28 59916.0 29 79984.0 30 101540.0 31 122768.0 32 149394.0 33 181366.0 34 220372.0 35 265896.0 36 336236.0 37 458285.0 38 581158.0 39 637292.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.305406427951205 22.532978202797317 13.974515321038528 22.18710004821295 2 17.89264743418389 23.37664453537256 35.98556869863042 22.745139331813128 3 20.053148897166416 26.291174857337328 32.33040535688748 21.32527088860877 4 13.048392167416612 16.05476243203271 35.2654216581756 35.631423742375084 5 11.595999592090662 40.52524964835922 34.069239593031995 13.809511166518126 6 31.19537952162372 36.32616696163661 15.709216156347546 16.769237360392125 7 24.56443911560911 35.328659673877695 21.578192780608134 18.528708429905063 8 28.094514283162695 33.03803151159977 20.279761843701934 18.5876923615356 9 25.776068634970017 13.500411228126918 23.577099390489316 37.146420746413746 10 16.48614465937458 27.983365022739736 33.295629878996955 22.234860438888724 11 31.721467918473646 22.08080828804192 24.914511012647 21.28321278083743 12 20.66241821447945 27.662920860157698 31.592367026684876 20.082293898677975 13 31.119861986651227 21.085231932060168 28.473369132003928 19.321536949284678 14 21.109489262510778 22.512793931564158 28.85225415165418 27.52546265427089 15 23.09798694328069 28.927681174199616 26.916223507766873 21.058108374752827 16 21.7461235036033 28.191694459010243 27.458694653913668 22.603487383472793 17 19.582604959718953 27.026437473110263 28.206146276529946 25.184811290640834 18 20.57959934372456 26.249056407947958 32.47661309738956 20.69473115093792 19 19.99356154935552 24.78767293153459 34.000570831706625 21.218194687403265 20 24.10047241452761 23.87419134689129 32.44303298695233 19.582303251628773 21 23.426637565915676 24.780281083325136 31.460098199949194 20.332983150809998 22 21.930618000749444 24.568512174826562 32.28563187630451 21.215237948119483 23 20.985064846119823 26.23774235456614 33.1126137514927 19.664579047821334 24 19.620620179081854 25.663290150860078 31.77034462908309 22.945745040974977 25 20.90327178287155 26.324875651010633 32.70431219304973 20.067540373068088 26 22.187522439539205 25.37205133140763 31.44709458126236 20.993331647790804 27 20.67484858779494 26.790893967105372 31.23478259820146 21.29947484689823 28 20.54674333270377 26.512990645238954 31.150606041040746 21.789659981016527 29 19.616637632291457 26.410621090240287 32.08297455212942 21.889766725338834 30 19.188694877177653 26.78084708770232 33.87213369771625 20.158324337403776 31 20.5280374311125 26.173176823267248 32.66801670980087 20.630769035819387 32 21.494981689336008 26.384734536102695 30.85354425544779 21.266739519113507 33 22.2680181579997 26.313863305719 30.378565209074655 21.039553327206647 34 20.663836242503308 28.746173587146266 30.531350185942696 20.058639984407726 35 19.426772731140076 29.673443231510877 30.75174794582047 20.148036091528578 36 20.31095846022673 26.365666584803204 32.616122918289605 20.70725203668046 37 20.346378990014067 26.63810899023733 31.679530493938383 21.335981525810222 38 20.627540759254444 26.196227321357128 32.21587696585449 20.960354953533937 39 21.617203636668634 25.610159356179075 32.16654769310977 20.60608931404252 40 19.781521103575784 26.48167334547809 31.513892752428603 22.222912798517527 41 20.785213407183427 25.73518718875039 31.52137511306511 21.958224291001073 42 18.40757263169709 27.36435053411383 31.91057854939957 22.317498284789508 43 19.04405601874452 27.08388269348087 31.510483451009545 22.36157783676506 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 380.0 1 526.0 2 672.0 3 1764.5 4 2857.0 5 2857.0 6 4946.0 7 7035.0 8 7581.5 9 8128.0 10 12227.0 11 16326.0 12 16326.0 13 29250.5 14 42175.0 15 68697.5 16 95220.0 17 91792.5 18 88365.0 19 88365.0 20 93289.0 21 98213.0 22 78472.0 23 58731.0 24 64645.5 25 70560.0 26 70560.0 27 75569.5 28 80579.0 29 83771.0 30 86963.0 31 92907.5 32 98852.0 33 98852.0 34 107753.0 35 116654.0 36 129771.5 37 142889.0 38 148834.0 39 154779.0 40 154779.0 41 162408.0 42 170037.0 43 191768.5 44 213500.0 45 262644.5 46 311789.0 47 311789.0 48 318741.0 49 325693.0 50 296441.5 51 267190.0 52 250167.5 53 233145.0 54 233145.0 55 204843.0 56 176541.0 57 148807.5 58 121074.0 59 106510.5 60 91947.0 61 91947.0 62 81024.5 63 70102.0 64 61225.0 65 52348.0 66 44993.0 67 37638.0 68 37638.0 69 32281.0 70 26924.0 71 23103.0 72 19282.0 73 15659.5 74 12037.0 75 12037.0 76 9541.5 77 7046.0 78 5532.0 79 4018.0 80 3136.5 81 2255.0 82 2255.0 83 1707.5 84 1160.0 85 915.0 86 670.0 87 550.0 88 430.0 89 430.0 90 312.0 91 194.0 92 120.0 93 46.0 94 29.5 95 13.0 96 13.0 97 8.5 98 4.0 99 2.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3314462.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.39002857607505 #Duplication Level Percentage of deduplicated Percentage of total 1 71.03796346124237 26.561114838020277 2 14.112143230764893 10.55306877335927 3 5.651510424455467 6.3393040880512785 4 2.8537774955378614 4.268112884316821 5 1.672586046559037 3.1269020038393394 6 0.9882879926789748 2.217126977259523 7 0.6631069568829412 1.7355511646793138 8 0.45188748553020774 1.3516868797716135 9 0.34649308083891295 1.1659847574581315 >10 1.9077912534619763 13.297959643726037 >50 0.1729910311223956 4.5241423045168245 >100 0.12239538957872263 8.64637321706721 >500 0.010502540995772079 2.64380260176393 >1k 0.00710941236630882 5.360041461836978 >5k 8.078877688987294E-4 2.1633913203901094 >10k+ 6.463102151189836E-4 6.045437083943565 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 46332 1.3978739234301072 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 46175 1.3931371064142537 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 40453 1.2204997372122535 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 19555 0.5899901703504218 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15424 0.46535455829633887 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 11721 0.353632052502035 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 10386 0.3133540224627707 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 10088 0.30436312137535443 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 9388 0.28324355506263155 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 8778 0.26483936156154453 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 8213 0.24779285446627536 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 7764 0.23424616121711458 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 7485 0.2258285055010436 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 6568 0.19816187363137666 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 6000 0.181024854109053 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5953 0.17960682608519873 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 5831 0.17592598738498133 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 5639 0.17013319205349164 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 4608 0.1390270879557527 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 4548 0.13721683941466217 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 4070 0.12279519270397428 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 3980 0.12007981989233849 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3931 0.11860145025044788 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3824 0.11537317368550311 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3583 0.10810200871212282 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 3515 0.10605039369888689 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 3422 0.10324450846019655 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 9.05124270545265E-5 0.0 10 0.0 0.0 0.0 1.2068323607270199E-4 0.0 11 0.0 0.0 0.0 1.508540450908775E-4 0.0 12 0.0 0.0 0.0 2.4136647214540398E-4 0.0 13 0.0 0.0 0.0 3.01708090181755E-4 0.0 14 0.0 0.0 0.0 3.922205172362815E-4 0.0 15 0.0 0.0 0.0 7.24099416436212E-4 0.0 16 0.0 0.0 0.0 0.0013576864058178974 0.0 17 0.0 0.0 0.0 0.0021119566312722848 0.0 18 0.0 0.0 0.0 0.002353323103417689 0.0 19 0.0 0.0 0.0 0.002866226856726672 0.0 20 0.0 0.0 0.0 0.0039523759813809905 0.0 21 0.0 0.0 0.0 0.0054307456232715896 0.0 22 0.0 3.0170809018175498E-5 0.0 0.008327143289016438 0.0 23 0.0 3.0170809018175498E-5 0.0 0.01421045104756066 0.0 24 0.0 3.0170809018175498E-5 0.0 0.022416911100504394 0.0 25 0.0 3.0170809018175498E-5 0.0 0.02688219083519437 0.0 26 0.0 3.0170809018175498E-5 0.0 0.03533001736028351 0.0 27 0.0 3.0170809018175498E-5 0.0 0.10381775383154189 0.0 28 0.0 3.0170809018175498E-5 0.0 0.17456830097916343 0.0 29 0.0 3.0170809018175498E-5 0.0 0.25421923678714675 0.0 30 0.0 3.0170809018175498E-5 0.0 0.3979529709497348 0.0 31 0.0 3.0170809018175498E-5 0.0 0.61168298203449 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATTAGCG 25 0.005497819 29.6 3 GGTATCA 11015 0.0 27.443487 1 GTATTGG 975 0.0 21.251282 1 ATTGGAC 1065 0.0 19.976526 3 TTGGACC 1960 0.0 17.084183 4 GGACCCT 1925 0.0 16.914286 6 TGGACCC 1980 0.0 16.818182 5 TATTGGA 1280 0.0 16.621094 2 CGTCTGT 760 0.0 16.55263 34 GTCGTCA 215 0.0 16.348839 24 TATACCG 240 0.0 16.1875 5 GTATCAA 19030 0.0 15.89464 2 TATACTG 440 0.0 15.556818 5 CTAGTAC 465 0.0 15.516129 3 TAGTACT 550 0.0 15.136364 4 GACCCTC 2065 0.0 15.050848 7 TAGGTCG 240 0.0 14.645834 21 CCTAGTA 300 0.0 14.183333 2 TACTGTG 655 0.0 14.122137 7 TTTTTAC 2225 0.0 13.885393 1 >>END_MODULE