##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088361_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 500551 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.42446024481022 31.0 31.0 34.0 30.0 34.0 2 31.631110516211134 31.0 31.0 34.0 30.0 34.0 3 31.73233696466494 31.0 31.0 34.0 30.0 34.0 4 35.4990440534531 37.0 35.0 37.0 33.0 37.0 5 35.320912354585246 37.0 35.0 37.0 33.0 37.0 6 35.34328569915952 37.0 35.0 37.0 32.0 37.0 7 35.215726269650844 37.0 35.0 37.0 32.0 37.0 8 35.25066976192236 37.0 35.0 37.0 32.0 37.0 9 36.768219422196736 39.0 37.0 39.0 32.0 39.0 10 36.63726573316205 39.0 35.0 39.0 32.0 39.0 11 36.74460944039668 39.0 35.0 39.0 32.0 39.0 12 36.603199274399614 39.0 35.0 39.0 32.0 39.0 13 36.636670389231064 39.0 35.0 39.0 32.0 39.0 14 37.64532884760993 39.0 36.0 41.0 32.0 41.0 15 37.651128456441 39.0 36.0 41.0 32.0 41.0 16 37.60452581255456 39.0 36.0 41.0 32.0 41.0 17 37.65748944662981 39.0 36.0 41.0 32.0 41.0 18 37.63500822094052 39.0 36.0 41.0 32.0 41.0 19 37.702673653633695 40.0 37.0 41.0 32.0 41.0 20 37.65794894026782 39.0 37.0 41.0 32.0 41.0 21 37.6196950960042 39.0 37.0 41.0 32.0 41.0 22 37.50683746511344 39.0 36.0 41.0 32.0 41.0 23 37.40638816024741 39.0 36.0 41.0 32.0 41.0 24 37.32733128092842 39.0 36.0 41.0 31.0 41.0 25 37.27206218746941 39.0 36.0 41.0 31.0 41.0 26 37.05075606681437 39.0 36.0 41.0 31.0 41.0 27 36.898004399152136 39.0 35.0 40.0 31.0 41.0 28 36.79659015764627 39.0 35.0 40.0 30.0 41.0 29 36.6472067781305 39.0 35.0 40.0 30.0 41.0 30 36.48175910147018 38.0 35.0 40.0 30.0 41.0 31 36.247207577249874 38.0 35.0 40.0 30.0 41.0 32 36.08514816672027 38.0 35.0 40.0 30.0 41.0 33 36.16119036821423 38.0 35.0 40.0 30.0 41.0 34 36.13801191087422 38.0 35.0 40.0 30.0 41.0 35 36.07346504152424 38.0 35.0 40.0 30.0 41.0 36 35.998209972610184 38.0 35.0 40.0 29.0 41.0 37 35.869216123831535 38.0 35.0 40.0 29.0 41.0 38 35.76758412229723 38.0 35.0 40.0 28.0 41.0 39 35.70176065975295 38.0 35.0 40.0 27.0 41.0 40 35.56639183619651 38.0 35.0 40.0 26.0 41.0 41 35.45164029239778 38.0 34.0 40.0 26.0 41.0 42 35.30306202564773 38.0 34.0 40.0 25.0 41.0 43 34.97860757445295 38.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 2.0 15 3.0 16 4.0 17 10.0 18 29.0 19 62.0 20 166.0 21 310.0 22 531.0 23 966.0 24 1581.0 25 2606.0 26 3924.0 27 5471.0 28 8162.0 29 10728.0 30 14001.0 31 17169.0 32 21202.0 33 26085.0 34 31615.0 35 38711.0 36 49706.0 37 67752.0 38 90556.0 39 109199.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.897331141082525 22.387728722947312 13.609402438512758 23.1055376974574 2 17.824956897498957 23.060187673184153 36.12359180183438 22.991263627482514 3 19.454361293854173 26.148983819830544 31.811343899023274 22.585310987292004 4 13.005268194449716 16.1577941108898 36.346745886033595 34.49019180862689 5 12.05711306140633 39.68426793673372 34.6106590537228 13.647959948137153 6 31.223791381897147 37.056563666839146 16.083276229594986 15.63636872166872 7 24.96309067407717 34.41527436764685 22.44326751919385 18.178367439082134 8 27.079758106566565 33.812738362324716 20.652041450321747 18.455462080786972 9 25.759413126734337 13.930848205277785 22.959298852664364 37.35043981532352 10 16.19035822523579 27.423778995546904 34.153962333508474 22.23190044570883 11 32.397098397565884 22.380336868770616 24.661423111730873 20.56114162193263 12 20.192148252625604 27.197428433865877 31.787570097752276 20.822853215756236 13 30.05787622040511 21.236597269808673 28.080255558374674 20.625270951411544 14 20.820256077802263 22.435875665017154 28.35135680480111 28.392511452379477 15 23.101741880447747 29.205415631973565 26.043100503245427 21.649741984333264 16 22.037514658845954 28.31080149675058 26.922531370429788 22.72915247397368 17 20.149595146148943 27.32868379046291 27.88726823041009 24.634452832978056 18 20.997061238515155 26.60867723768407 31.147275702176202 21.24698582162457 19 20.666026039304686 25.57321831341861 32.125797371296834 21.63495827597987 20 23.582412181775684 24.90235760192268 31.093934484198414 20.42129573210322 21 23.241387990434543 25.654129149677058 30.278033606965128 20.82644925292328 22 22.297428234086038 25.343071934727927 30.921324700180403 21.438175131005632 23 21.32070458354893 26.512583133387007 31.53444903716105 20.632263245903015 24 20.367554954440205 26.298818701790626 30.55073309213247 22.782893251636697 25 21.298928580704064 26.801664565648654 31.195023084560813 20.70438376908647 26 22.296229555030354 26.23548849168217 30.17554654770443 21.292735405583045 27 21.34627640340345 27.062177480416583 30.048886127487506 21.54265998869246 28 21.04560774027022 26.66241801534709 30.287223479725345 22.004750764657345 29 20.20853019971991 26.607278778785776 31.146876142490974 22.03731487900334 30 20.00635299899511 27.065773517583626 32.02490855077704 20.902964932644228 31 21.113133327073566 26.475823642346136 31.295312565552763 21.11573046502754 32 21.53327033608963 26.561129635142073 30.156767242498766 21.74883278626953 33 22.168170675915142 26.49520228707964 29.817740849583757 21.51888618742146 34 21.173466839542822 28.17475142393083 29.815343491472397 20.83643824505395 35 20.448066231013424 28.56751859450885 30.078253764351686 20.906161410126042 36 20.839035383007925 26.4842143957359 31.101925677902955 21.574824543353223 37 21.13490932991843 26.321393824005945 30.776284534443043 21.76741231163258 38 21.0883606265895 26.02532009725283 31.287920711376067 21.59839856478161 39 21.535667694200992 25.77579507382864 31.237775970880087 21.45076126109028 40 20.44846579069865 26.221104343014 30.89555310048327 22.434876765804084 41 20.895373298624914 25.795173718562143 30.991447424937718 22.318005557875225 42 19.265968902269698 27.06417527884272 31.17284752203072 22.497008296856862 43 19.6375594095307 26.792474692888433 30.72713869316014 22.84282720442073 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 59.0 1 79.0 2 99.0 3 266.0 4 433.0 5 433.0 6 664.0 7 895.0 8 910.0 9 925.0 10 1442.5 11 1960.0 12 1960.0 13 3436.0 14 4912.0 15 7948.0 16 10984.0 17 10783.5 18 10583.0 19 10583.0 20 11497.5 21 12412.0 22 10566.5 23 8721.0 24 9658.5 25 10596.0 26 10596.0 27 11782.0 28 12968.0 29 13743.5 30 14519.0 31 15736.5 32 16954.0 33 16954.0 34 18532.5 35 20111.0 36 21780.0 37 23449.0 38 24544.0 39 25639.0 40 25639.0 41 27003.0 42 28367.0 43 30743.5 44 33120.0 45 38468.5 46 43817.0 47 43817.0 48 44597.0 49 45377.0 50 41532.0 51 37687.0 52 35771.0 53 33855.0 54 33855.0 55 30265.5 56 26676.0 57 23351.0 58 20026.0 59 17958.5 60 15891.0 61 15891.0 62 14215.5 63 12540.0 64 10907.5 65 9275.0 66 7931.0 67 6587.0 68 6587.0 69 5521.5 70 4456.0 71 3684.5 72 2913.0 73 2279.5 74 1646.0 75 1646.0 76 1268.0 77 890.0 78 689.5 79 489.0 80 394.0 81 299.0 82 299.0 83 232.5 84 166.0 85 134.5 86 103.0 87 92.0 88 81.0 89 81.0 90 70.0 91 59.0 92 34.0 93 9.0 94 5.0 95 1.0 96 1.0 97 1.5 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 500551.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 61.128998670615545 #Duplication Level Percentage of deduplicated Percentage of total 1 85.45643963231396 52.23866584679258 2 8.61352920624383 10.530728307955748 3 2.2764959796636073 4.174797591435548 4 0.9995505571355248 2.4440609871340206 5 0.5761017743990134 1.7608262300688275 6 0.3792200202427437 1.3908804067973688 7 0.26067911221650986 1.1154537172898191 8 0.19041184608882245 0.9311748389146465 9 0.1632484039073216 0.8981290318887695 >10 0.9694283241704722 11.318047245629295 >50 0.07496007962111965 3.179350461647459 >100 0.03404300537456251 4.160028684772428 >500 0.002946029311260217 1.2766225593481524 >1k 0.0022913561309801686 2.5482426792004262 >5k 6.546731802800482E-4 2.032991411124957 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 5105 1.0198760965416112 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 5055 1.0098871044109392 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 4610 0.9209850744479584 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 2056 0.4107473564132326 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1768 0.3532107617405619 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 1162 0.23214417711681729 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 1094 0.21855914781910335 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 1033 0.20637257741968348 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 1012 0.20217720072480128 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 850 0.169812866221424 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 849 0.16961308637881053 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 757 0.15123334085837406 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 754 0.15063400133053373 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 687 0.13724875187543328 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 661 0.13205447596748382 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 644 0.12865821864305535 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 614 0.12266482336465215 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 564 0.11267583123398014 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 1.9977984261343999E-4 0.0 8 0.0 0.0 0.0 1.9977984261343999E-4 0.0 9 0.0 0.0 0.0 1.9977984261343999E-4 0.0 10 0.0 0.0 0.0 1.9977984261343999E-4 0.0 11 0.0 0.0 0.0 3.9955968522687997E-4 0.0 12 0.0 0.0 0.0 9.988992130671999E-4 0.0 13 0.0 0.0 0.0 9.988992130671999E-4 0.0 14 0.0 0.0 0.0 0.00139845889829408 0.0 15 0.0 0.0 0.0 0.0015982387409075199 0.0 16 0.0 0.0 0.0 0.00279691779658816 0.0 17 0.0 0.0 0.0 0.0035960371670419196 0.0 18 0.0 0.0 0.0 0.00439515653749568 0.0 19 0.0 0.0 0.0 0.00479471622272256 0.0 20 0.0 0.0 0.0 0.006592734806243519 0.0 21 0.0 0.0 0.0 0.01018877197328544 0.0 22 0.0 0.0 0.0 0.01518326803862144 0.0 23 0.0 0.0 0.0 0.02157622300225152 0.0 24 0.0 0.0 0.0 0.03416235308689824 0.0 25 0.0 0.0 0.0 0.03935662899484768 0.0 26 0.0 0.0 1.9977984261343999E-4 0.047947162227225594 0.0 27 0.0 0.0 1.9977984261343999E-4 0.10927957390955167 0.0 28 0.0 0.0 1.9977984261343999E-4 0.1724100041753987 0.0 29 0.0 0.0 3.9955968522687997E-4 0.2533208404338419 0.0 30 0.0 0.0 3.9955968522687997E-4 0.4059526401905101 0.0 31 0.0 0.0 3.9955968522687997E-4 0.6532800853459487 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACCGAAT 30 3.5966E-4 30.833334 8 TAAAGGT 25 0.005493416 29.6 4 TCAATCG 25 0.005493416 29.6 32 TGACCCG 40 5.9335325E-5 27.750002 13 GGTATCA 1195 0.0 26.472803 1 TCGATGA 35 8.862371E-4 26.428572 28 CAACCGT 40 0.0019296723 23.125002 6 TAGACAG 50 2.69915E-4 22.2 5 TCTAGAC 45 0.003822836 20.555557 3 ACCCGTT 45 0.003822836 20.555557 30 GTGCTAG 55 5.137521E-4 20.181818 1 TAGTGTA 55 5.137521E-4 20.181818 9 GCGTTAT 65 6.8921836E-5 19.923077 1 CTATTCA 65 6.8921836E-5 19.923077 4 ATTGGAC 180 0.0 19.527779 3 TCATTCG 60 9.226885E-4 18.5 12 GACCCGC 60 9.226885E-4 18.5 14 CGTTATT 70 1.2174529E-4 18.5 2 ACCCGCC 60 9.226885E-4 18.5 15 CGTCTGT 125 8.543793E-9 17.76 34 >>END_MODULE