##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088358_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1172665 Sequences flagged as poor quality 0 Sequence length 43 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.682129167324 31.0 30.0 31.0 28.0 34.0 2 30.866719821944034 31.0 31.0 33.0 27.0 34.0 3 30.844958278792323 31.0 30.0 34.0 27.0 34.0 4 34.68863912541092 35.0 35.0 37.0 32.0 37.0 5 34.4812585009359 35.0 35.0 37.0 30.0 37.0 6 34.66106432783446 35.0 35.0 37.0 31.0 37.0 7 34.49071388674515 35.0 35.0 37.0 30.0 37.0 8 34.6223866151032 35.0 35.0 37.0 30.0 37.0 9 35.95168611666588 37.0 35.0 39.0 30.0 39.0 10 35.73772987170249 37.0 35.0 39.0 30.0 39.0 11 35.98193516477426 37.0 35.0 39.0 30.0 39.0 12 35.73892543906401 37.0 35.0 39.0 30.0 39.0 13 35.86280566061066 37.0 35.0 39.0 30.0 39.0 14 36.603561119330756 38.0 35.0 40.0 30.0 41.0 15 36.65618569668234 38.0 35.0 40.0 31.0 41.0 16 36.522839003466466 38.0 35.0 40.0 30.0 41.0 17 36.656423616292805 38.0 36.0 40.0 31.0 41.0 18 36.64859699914298 38.0 36.0 40.0 30.0 41.0 19 36.750138360060205 39.0 36.0 40.0 30.0 41.0 20 36.73506073772134 39.0 35.0 40.0 30.0 41.0 21 36.71441033884357 38.0 35.0 40.0 30.0 41.0 22 36.57780184451655 38.0 35.0 40.0 30.0 41.0 23 36.43108389864113 38.0 35.0 40.0 30.0 41.0 24 36.33952748653707 38.0 35.0 40.0 30.0 41.0 25 36.25281985903903 38.0 35.0 40.0 30.0 41.0 26 35.96060255912814 38.0 34.0 40.0 29.0 41.0 27 35.740817710087704 38.0 34.0 40.0 28.0 41.0 28 35.580001108585996 38.0 34.0 40.0 27.0 41.0 29 35.385166266580825 38.0 34.0 40.0 27.0 41.0 30 35.13598683340937 37.0 33.0 40.0 27.0 41.0 31 34.81796762076126 37.0 33.0 40.0 26.0 41.0 32 34.65125931105644 37.0 33.0 40.0 25.0 41.0 33 34.66516524327067 37.0 33.0 40.0 25.0 41.0 34 34.57118614438053 37.0 33.0 40.0 25.0 41.0 35 34.41660576549995 37.0 33.0 40.0 25.0 41.0 36 34.258025949439954 37.0 33.0 40.0 24.0 41.0 37 34.06285938439367 37.0 33.0 40.0 23.0 41.0 38 33.90645580792469 37.0 33.0 40.0 23.0 41.0 39 33.7169592338818 37.0 33.0 40.0 21.0 41.0 40 33.461939258014866 37.0 32.0 40.0 20.0 41.0 41 33.23170555955878 37.0 32.0 40.0 18.0 41.0 42 32.9667884690001 36.0 31.0 40.0 16.0 41.0 43 32.55079242579936 36.0 31.0 40.0 15.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 3.0 14 11.0 15 17.0 16 38.0 17 99.0 18 220.0 19 462.0 20 947.0 21 1862.0 22 3105.0 23 4959.0 24 7576.0 25 11405.0 26 16341.0 27 22493.0 28 29746.0 29 38276.0 30 47187.0 31 55873.0 32 66212.0 33 78024.0 34 91908.0 35 110724.0 36 139146.0 37 175683.0 38 184219.0 39 86127.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.48817437204999 25.426869566329685 15.630124545373144 19.454831516247182 2 21.20315691182051 25.73778530100242 31.84549722213931 21.213560565037756 3 24.13101780986045 25.613708945009872 31.75919806594381 18.496075179185873 4 16.31275769294726 18.174585239603807 32.350671334097974 33.16198573335096 5 11.264939262278656 42.46651857094737 33.11568094894962 13.152861217824357 6 32.21098949827956 36.22390026137047 14.110508968887109 17.454601271462863 7 22.851453739985416 36.69624317260258 21.599945423458532 18.852357663953473 8 28.33648143331642 34.167558509889865 19.997527000464753 17.49843305632896 9 24.817232542968366 13.151667355979754 24.423343410095807 37.607756690956066 10 17.201673112099364 29.298307700835274 32.741405260666944 20.758613926398418 11 31.868521700570923 21.82481782947389 24.132467499243177 22.17419297071201 12 19.210345665641935 29.285601599774875 31.78904461205886 19.715008122524335 13 31.555815173131286 20.52035321255431 29.737648859648747 18.186182754665655 14 20.5302452106953 22.983631301352048 30.095807413029295 26.39031607492336 15 23.669419655229753 29.21678399201818 27.308140005884034 19.80565634686803 16 21.095794621652388 27.39631523069248 29.233071678612394 22.27481846904274 17 18.890134863750514 27.464280079988747 29.97463043580221 23.670954620458527 18 19.68737874840641 24.8752201182776 34.543454439247355 20.89394669406864 19 19.252642485279257 24.39545820843975 36.50428724315981 19.847612063121183 20 22.97450678582545 23.378714296069212 35.15582028968205 18.490958628423293 21 23.048782047728892 23.623711801750712 33.84768881138262 19.479817339137774 22 21.199319498748576 23.832296521171862 34.3878260202189 20.58055795986066 23 20.152302661032774 26.07411323779596 35.261647614621396 18.511936486549867 24 18.993062809924403 25.15441323822234 34.169519854348856 21.6830040975044 25 19.83644092728955 26.023203557708296 34.781374049707296 19.358981465294864 26 21.034054909117266 24.84759074415967 33.896040216089 20.22231413063407 27 20.559835929272214 25.843100970865507 33.57813186204074 20.018931237821544 28 19.944400148379973 26.279542750913514 33.68097453236858 20.095082568337933 29 18.965518711652518 25.62198070207604 34.50030486114961 20.912195725121837 30 18.402698127768797 26.185739320266233 35.9912677533652 19.420294798599773 31 19.67919226718628 25.27490800868108 34.82767883410863 20.218220890024003 32 20.203212341120437 26.409076761052813 33.0751749220792 20.31253597574755 33 21.16947295263353 26.197592662866203 32.425799354461844 20.20713503003842 34 20.129704561831385 28.36845987558254 32.56360512166731 18.938230440918762 35 18.774841919900396 29.052457436693345 32.69646488980229 19.47623575360397 36 19.710147399299885 25.94824608903651 34.4905834147007 19.8510230969629 37 19.48356947636367 26.441822685933325 33.694107012659195 20.38050082504381 38 20.289511497315942 25.981674220685363 33.51613632196748 20.21267796003121 39 21.146960129278185 25.803191874917392 33.20385617375806 19.845991822046365 40 19.634763551397885 26.61186272294304 32.483360550540866 21.270013175118212 41 19.90866956888796 26.428178550566443 32.27639607219453 21.38675580835106 42 18.267621187636706 27.55944792417272 32.33907381903613 21.833857069154448 43 18.791129606494607 27.278634563153158 31.945184686163568 21.985051144188663 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 122.0 1 152.5 2 183.0 3 458.0 4 733.0 5 733.0 6 1642.0 7 2551.0 8 2944.5 9 3338.0 10 5105.0 11 6872.0 12 6872.0 13 13251.0 14 19630.0 15 33083.0 16 46536.0 17 41679.5 18 36823.0 19 36823.0 20 41612.0 21 46401.0 22 35794.5 23 25188.0 24 26076.5 25 26965.0 26 26965.0 27 28433.0 28 29901.0 29 31061.0 30 32221.0 31 33622.5 32 35024.0 33 35024.0 34 37273.0 35 39522.0 36 42764.0 37 46006.0 38 47756.0 39 49506.0 40 49506.0 41 52553.5 42 55601.0 43 63542.5 44 71484.0 45 88598.5 46 105713.0 47 105713.0 48 110214.0 49 114715.0 50 103848.0 51 92981.0 52 86402.0 53 79823.0 54 79823.0 55 68645.5 56 57468.0 57 48948.0 58 40428.0 59 35361.0 60 30294.0 61 30294.0 62 26889.5 63 23485.0 64 20387.5 65 17290.0 66 14893.5 67 12497.0 68 12497.0 69 10626.0 70 8755.0 71 7389.0 72 6023.0 73 4948.0 74 3873.0 75 3873.0 76 2976.5 77 2080.0 78 1619.0 79 1158.0 80 935.5 81 713.0 82 713.0 83 513.0 84 313.0 85 260.5 86 208.0 87 166.0 88 124.0 89 124.0 90 105.5 91 87.0 92 52.0 93 17.0 94 13.0 95 9.0 96 9.0 97 6.0 98 3.0 99 2.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1172665.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 49.85095173809155 #Duplication Level Percentage of deduplicated Percentage of total 1 81.20702496579739 40.482474823639606 2 10.783113753087795 10.750969665830617 3 3.2523718634000707 4.864014983900514 4 1.4102399834411006 2.8120722141459735 5 0.7724757682522273 1.9254326120993488 6 0.47179046962537624 1.4111522359071709 7 0.33571608462792984 1.1715036432741595 8 0.2285757288740494 0.911577410287947 9 0.17703280285229972 0.7942728339944161 >10 1.1770667520102824 11.150763668537618 >50 0.11244522377632149 3.8276414437598225 >100 0.059636623955631615 5.695234886617455 >500 0.005826566166914158 2.1863085182241075 >1k 0.0059979357600586924 6.210630000249077 >5k 1.7136959314453405E-4 0.6486652304968602 >10k+ 5.141087794336022E-4 5.15728582903529 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 23571 2.0100369670792597 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 22510 1.9195592944276498 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 14288 1.2184212882622063 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7593 0.6474994990044045 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 4930 0.42040992099192864 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 4848 0.41341730161640367 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 4781 0.4077038199315235 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 3972 0.33871566048274654 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 3802 0.3242187666554387 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3721 0.31731142312595667 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3051 0.260176606277155 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 3048 0.2599207787390261 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 2747 0.23425274908008678 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 2578 0.21984113109882192 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 2568 0.21898837263839205 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2092 0.17839706992192997 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1740 0.14837997211479834 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 1718 0.14650390350185263 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 1684 0.14360452473639104 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 1651 0.14079042181697243 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 1638 0.13968183581841362 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 1565 0.13345669905727553 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 1467 0.12509966614506274 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 1444 0.12313832168607403 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC 1426 0.12160335645730025 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 1373 0.1170837366170219 No Hit AACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAA 1370 0.11682790907889294 No Hit TCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1306 0.11137025493214174 No Hit GGGGAGAAGAGTAAAATGCAGCAACGCACATGCGAGGGTCCAA 1288 0.10983528970336796 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 1227 0.10463346309474574 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 8.527584604298755E-5 0.0 0.0 0.0 0.0 9 8.527584604298755E-5 0.0 0.0 0.0 0.0 10 8.527584604298755E-5 0.0 0.0 0.0 0.0 11 8.527584604298755E-5 0.0 0.0 8.527584604298755E-5 0.0 12 8.527584604298755E-5 0.0 0.0 1.705516920859751E-4 0.0 13 8.527584604298755E-5 0.0 0.0 1.705516920859751E-4 0.0 14 8.527584604298755E-5 0.0 0.0 3.411033841719502E-4 0.0 15 8.527584604298755E-5 0.0 0.0 5.116550762579253E-4 0.0 16 8.527584604298755E-5 0.0 0.0 0.0011938618446018258 0.0 17 8.527584604298755E-5 0.0 0.0 0.002302447843160664 0.0 18 8.527584604298755E-5 0.0 0.0 0.002472999535246639 0.0 19 8.527584604298755E-5 0.0 0.0 0.0031552063035905397 0.0 20 8.527584604298755E-5 0.0 0.0 0.0037521372258914523 0.0 21 8.527584604298755E-5 0.0 0.0 0.005116550762579253 0.0 22 8.527584604298755E-5 0.0 0.0 0.008101205374083818 0.0 23 8.527584604298755E-5 0.0 0.0 0.012450273522276184 0.0 24 8.527584604298755E-5 8.527584604298755E-5 0.0 0.020807306434488963 0.0 25 8.527584604298755E-5 8.527584604298755E-5 0.0 0.025326926274767302 0.0 26 8.527584604298755E-5 8.527584604298755E-5 0.0 0.03325757995676515 0.0 27 8.527584604298755E-5 8.527584604298755E-5 0.0 0.09030712095952383 0.0 28 8.527584604298755E-5 8.527584604298755E-5 0.0 0.1412168010471874 0.0 29 8.527584604298755E-5 8.527584604298755E-5 0.0 0.2040650995808692 0.0 30 8.527584604298755E-5 8.527584604298755E-5 0.0 0.31688504389574174 0.0 31 8.527584604298755E-5 8.527584604298755E-5 0.0 0.4754981175356986 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5445 0.0 26.705235 1 GTCGCAA 35 8.8695006E-4 26.428572 19 TTGCGTG 35 8.8695006E-4 26.428572 9 CGCGATA 65 9.39217E-8 25.615385 14 GCGATAT 75 3.7408972E-7 22.2 15 ACGTGCG 80 6.960363E-7 20.8125 9 TGCGCGA 90 9.478754E-8 20.555555 12 TGCACGG 45 0.0038258533 20.555555 5 CGTCTGT 245 0.0 19.632652 34 CGATATG 100 2.87504E-7 18.5 16 GTATCAA 8060 0.0 18.08685 2 TACTACG 95 3.606514E-6 17.526316 5 ATACCGT 190 0.0 17.526316 6 ACGTTTA 75 2.0673111E-4 17.266666 26 TATAGTG 130 1.393164E-8 17.076923 5 TGCGTGT 65 0.0015799601 17.076923 10 ACGATCT 110 7.807939E-7 16.818182 32 ATTGGAC 420 0.0 16.297619 3 GGCTACT 125 1.6576814E-7 16.279999 2 GTATTGG 480 0.0 16.1875 1 >>END_MODULE